Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 1.5e-138 496.1 241 100.0
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 1.9e-96 356.3 242 73.1
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 1.7e-94 349.7 242 71.5
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 5.0e-94 348.2 243 72.0
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 3.3e-93 345.5 224 74.1
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 2.3e-91 339.3 232 70.7
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 3.1e-91 339.0 249 67.9
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 2.6e-90 335.9 235 71.1
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 1.7e-89 333.2 236 67.8
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 2.2e-89 332.8 223 70.9
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 8.3e-89 330.9 233 66.5
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 1.4e-88 330.1 244 65.6
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 5.4e-88 328.2 238 67.2
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 7.1e-88 327.8 224 69.2
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 9.2e-88 327.4 230 68.3
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 1.2e-87 327.0 251 65.3
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 6.0e-87 324.7 245 66.1
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 2.3e-86 322.8 229 68.6
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 5.1e-86 321.6 229 69.0
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 8.6e-86 320.9 243 66.7
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 1.5e-85 320.1 244 64.8
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 9.5e-85 317.4 251 62.2
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 1.6e-84 316.6 241 65.1
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 1.6e-84 316.6 228 68.0
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 2.1e-84 316.2 229 68.1
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 4.0e-83 312.0 214 67.3
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 5.2e-83 311.6 245 64.1
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 6.8e-83 311.2 237 65.0
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 8.9e-83 310.8 229 67.2
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 1.2e-82 310.5 233 63.9
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 5.8e-82 308.1 255 60.8
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 4.9e-81 305.1 239 62.3
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 4.9e-81 305.1 240 61.7
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 8.4e-81 304.3 221 65.6
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 1.1e-80 303.9 234 63.7
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 1.9e-80 303.1 234 61.5
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 5.4e-80 301.6 225 64.4
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 1.2e-79 300.4 226 63.7
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 1.6e-79 300.1 235 63.4
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 7.8e-79 297.7 227 62.6
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 7.8e-79 297.7 230 62.6
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 2.3e-78 296.2 241 60.6
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 5.1e-78 295.0 228 61.4
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 6.6e-78 294.7 244 60.7
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 1.5e-77 293.5 247 61.5
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 2.5e-77 292.7 234 62.4
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 2.1e-76 289.7 236 60.6
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 1.1e-75 287.3 237 57.4
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 2.6e-74 282.7 247 57.9
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 4.4e-74 282.0 230 58.3
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 5.8e-74 281.6 225 59.6
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 9.9e-74 280.8 260 57.7
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 1.7e-73 280.0 222 61.7
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 2.2e-73 279.6 206 61.7
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 2.9e-73 279.3 264 56.8
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 3.8e-73 278.9 224 59.8
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 3.8e-73 278.9 225 60.0
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 8.4e-73 277.7 225 57.3
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 8.4e-73 277.7 225 59.6
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 3.2e-72 275.8 223 60.5
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 3.0e-70 269.2 216 59.3
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 5.1e-70 268.5 206 57.8
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.5e-69 266.9 208 60.1
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 2.5e-69 266.2 216 59.3
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 5.6e-69 265.0 210 59.5
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 2.1e-68 263.1 211 56.9
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 3.6e-68 262.3 230 57.0
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 8.1e-68 261.2 230 58.3
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 5.3e-67 258.5 215 56.7
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 9.0e-67 257.7 212 58.0
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 2.4e-64 249.6 221 55.7
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 4.6e-63 245.4 229 54.6
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 1.3e-62 243.8 224 54.9
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 2.5e-61 239.6 262 48.1
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 4.3e-61 238.8 267 49.1
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 2.1e-60 236.5 208 54.8
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 2.1e-60 236.5 238 49.2
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 2.8e-60 236.1 264 50.0
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 3.6e-60 235.7 210 53.8
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 4.8e-60 235.3 208 54.3
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 8.1e-60 234.6 235 49.4
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 1.1e-59 234.2 249 47.8
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 1.8e-59 233.4 269 48.0
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 1.8e-59 233.4 269 48.0
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.8e-59 233.4 221 52.0
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 3.1e-59 232.6 269 48.7
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 3.1e-59 232.6 269 48.7
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 3.1e-59 232.6 269 48.7
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 5.3e-59 231.9 260 50.0
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 5.3e-59 231.9 210 53.8
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 6.9e-59 231.5 262 48.1
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 9.9e-58 227.6 208 52.9
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.7e-57 226.9 230 50.4
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 2.2e-57 226.5 267 47.6
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 3.8e-57 225.7 265 48.7
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 4.9e-57 225.3 229 47.2
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 6.4e-57 224.9 195 55.4
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 2.1e-55 219.9 267 46.4
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 2.1e-55 219.9 233 47.2
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 1.3e-54 217.2 189 53.4
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 3.3e-53 212.6 276 42.8
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 8.4e-49 198.0 209 49.3
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 7.1e-48 194.9 124 75.8
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 8.7e-46 188.0 129 72.1
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 1.5e-45 187.2 202 45.5
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 3.3e-45 186.0 201 46.8
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 1.1e-43 181.0 146 62.3
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 2.4e-43 179.9 195 45.1
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 5.3e-43 178.7 202 47.0
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 5.9e-42 175.3 212 46.7
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 2.2e-41 173.3 158 58.9
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.7e-39 166.4 195 42.1
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 3.0e-38 162.9 192 49.0
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 1.5e-37 160.6 137 60.6
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 1.2e-31 141.0 182 42.9
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 1.8e-30 137.1 238 37.0
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.0e-29 133.7 213 37.1
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.7e-28 130.6 217 36.9
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 7.7e-26 121.7 234 33.3
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 7.7e-26 121.7 232 33.2
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 1.7e-25 120.6 110 50.0
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 2.2e-25 120.2 229 32.3
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 2.2e-25 120.2 213 32.9
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 2.6e-18 96.7 278 29.9
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 1.8e-14 84.0 101 42.6
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 6.7e-14 82.0 224 29.0
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 2.0e-13 80.5 56 60.7
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 2.4e-11 73.6 103 39.8
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 3.1e-11 73.2 58 50.0
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 7.0e-11 72.0 103 38.8
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 5.9e-10 68.9 159 27.7


User provided reference genes

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