Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 0.0e+00 1102.4 609 100.0
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 4.3e-251 871.3 615 75.3
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 2.6e-248 862.1 614 75.6
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 1.0e-247 860.1 614 75.4
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 3.4e-232 808.5 611 73.2
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.1e-230 803.5 514 81.7
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 7.4e-227 790.8 617 69.2
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 9.7e-227 790.4 612 69.8
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.8e-226 788.1 617 69.0
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.4e-225 786.6 617 69.0
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 5.3e-225 784.6 617 70.8
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.6e-224 782.3 611 69.2
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 5.9e-224 781.2 617 68.6
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 3.8e-223 778.5 612 70.1
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.5e-222 776.5 612 71.7
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 6.1e-221 771.2 608 67.3
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 6.1e-221 771.2 615 68.1
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 1.1e-219 766.9 616 68.0
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 3.3e-219 765.4 616 67.5
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 3.3e-219 765.4 589 72.3
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 4.4e-219 765.0 615 67.5
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 7.5e-219 764.2 616 66.2
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 1.3e-218 763.5 612 69.9
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.3e-218 763.5 610 66.7
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 4.8e-218 761.5 611 72.3
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.4e-217 760.0 615 70.2
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 4.1e-217 758.4 614 67.8
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 1.6e-216 756.5 616 69.2
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.3e-215 753.4 603 69.2
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.7e-215 753.1 583 70.0
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 1.1e-214 750.4 598 68.4
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 3.2e-214 748.8 612 66.0
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 5.5e-214 748.0 613 70.1
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 8.0e-213 744.2 612 70.9
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.8e-212 743.0 584 69.0
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 2.3e-212 742.7 612 65.4
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 4.0e-212 741.9 613 66.2
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 2.6e-211 739.2 596 66.8
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 3.4e-211 738.8 618 64.7
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 3.4e-211 738.8 610 68.5
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.7e-210 735.3 474 78.3
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 3.7e-210 735.3 600 67.3
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 8.3e-210 734.2 595 66.1
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 2.4e-209 732.6 601 65.9
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.2e-208 730.3 600 64.5
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 1.0e-207 727.2 623 63.9
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 2.2e-207 726.1 513 73.9
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 2.9e-207 725.7 686 63.6
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 2.9e-207 725.7 593 65.4
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 3.8e-207 725.3 621 70.4
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 6.5e-207 724.5 584 65.4
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.1e-206 723.8 580 65.5
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.5e-206 723.4 631 62.4
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 2.5e-206 722.6 623 63.4
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 4.2e-206 721.8 627 62.4
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 5.5e-206 721.5 610 64.8
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 9.4e-206 720.7 602 64.8
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 2.1e-205 719.5 596 65.4
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 3.6e-205 718.8 592 65.9
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 8.0e-205 717.6 605 62.3
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 1.8e-204 716.5 609 64.2
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.8e-204 716.5 622 64.5
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 1.8e-204 716.5 618 65.7
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 6.8e-204 714.5 614 64.7
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 1.5e-203 713.4 569 69.9
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.5e-203 713.4 607 65.1
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 2.6e-203 712.6 506 72.5
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 7.5e-203 711.1 596 64.4
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 9.8e-203 710.7 590 65.9
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 1.7e-202 709.9 621 62.2
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 3.7e-202 708.8 528 70.5
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 8.3e-202 707.6 583 65.7
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 1.8e-201 706.4 608 63.7
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.4e-201 706.1 575 64.2
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 4.1e-201 705.3 583 65.4
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 4.1e-201 705.3 610 63.3
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 2.0e-200 703.0 603 65.5
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 2.0e-200 703.0 590 64.7
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 4.5e-200 701.8 635 63.8
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.9e-200 701.4 593 66.9
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 5.9e-200 701.4 590 63.7
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 7.7e-200 701.0 597 62.6
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 1.3e-199 700.3 604 62.4
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.7e-199 699.9 618 63.3
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.7e-199 699.9 567 65.6
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.1e-198 697.2 633 62.4
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.5e-198 696.0 625 61.6
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 3.3e-198 695.7 590 63.2
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 7.3e-198 694.5 584 63.4
