Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 6.2e-243 844.0 512 100.0
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.9e-175 619.8 410 98.8
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 5.8e-132 475.3 340 74.1
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 2.7e-121 439.9 311 75.2
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 2.4e-101 373.6 280 70.7
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 3.4e-92 343.2 327 59.6
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.1e-90 338.2 316 60.8
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 4.2e-90 336.3 328 59.1
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 4.2e-90 336.3 311 60.8
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.0e-88 331.6 297 60.6
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 3.9e-88 329.7 309 60.2
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 2.6e-87 327.0 263 65.4
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 3.3e-87 326.6 309 59.5
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 4.8e-86 322.8 309 58.9
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 1.8e-85 320.9 322 57.1
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.1e-85 320.1 317 57.1
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 9.1e-85 318.5 310 59.0
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 9.1e-85 318.5 310 59.0
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.9e-83 313.5 320 57.2
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 3.8e-83 313.2 328 56.7
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 5.5e-82 309.3 317 56.2
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 8.8e-80 302.0 351 53.6
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 8.8e-80 302.0 300 56.7
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 8.8e-80 302.0 323 54.2
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.5e-79 301.2 375 49.9
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 5.7e-79 299.3 308 52.6
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 4.8e-78 296.2 312 54.8
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 8.2e-78 295.4 327 52.9
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.8e-77 294.3 322 54.0
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 2.4e-77 293.9 308 53.2
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 4.1e-77 293.1 297 55.9
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.9e-75 287.0 324 52.8
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 3.8e-75 286.6 300 53.7
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.5e-74 284.6 316 51.9
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.2e-74 283.5 318 54.4
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 9.4e-74 282.0 372 48.1
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 9.4e-74 282.0 300 52.7
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 2.7e-73 280.4 308 51.6
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.7e-73 280.4 295 53.2
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 6.1e-73 279.3 313 50.8
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 6.1e-73 279.3 359 48.7
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 8.0e-73 278.9 313 50.5
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 1.4e-72 278.1 309 52.8
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.0e-72 276.9 317 51.4
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 6.8e-72 275.8 365 46.8
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.8e-72 275.8 316 51.3
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 2.6e-71 273.9 317 51.7
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 3.4e-71 273.5 321 49.5
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 2.2e-70 270.8 317 51.7
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 3.7e-70 270.0 308 51.9
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 8.3e-70 268.9 317 51.7
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.0e-69 265.8 321 48.9
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 9.1e-69 265.4 328 48.5
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.2e-68 265.0 310 50.0
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 1.6e-68 264.6 375 45.9
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 2.3e-67 260.8 297 50.2
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.9e-67 260.4 316 50.0
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 1.5e-66 258.1 314 49.0
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 7.2e-66 255.8 334 47.6
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 9.5e-66 255.4 302 50.7
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.6e-65 254.6 283 54.1
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 4.7e-65 253.1 319 49.5
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 6.1e-65 252.7 315 48.6
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.0e-64 251.9 334 47.6
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.8e-64 251.1 315 48.9
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.8e-64 251.1 301 50.2
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 6.8e-64 249.2 313 49.8
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 2.6e-63 247.3 342 47.1
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.4e-63 246.9 273 54.2
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 5.7e-63 246.1 329 47.7
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 6.3e-62 242.7 313 47.9
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 6.3e-62 242.7 255 52.9
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.8e-61 241.1 296 49.3
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 3.1e-61 240.4 299 47.5
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 3.1e-61 240.4 244 55.3
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.7e-60 237.3 299 47.2
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 4.5e-60 236.5 289 46.4
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 5.0e-59 233.0 310 47.1
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.1e-58 231.9 295 48.5
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 7.3e-58 229.2 323 43.3
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 7.3e-58 229.2 332 44.9
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 6.1e-57 226.1 250 51.2
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.3e-56 224.2 388 41.2
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 5.2e-56 223.0 295 45.4
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 5.2e-56 223.0 338 42.9
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.0e-55 221.1 320 43.4
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 2.6e-55 220.7 297 45.5
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 3.4e-55 220.3 344 43.0
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.9e-54 217.2 294 44.9
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 6.4e-54 216.1 336 41.1
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 5.4e-53 213.0 311 44.4
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.5e-52 210.3 284 45.1
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 5.9e-52 209.5 240 52.1
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.0e-51 208.8 315 40.6
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 3.9e-51 206.8 401 35.9
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 5.0e-51 206.5 307 41.0
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 5.0e-51 206.5 294 42.5
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 7.3e-50 202.6 258 50.0
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 7.3e-50 202.6 319 39.2
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.2e-49 201.8 311 43.1
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.6e-49 201.4 310 41.0
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 2.8e-49 200.7 311 40.8
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 4.7e-49 199.9 329 38.9
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 8.0e-49 199.1 366 38.0
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.8e-48 198.0 311 41.5
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 8.9e-48 195.7 295 41.7
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 1.5e-47 194.9 295 41.4
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 1.5e-47 194.9 295 41.4
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 3.4e-47 193.7 292 45.2
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 1.1e-45 188.7 212 50.9
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 9.2e-45 185.7 307 41.0
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 3.0e-43 180.6 311 39.5
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.5e-42 178.3 308 39.0
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.5e-42 177.6 296 40.9
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 7.3e-42 176.0 319 40.8
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.4e-40 171.8 309 36.6
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 1.3e-38 165.2 313 39.6
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.7e-27 128.3 320 32.5
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.8e-23 113.2 124 52.4
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 1.6e-17 95.1 202 32.2
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.4e-16 91.3 87 51.7
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.3e-10 70.9 64 57.8
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.3e-10 70.9 64 57.8
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 4.8e-09 67.0 88 46.6
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.8e-09 67.0 124 33.9
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.4e-08 65.5 84 46.4
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.4e-08 65.5 84 46.4
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.4e-08 65.5 84 46.4
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 5.3e-08 63.5 88 45.5
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 5.3e-08 63.5 88 45.5
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.0e-07 61.6 148 31.1
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 7.6e-07 59.7 148 30.4
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 6.4e-06 56.6 107 34.6


User provided reference genes

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