Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 5.7e-92 340.9 170 100.0
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 1.2e-89 333.2 170 97.6
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 3.4e-89 331.6 170 97.6
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 3.4e-89 331.6 170 97.6
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 8.0e-78 293.9 170 83.5
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 7.5e-76 287.3 170 80.6
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 1.7e-75 286.2 165 83.6
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 4.1e-74 281.6 170 78.8
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 5.3e-74 281.2 170 81.2
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 1.6e-73 279.6 167 80.2
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 1.3e-72 276.6 169 80.5
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 1.3e-72 276.6 170 80.0
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 1.7e-72 276.2 169 77.5
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 1.7e-72 276.2 170 79.4
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 2.9e-72 275.4 169 78.1
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 1.1e-71 273.5 165 80.0
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 1.9e-71 272.7 154 87.0
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 1.9e-71 272.7 154 87.0
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 4.2e-71 271.6 168 79.8
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 7.2e-71 270.8 170 75.9
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 3.6e-70 268.5 169 78.7
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 6.1e-70 267.7 171 77.8
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 6.1e-70 267.7 205 66.8
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 6.8e-69 264.2 167 78.4
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 2.6e-68 262.3 169 74.6
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 2.8e-67 258.8 171 74.3
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.4e-66 256.5 163 77.3
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 1.4e-66 256.5 163 77.3
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 7.0e-66 254.2 168 73.2
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 9.1e-66 253.8 163 74.8
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 9.1e-66 253.8 166 74.1
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 2.0e-65 252.7 163 77.3
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 2.0e-65 252.7 163 74.2
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 2.0e-65 252.7 163 76.1
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 3.5e-65 251.9 169 74.0
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 3.5e-65 251.9 185 69.7
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 5.9e-65 251.1 166 72.9
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.3e-64 250.0 171 71.9
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 1.1e-63 246.9 169 71.0
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.5e-63 246.5 163 71.2
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.5e-63 246.5 163 71.2
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 2.5e-63 245.7 170 68.2
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 3.2e-63 245.4 166 71.7
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 4.2e-63 245.0 163 72.4
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 7.2e-63 244.2 167 70.7
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 9.5e-63 243.8 171 70.8
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 1.2e-62 243.4 170 72.9
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 1.2e-62 243.4 163 71.8
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 3.6e-62 241.9 167 71.9
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 3.6e-62 241.9 163 71.2
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 8.0e-62 240.7 171 71.9
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 1.4e-61 240.0 154 75.3
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 1.8e-61 239.6 155 75.5
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 5.2e-61 238.0 169 71.0
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 5.2e-61 238.0 165 70.9
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 5.7e-60 234.6 167 71.9
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 7.5e-60 234.2 168 67.9
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 9.8e-60 233.8 168 69.0
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 1.3e-59 233.4 171 69.0
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 1.7e-59 233.0 182 61.5
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.2e-59 232.6 171 66.7
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 8.3e-59 230.7 166 66.9
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.0e-57 226.1 168 70.2
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 2.0e-57 226.1 167 65.3
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 5.9e-57 224.6 154 72.1
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 1.0e-56 223.8 171 63.7
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 1.0e-56 223.8 169 68.6
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 1.3e-56 223.4 154 70.8
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 8.6e-56 220.7 171 63.7
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 3.3e-55 218.8 168 63.7
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 4.3e-55 218.4 166 63.3
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 2.1e-54 216.1 170 64.1
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 2.1e-54 216.1 170 64.1
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 3.6e-54 215.3 170 62.9
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 4.7e-54 214.9 170 63.5
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 4.7e-54 214.9 170 63.5
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 4.7e-54 214.9 170 63.5
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 6.1e-54 214.5 170 62.4
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 1.0e-53 213.8 170 64.1
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 1.4e-53 213.4 171 63.7
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 1.4e-53 213.4 171 63.7
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 1.4e-53 213.4 170 62.9
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 1.8e-53 213.0 171 63.7
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 1.8e-53 213.0 170 63.5
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 8.9e-53 210.7 129 80.6
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 3.4e-52 208.8 173 63.0
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 4.4e-52 208.4 173 63.0
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 4.4e-52 208.4 173 63.0
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 4.4e-52 208.4 170 62.4
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 1.1e-50 203.8 168 62.5
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.4e-50 202.6 152 70.4
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 1.3e-48 196.8 167 59.9
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.3e-48 196.8 124 76.6
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 1.9e-47 193.0 162 58.0
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 2.5e-47 192.6 170 57.6
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 5.6e-47 191.4 167 59.3
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 4.1e-42 175.3 171 55.0
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 2.7e-41 172.6 113 72.6
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 4.3e-39 165.2 183 47.0
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 3.6e-38 162.2 183 47.0
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 4.0e-37 158.7 169 46.2
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 5.8e-36 154.8 165 50.3
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-33 145.6 180 48.9
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-32 143.3 179 41.9
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 2.3e-32 142.9 180 47.2
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 8.1e-30 134.4 175 49.1
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 1.1e-29 134.0 109 58.7
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-29 132.1 165 47.9
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 4.4e-28 128.6 112 61.6
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-27 127.1 189 40.2
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 8.4e-27 124.4 116 55.2
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-26 124.0 182 41.2
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-26 123.2 185 40.0
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 7.1e-26 121.3 177 41.2
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-25 119.8 178 37.6
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 2.7e-25 119.4 75 70.7
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 2.5e-23 112.8 141 40.4
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 3.3e-23 112.5 70 78.6
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 1.6e-22 110.2 108 57.4
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-22 109.8 174 39.1
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 4.7e-22 108.6 142 40.8
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-20 104.0 164 36.6
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-20 103.6 136 40.4
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 9.9e-20 100.9 76 65.8
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 2.9e-19 99.4 112 55.4
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 6.4e-19 98.2 164 33.5
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 2.4e-18 96.3 138 39.9
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 7.1e-18 94.7 165 35.2
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-17 94.0 169 37.3
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 4.6e-17 92.0 173 36.4
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 4.6e-17 92.0 46 97.8
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-16 90.1 180 34.4
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 6.6e-16 88.2 109 46.8
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.1e-15 87.4 153 33.3
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.5e-15 87.0 109 45.0
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 4.3e-15 85.5 152 36.2
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-14 84.0 167 31.7
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-14 83.6 176 32.4
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-14 83.2 171 30.4
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 3.6e-14 82.4 166 30.7
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 6.2e-14 81.6 146 33.6
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-13 80.9 166 30.1
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-13 79.0 131 34.4
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-12 77.0 188 30.3
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 4.5e-12 75.5 158 29.7
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 7.6e-12 74.7 124 33.9
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 4.9e-11 72.0 172 28.5
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 7.1e-10 68.2 106 38.7
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-09 66.6 172 29.7
Atru.chr12.1394 Acer truncatum HOM05D004737 ORTHO05D005623 6.7e-08 61.6 180 26.1
Atru.chr5.2738 Acer truncatum HOM05D004737 ORTHO05D005623 6.7e-08 61.6 126 30.2
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 6.7e-08 61.6 132 28.8
Atru.chr6.94 Acer truncatum HOM05D004737 ORTHO05D005623 5.6e-07 58.5 64 48.4
Medtr5g038850 Medicago truncatula HOM05D004737 ORTHO05D005623 9.6e-07 57.8 128 31.2


User provided reference genes

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