Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 4.8e-91 337.8 170 100.0
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 4.8e-91 337.8 170 100.0
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 5.9e-89 330.9 170 97.6
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 1.2e-86 323.2 170 95.3
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 9.7e-76 287.0 170 82.4
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 8.2e-75 283.9 170 80.0
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 2.0e-73 279.3 170 81.2
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 2.0e-73 279.3 165 82.4
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 2.2e-72 275.8 167 80.2
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 5.0e-72 274.6 170 77.6
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 5.0e-72 274.6 170 80.0
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 1.5e-71 273.1 169 76.9
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 1.9e-71 272.7 170 78.8
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 3.2e-71 271.9 169 79.3
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 3.2e-71 271.9 169 77.5
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.6e-70 269.6 170 76.5
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 4.7e-70 268.1 168 79.2
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 1.4e-69 266.5 169 78.7
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 4.0e-69 265.0 165 78.2
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 8.8e-69 263.8 154 85.1
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 8.8e-69 263.8 154 85.1
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 2.0e-68 262.7 171 76.6
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 2.6e-68 262.3 167 78.4
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 7.5e-68 260.8 205 65.9
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 9.8e-68 260.4 169 74.6
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 6.3e-67 257.7 171 74.9
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 5.4e-66 254.6 163 77.3
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 5.4e-66 254.6 163 77.3
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 9.1e-66 253.8 185 70.3
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 1.2e-65 253.4 163 75.5
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 2.7e-65 252.3 163 74.8
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 7.7e-65 250.8 163 76.1
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 2.2e-64 249.2 163 76.7
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 2.2e-64 249.2 166 72.9
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 2.2e-64 249.2 168 72.6
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 2.9e-64 248.8 166 72.9
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 1.1e-63 246.9 169 71.6
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.5e-63 246.5 171 71.3
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 5.5e-63 244.6 170 68.8
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 5.5e-63 244.6 163 71.2
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 5.5e-63 244.6 163 71.2
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 1.2e-62 243.4 169 72.2
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 1.6e-62 243.0 160 75.0
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 8.0e-62 240.7 167 70.1
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 1.0e-61 240.4 166 70.5
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 4.0e-61 238.4 167 71.3
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 5.2e-61 238.0 163 71.2
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 8.8e-61 237.3 171 71.3
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 1.5e-60 236.5 163 70.6
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 2.0e-60 236.1 154 74.7
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 2.0e-60 236.1 171 69.6
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 4.4e-60 235.0 170 71.2
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 4.4e-60 235.0 163 69.9
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-59 233.0 169 69.8
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 1.7e-59 233.0 165 69.7
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 2.2e-59 232.6 167 71.9
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 8.3e-59 230.7 168 68.5
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 8.3e-59 230.7 168 67.3
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.1e-58 230.3 166 67.5
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 7.0e-58 227.6 171 65.5
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 2.7e-57 225.7 171 67.8
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 2.7e-57 225.7 182 60.4
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 1.7e-56 223.0 154 71.4
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 2.3e-56 222.6 171 64.3
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.9e-56 222.2 168 69.6
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 1.5e-55 219.9 169 68.0
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 1.9e-55 219.5 167 64.1
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 2.5e-55 219.2 154 70.8
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 3.3e-55 218.8 171 63.7
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 3.6e-54 215.3 168 63.1
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 6.8e-53 211.1 166 62.0
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 8.9e-53 210.7 170 62.9
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 8.9e-53 210.7 170 62.9
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 1.5e-52 209.9 170 61.8
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 2.0e-52 209.5 170 62.4
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 2.0e-52 209.5 170 62.4
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 2.0e-52 209.5 170 62.4
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 2.6e-52 209.1 129 79.8
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 2.6e-52 209.1 170 61.2
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 4.4e-52 208.4 170 62.9
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 5.7e-52 208.0 171 62.6
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 5.7e-52 208.0 171 62.6
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 5.7e-52 208.0 170 61.8
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 7.5e-52 207.6 171 62.6
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 7.5e-52 207.6 170 62.4
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.1e-50 203.8 173 61.8
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 1.4e-50 203.4 173 61.8
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 1.4e-50 203.4 173 61.8
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 1.8e-50 203.0 170 61.2
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 3.5e-49 198.7 152 69.7
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 3.9e-48 195.3 168 60.7
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 5.0e-48 194.9 124 76.6
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 8.6e-48 194.1 167 59.3
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 1.5e-47 193.4 162 58.6
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 1.9e-47 193.0 167 59.9
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 8.0e-46 187.6 170 56.5
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 3.5e-41 172.2 113 72.6
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 3.9e-40 168.7 171 53.8
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 1.6e-38 163.3 183 47.0
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 1.4e-37 160.2 183 47.0
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.3e-35 153.7 169 45.0
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-34 150.2 165 49.1
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 5.1e-32 141.7 179 41.9
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 6.6e-32 141.4 180 47.8
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 4.3e-31 138.7 180 46.1
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 4.0e-29 132.1 109 57.8
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 5.8e-28 128.3 175 47.4
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 9.9e-28 127.5 165 46.7
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 2.9e-27 125.9 185 41.1
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 1.9e-26 123.2 116 54.3
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 3.2e-26 122.5 182 41.2
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 9.2e-26 120.9 112 59.8
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 2.7e-25 119.4 75 70.7
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 7.8e-25 117.9 185 38.9
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 5.1e-24 115.2 163 38.7
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 6.6e-24 114.8 178 36.5
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 8.6e-24 114.4 177 39.0
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 1.6e-22 110.2 108 57.4
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 3.6e-22 109.0 163 39.3
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 6.2e-22 108.2 70 75.7
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 5.2e-21 105.1 174 37.9
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-20 104.0 136 40.4
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 7.6e-20 101.3 164 36.0
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 5.4e-18 95.1 164 32.9
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 5.4e-18 95.1 138 39.9
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 7.1e-18 94.7 76 63.2
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 9.3e-18 94.4 112 53.6
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 2.7e-17 92.8 165 35.2
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 4.6e-17 92.0 46 97.8
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 3.0e-16 89.4 169 36.1
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 5.1e-16 88.6 180 34.4
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 6.6e-16 88.2 153 33.3
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 8.7e-16 87.8 109 45.0
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 1.1e-15 87.4 173 35.3
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-15 86.7 109 45.9
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-14 84.0 152 35.5
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 4.8e-14 82.0 167 31.7
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 6.2e-14 81.6 166 31.3
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 1.4e-13 80.5 171 30.4
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-13 80.1 146 33.6
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 2.4e-13 79.7 166 30.7
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-13 79.0 131 34.4
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 5.8e-12 75.1 188 31.9
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 5.8e-12 75.1 176 30.7
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 2.9e-11 72.8 158 29.1
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-10 70.9 124 33.1
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-09 67.0 172 27.3
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 2.7e-09 66.2 106 37.7
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 2.3e-08 63.2 172 29.1
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 5.1e-08 62.0 114 30.7
Atru.chr5.2738 Acer truncatum HOM05D004737 ORTHO05D005623 1.5e-07 60.5 126 30.2
Atru.chr12.1394 Acer truncatum HOM05D004737 ORTHO05D005623 1.6e-06 57.0 180 25.0
Atru.chr6.94 Acer truncatum HOM05D004737 ORTHO05D005623 3.7e-06 55.8 64 46.9
Medtr5g038850 Medicago truncatula HOM05D004737 ORTHO05D005623 8.1e-06 54.7 128 30.5


User provided reference genes

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