Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 2018.0 1032 100.0
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 2010.7 1032 99.6
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1661.4 1047 82.5
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1661.0 1037 83.0
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1651.7 1037 82.3
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1610.9 1029 81.2
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1600.1 1038 79.7
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1597.0 1044 79.7
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1592.8 1038 79.6
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1588.5 1029 79.4
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1583.9 1039 79.4
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1580.8 1032 77.6
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1577.8 1030 79.0
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1566.2 1031 78.9
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1562.0 1037 79.2
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1561.6 1030 77.0
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1557.3 1034 76.7
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1556.6 1038 77.6
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1550.4 1042 77.4
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1546.9 1004 79.2
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1543.5 1032 76.9
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1537.7 1032 76.5
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1533.9 1038 77.0
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1533.1 1037 76.3
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1530.0 1084 74.0
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1529.6 1037 76.4
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1526.5 1037 77.0
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1523.5 1045 76.1
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1521.1 1042 76.0
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1520.4 1041 76.1
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1519.2 1034 76.7
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1515.7 1026 76.4
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1513.8 1038 76.1
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1506.9 1038 74.9
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1502.3 1027 75.9
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1501.1 1039 75.5
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1500.3 1038 75.3
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1499.2 1029 76.5
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1499.2 1031 76.0
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1498.0 1064 74.4
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1497.6 1045 75.0
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1497.3 1045 75.2
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1496.9 1038 75.2
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1496.5 1064 74.2
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1496.1 1039 75.4
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1495.7 1038 75.3
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1494.9 1012 75.8
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1494.2 1036 76.4
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1489.6 1043 75.0
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1488.8 1031 74.9
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1486.9 982 78.7
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1486.9 1056 74.1
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1485.3 1020 76.1
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1483.0 1044 74.1
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1481.8 1048 74.3
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1478.4 1076 73.1
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1472.6 1038 74.6
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1472.2 1042 74.3
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1470.7 1032 74.5
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1457.2 1039 73.7
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1452.6 1035 73.9
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1445.6 1039 72.7
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1442.9 1012 73.5
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1439.1 1019 72.9
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1434.5 1021 72.6
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1432.2 1013 73.3
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1429.8 1041 72.3
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1429.8 1041 72.3
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1429.1 1020 73.3
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1421.8 1018 72.6
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1421.0 1069 71.7
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1420.6 1017 72.8
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1419.8 1000 73.7
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1419.4 1018 72.4
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1416.4 1039 71.2
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1415.2 1041 70.8
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1413.7 1025 72.0
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1411.7 1041 70.4
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1404.4 1038 70.0
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1403.7 1025 72.2
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1402.5 1036 70.5
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1402.1 942 77.0
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1401.3 1013 71.7
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1398.3 1079 68.5
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1395.6 1028 70.7
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1387.1 1018 71.4
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1384.4 891 80.2
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1384.0 1013 70.9
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1382.1 1018 71.4
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1381.7 890 79.4
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1380.9 1013 72.3
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1371.3 1022 71.0
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1367.1 1039 69.8
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1366.7 1027 69.7
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1360.5 1019 71.0
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1360.5 917 77.5
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1358.2 1007 70.8
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1357.4 1018 70.3
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1356.3 1019 70.8
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1350.1 1049 67.9
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1350.1 1036 68.5
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1341.3 1028 69.0
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1340.1 1028 68.9
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1339.3 1028 68.8
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1338.2 1022 69.2
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1337.4 990 70.9
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1337.0 1016 69.5
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1326.2 1007 69.6
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1321.2 1023 68.6
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1315.8 1034 67.0
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1313.9 1047 66.7
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1310.4 1014 68.0
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1306.6 1040 67.5
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1303.1 1040 67.5
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1295.4 1009 68.1
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1293.1 1025 66.4
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1281.2 1027 66.6
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1232.2 1029 63.8
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1210.7 1040 65.1
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1206.4 932 68.2
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1203.3 1038 62.9
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1199.5 994 64.6
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1196.4 1037 63.5
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1190.6 1042 62.8
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1172.1 1031 62.0
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1152.5 1048 60.8
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1143.3 1045 59.2
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1136.7 853 69.3
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 0.0e+00 1103.6 994 61.1
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 2.8e-303 1045.4 1051 59.6
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.4e-294 1016.5 920 59.0
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 6.6e-284 981.1 805 67.2
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 4.0e-281 971.8 852 61.9
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 9.2e-270 934.1 721 70.0
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 2.5e-267 926.0 989 53.1
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 6.8e-265 917.9 743 69.2
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 1.9e-251 873.2 1067 48.4
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.3e-244 850.5 975 48.9
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.9e-243 846.7 980 48.2
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 3.1e-241 839.3 1041 47.0
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 5.8e-232 808.5 835 53.3
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 3.2e-230 802.7 819 54.6
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 6.3e-218 761.9 721 63.7
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 5.9e-208 728.8 917 46.6
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 3.2e-198 696.4 649 58.6
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.7e-189 666.8 835 50.8
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 3.1e-177 626.7 637 56.5
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.8e-173 613.6 935 41.2
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 5.4e-161 572.8 546 62.3
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 7.0e-161 572.4 629 52.5
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.5e-158 564.7 671 51.0
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.6e-151 539.3 608 51.5
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 5.1e-143 513.1 1132 33.6
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.6e-133 481.5 389 63.2
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.4e-124 451.8 315 75.6
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 3.1e-124 450.7 645 45.1
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.3e-111 407.9 235 86.4
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 6.3e-93 346.7 267 68.5
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 8.5e-90 336.3 310 59.4
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 4.7e-80 303.9 1065 29.4
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 8.0e-72 276.6 253 60.1
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 7.8e-59 233.4 222 56.8
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 2.8e-56 224.9 1294 24.3
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 7.3e-49 200.3 917 24.3
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 9.5e-49 199.9 173 54.3
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.9e-47 193.4 234 42.3
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 2.6e-46 191.8 162 63.0
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 2.2e-45 188.7 162 62.3
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.2e-38 166.4 153 55.6
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 3.5e-35 154.8 189 49.2
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.0e-30 139.0 123 56.9
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 4.7e-24 117.9 107 55.1
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 6.9e-23 114.0 87 59.8
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 9.0e-23 113.6 87 59.8
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.2e-14 86.7 63 74.6
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 2.4e-12 79.0 60 71.7
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 2.4e-12 79.0 65 60.0
Actinidia33992 Actinidia chinensis HOM05D003977 ORTHO05D004536 1.4e-07 63.2 46 73.9
Actinidia09594 Actinidia chinensis HOM05D003977 ORTHO05D004536 2.4e-07 62.4 47 70.2


User provided reference genes

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