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 4.7e-197 691.8 620 65.8
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 4.7e-197 691.8 611 63.8
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.8e-196 689.9 622 62.5
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 1.8e-196 689.9 591 64.5
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 3.0e-196 689.1 600 63.3
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 8.9e-196 687.6 627 65.6
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 1.2e-195 687.2 608 60.5
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 3.4e-195 685.6 593 61.6
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.4e-195 685.3 606 61.9
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.8e-193 679.9 616 60.4
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 3.2e-193 679.1 607 61.8
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 5.9e-192 674.9 611 59.6
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 2.3e-191 672.9 598 65.4
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 5.0e-191 671.8 641 58.5
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 6.6e-191 671.4 631 58.5
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 1.5e-190 670.2 601 59.7
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 3.3e-190 669.1 611 59.2
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 1.6e-189 666.8 615 59.8
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.6e-189 666.8 653 59.4
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 4.7e-189 665.2 608 60.0
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 4.7e-189 665.2 610 58.9
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 8.0e-189 664.5 610 59.0
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 2.3e-188 662.9 609 58.6
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 2.6e-187 659.4 666 58.9
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 4.4e-187 658.7 608 59.5
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 7.5e-187 657.9 653 58.0
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 6.4e-186 654.8 594 59.6
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.7e-184 649.4 608 59.9
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 2.3e-183 646.4 611 57.9
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 3.4e-179 632.5 608 61.5
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 9.8e-179 630.9 503 68.6
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 7.1e-177 624.8 588 58.5
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 2.1e-176 623.2 594 58.8
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 4.6e-176 622.1 578 58.3
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 3.9e-175 619.0 609 56.0
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 3.4e-171 605.9 466 67.4
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 2.2e-170 603.2 581 58.3
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 3.8e-170 602.4 582 56.9
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 1.3e-167 594.0 609 56.2
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 5.6e-166 588.6 566 58.3
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 4.9e-162 575.5 563 56.7
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.2e-161 572.8 588 55.6
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 3.5e-160 569.3 581 55.1
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 4.8e-157 558.9 515 64.7
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 5.3e-156 555.4 609 53.0
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 8.7e-151 538.1 586 53.2
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 4.3e-150 535.8 659 48.9
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 8.1e-149 531.6 464 61.0
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.1e-145 521.2 601 50.9
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.3e-141 507.7 567 52.9
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 6.9e-140 501.9 384 69.3
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 5.8e-139 498.8 612 47.5
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 7.4e-134 481.9 439 59.7
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.1e-133 480.3 338 72.8
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 3.4e-115 419.9 383 57.2
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 9.4e-113 411.8 316 69.9
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 1.1e-105 388.3 653 38.7
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.0e-103 380.2 334 62.3
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 5.3e-100 369.4 368 57.1
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 2.0e-70 271.2 163 87.1
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 9.8e-70 268.9 272 59.9
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 2.8e-64 250.8 252 61.5
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 5.4e-52 209.9 264 47.3
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 3.6e-48 197.2 138 76.1
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 6.2e-40 169.9 290 36.2
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 9.3e-36 156.0 476 24.8
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.4e-31 142.1 167 55.1
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 3.5e-27 127.5 560 23.0
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 8.2e-24 116.3 124 50.8
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 4.5e-22 110.5 76 64.5
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 1.1e-20 105.9 99 54.5
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 3.2e-20 104.4 84 60.7
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 1.2e-19 102.4 66 84.8
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 2.1e-19 101.7 72 69.4
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 5.1e-18 97.1 62 75.8
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 1.6e-16 92.0 83 60.2
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.1e-15 87.8 197 52.3
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 1.0e-13 82.8 101 48.5
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 3.2e-12 77.8 103 45.6
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 8.2e-08 63.2 35 82.9
Ca_07189_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 1.8e-07 62.0 243 27.2
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 2.4e-07 61.6 36 80.6
Glyma.17G238700 Glycine max HOM05D001905 ORTHO05D001820 3.1e-07 61.2 345 23.5
VMungo0647G1437 Vigna mungo HOM05D001905 ORTHO05D001820 9.1e-07 59.7 339 25.1
Phvul.001G024700 Phaseolus vulgaris HOM05D001905 ORTHO05D001820 2.0e-06 58.5 335 22.4
Ca_06859_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 2.6e-06 58.2 243 27.2
arahy.Tifrunner.gnm1.ann1.5E42VB Arachis hypogaea HOM05D004045 ORTHO05D083177 3.4e-06 57.8 36 86.1
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 4.5e-06 57.4 34 76.5


User provided reference genes

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