Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 4.9e-279 963.8 468 100.0
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 3.6e-221 771.5 468 78.4
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 2.0e-219 765.8 469 79.1
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 1.8e-209 732.6 467 76.0
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 4.3e-206 721.5 467 75.4
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 4.7e-205 718.0 467 73.0
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 3.1e-204 715.3 466 73.4
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 4.9e-202 708.0 467 72.6
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 4.1e-201 704.9 465 72.3
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 4.1e-201 704.9 473 73.4
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 2.1e-197 692.6 464 72.2
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 8.0e-197 690.6 473 70.6
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 1.4e-196 689.9 474 69.8
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 2.3e-196 689.1 462 71.6
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 6.8e-196 687.6 462 71.4
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 6.8e-196 687.6 467 70.7
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 3.4e-195 685.3 462 71.6
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 9.2e-193 677.2 473 70.0
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 4.6e-192 674.9 462 70.3
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 1.0e-191 673.7 466 70.0
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 6.6e-191 671.0 422 76.5
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 2.1e-189 666.0 462 69.3
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 8.1e-189 664.1 477 69.6
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 3.1e-188 662.1 467 67.7
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 6.8e-188 661.0 466 68.7
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 1.3e-186 656.8 461 68.5
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 1.7e-186 656.4 469 69.9
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 9.2e-185 650.6 474 69.2
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 1.3e-183 646.7 460 68.3
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 1.7e-183 646.4 472 66.9
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 5.1e-183 644.8 470 66.6
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 8.6e-183 644.0 468 66.9
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 7.3e-182 641.0 465 66.0
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 1.2e-181 640.2 467 65.5
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 3.6e-181 638.6 464 65.3
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 5.2e-180 634.8 468 65.8
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 6.8e-180 634.4 468 66.2
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 1.5e-179 633.3 462 67.3
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 2.0e-179 632.9 474 66.9
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 1.3e-178 630.2 468 66.2
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 3.8e-178 628.6 468 65.0
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 4.2e-177 625.2 473 66.4
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 9.2e-177 624.0 467 64.7
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.9e-174 616.3 461 64.2
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 7.3e-174 614.4 502 60.4
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 9.6e-174 614.0 482 65.6
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 9.6e-174 614.0 461 64.2
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 4.8e-173 611.7 471 63.3
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 2.4e-172 609.4 466 63.5
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 6.9e-172 607.8 494 61.1
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 1.5e-171 606.7 500 60.2
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 2.0e-171 606.3 522 60.3
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 1.2e-168 597.0 472 63.8
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 3.5e-168 595.5 461 65.3
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 1.3e-167 593.6 465 62.2
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 5.1e-167 591.7 466 63.7
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 1.5e-166 590.1 465 61.7
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 1.9e-166 589.7 461 61.8
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 2.5e-166 589.3 463 63.1
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 3.3e-166 589.0 461 62.0
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 2.8e-165 585.9 467 62.3
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 3.6e-165 585.5 463 62.2
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 8.1e-165 584.3 463 61.3
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 8.1e-165 584.3 468 61.5
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 8.1e-165 584.3 468 61.5
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 1.1e-164 583.9 471 63.3
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 1.2e-163 580.5 466 61.4
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 3.4e-163 578.9 464 62.3
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 1.3e-162 577.0 469 61.2
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 1.7e-162 576.6 461 61.8
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 4.9e-162 575.1 461 61.8
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 1.1e-161 573.9 464 61.2
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 1.9e-161 573.2 462 61.3
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 4.2e-161 572.0 464 61.6
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 4.2e-161 572.0 464 61.6
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 1.8e-159 566.6 420 68.1
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 3.0e-159 565.8 464 62.1
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 5.6e-158 561.6 459 61.7
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 1.6e-157 560.1 467 60.0
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 4.8e-157 558.5 494 57.7
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 9.0e-156 554.3 492 57.9
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 1.7e-154 550.1 445 60.9
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 8.4e-154 547.7 476 59.7
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 3.2e-153 545.8 478 56.9
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 1.3e-151 540.4 493 55.0
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 1.3e-149 533.9 460 59.3
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 1.7e-146 523.5 360 71.7
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 6.5e-146 521.5 346 72.3
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 4.1e-140 502.3 428 58.9
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 5.3e-140 501.9 391 65.7
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 3.2e-137 492.7 389 64.5
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 6.1e-136 488.4 331 71.9
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 1.4e-135 487.3 491 52.7
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.5e-134 483.8 378 65.3
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 1.7e-133 480.3 462 51.3
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 4.8e-133 478.8 463 53.6
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 2.2e-117 426.8 385 55.1
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 7.5e-110 401.7 515 40.8
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 5.0e-106 389.0 474 44.5
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 3.0e-103 379.8 485 41.2
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 5.2e-103 379.0 473 43.3
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 3.4e-102 376.3 352 56.8
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 1.7e-101 374.0 287 65.9
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 4.2e-97 359.4 438 46.6
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 1.4e-92 344.4 466 38.0
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 6.8e-79 298.9 466 38.0
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 4.4e-62 243.0 256 48.8
MD17G1281000 Malus domestica HOM05D006460 ORTHO05D008143 1.2e-51 208.4 234 49.1
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 5.6e-49 199.5 470 30.0
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 6.9e-47 192.6 278 39.6
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 3.8e-45 186.8 488 29.9
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 7.9e-43 179.1 155 61.3
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.3e-42 177.6 155 60.6
QL04p085746 Quercus lobata HOM05D006460 ORTHO05D008143 3.9e-42 176.8 108 80.6
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 8.7e-42 175.6 227 40.1
QL05p033637 Quercus lobata HOM05D000101 ORTHO05D000089 2.9e-29 134.0 68 91.2
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 6.1e-27 126.3 813 20.4
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 1.7e-21 108.2 91 52.7
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 5.5e-20 103.2 233 32.6
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 5.5e-20 103.2 78 66.7
Hund09679 Selenicereus undatus HOM05D006460 ORTHO05D008143 2.5e-17 94.4 143 40.6
AUR62007801 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.4e-15 88.6 79 58.2
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 9.7e-09 65.9 75 48.0
AUR62043166 Chenopodium quinoa HOM05D006460 ORTHO05D008143 4.8e-08 63.5 64 56.2
CDE02G3709 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 8.2e-08 62.8 46 63.0
CSS0016884 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 9.1e-07 59.3 65 47.7
CSS0037496 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 9.1e-07 59.3 65 47.7


User provided reference genes

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