Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 4.4e-186 654.4 324 100.0
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 5.7e-125 451.4 235 93.6
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 2.4e-99 366.3 236 75.0
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 5.9e-98 361.7 237 74.3
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 7.7e-98 361.3 236 73.7
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 2.9e-97 359.4 236 74.6
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 3.3e-96 355.9 236 73.7
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 1.0e-94 350.9 236 72.0
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 2.3e-94 349.7 263 68.4
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 4.4e-93 345.5 236 71.6
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 5.7e-93 345.1 237 70.9
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 7.5e-93 344.7 236 71.6
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 7.5e-93 344.7 236 69.9
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.3e-92 344.0 236 70.8
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.7e-92 343.6 236 72.9
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 1.7e-92 343.6 236 72.5
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 1.7e-92 343.6 236 72.0
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.8e-92 342.8 237 70.5
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.8e-92 342.8 237 70.9
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 3.7e-92 342.4 236 71.2
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.9e-92 342.0 236 71.2
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.4e-91 340.5 237 70.5
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.4e-91 340.5 237 70.9
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 2.4e-91 339.7 236 70.3
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 3.2e-91 339.3 236 70.8
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 4.1e-91 339.0 237 71.3
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 5.4e-91 338.6 248 67.3
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 7.0e-91 338.2 236 71.2
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 2.0e-90 336.7 236 68.2
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 2.7e-90 336.3 242 69.0
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 4.5e-90 335.5 237 67.9
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.3e-89 334.0 237 70.0
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 1.3e-89 334.0 236 68.6
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 1.7e-89 333.6 238 68.1
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 2.9e-89 332.8 237 67.5
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 2.9e-89 332.8 242 68.2
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 2.9e-89 332.8 238 67.6
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 3.9e-89 332.4 236 68.2
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 1.1e-88 330.9 234 71.8
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 1.5e-88 330.5 233 68.7
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 2.1e-87 326.6 272 62.1
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 4.7e-87 325.5 236 66.5
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 6.1e-87 325.1 233 67.4
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 8.0e-87 324.7 237 69.6
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 8.0e-87 324.7 245 66.5
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 3.1e-86 322.8 237 69.6
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 3.1e-86 322.8 241 64.7
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 3.1e-86 322.8 254 64.6
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 3.1e-86 322.8 236 65.7
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 5.2e-86 322.0 237 67.1
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 6.8e-86 321.6 257 63.8
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 6.8e-86 321.6 242 65.3
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 1.5e-85 320.5 236 67.8
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 1.5e-85 320.5 235 66.0
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 3.4e-85 319.3 246 64.2
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 5.8e-85 318.5 237 65.8
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 1.7e-84 317.0 244 64.8
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 3.7e-84 315.8 241 66.8
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 8.3e-84 314.7 236 64.4
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.4e-83 313.9 236 64.8
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.9e-83 313.5 238 63.0
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 3.2e-83 312.8 237 63.7
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 4.1e-83 312.4 219 67.1
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 5.4e-83 312.0 235 66.4
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 7.0e-83 311.6 236 64.8
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 9.2e-83 311.2 236 65.7
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 1.6e-82 310.5 236 65.3
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.6e-82 310.5 243 65.8
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 2.0e-82 310.1 236 62.7
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 2.7e-82 309.7 236 64.0
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 3.5e-82 309.3 236 65.3
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 4.6e-82 308.9 235 64.3
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 4.6e-82 308.9 236 64.0
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 6.0e-82 308.5 236 63.1
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 7.8e-82 308.1 244 62.7
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 1.7e-81 307.0 235 64.3
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 3.9e-81 305.8 236 63.1
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 6.6e-81 305.1 238 63.4
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 1.5e-80 303.9 242 64.0
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 2.5e-80 303.1 236 62.3
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 3.3e-80 302.8 235 63.8
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.3e-80 302.8 235 63.8
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 5.6e-80 302.0 236 63.6
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.2e-79 300.8 233 61.4
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 1.6e-79 300.4 236 64.0
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 2.1e-79 300.1 238 63.4
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 2.1e-79 300.1 236 63.6
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 3.6e-79 299.3 233 60.9
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 3.6e-79 299.3 236 64.0
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 3.6e-79 299.3 239 59.4
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 6.2e-79 298.5 239 61.5
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 1.8e-78 297.0 296 54.1
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 4.0e-78 295.8 236 62.7
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 4.0e-78 295.8 236 62.7
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 6.8e-78 295.0 265 58.5
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 2.0e-77 293.5 236 62.3
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 2.0e-77 293.5 239 61.9
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 2.6e-77 293.1 236 60.6
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.3e-76 290.8 250 58.0
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 2.9e-76 289.7 268 57.8
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 7.1e-75 285.0 236 59.7
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.2e-74 284.3 237 60.3
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 1.2e-74 284.3 211 64.5
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 1.6e-74 283.9 236 57.6
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 1.6e-74 283.9 236 57.6
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 2.1e-74 283.5 195 69.7
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 2.1e-74 283.5 202 66.8
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 5.1e-73 278.9 191 69.1
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 5.1e-73 278.9 231 60.6
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 7.3e-72 275.0 236 55.9
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 9.5e-72 274.6 238 58.0
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 3.6e-71 272.7 229 60.7
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 6.2e-71 271.9 191 69.6
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.4e-70 270.8 237 57.4
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 2.6e-69 266.5 190 67.4
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 2.6e-69 266.5 251 52.6
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 4.4e-69 265.8 174 74.7
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 7.6e-69 265.0 157 79.6
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.4e-67 260.8 326 49.1
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 4.6e-66 255.8 211 58.8
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 4.6e-66 255.8 191 62.3
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 7.8e-66 255.0 240 57.5
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 7.8e-66 255.0 212 58.5
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 3.0e-65 253.1 195 64.6
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 5.1e-65 252.3 191 64.4
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 6.2e-63 245.4 174 69.0
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 7.6e-61 238.4 182 62.6
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 2.2e-60 236.9 230 53.9
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 2.4e-59 233.4 236 53.4
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 7.1e-59 231.9 171 66.7
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 1.2e-58 231.1 178 59.6
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 4.6e-58 229.2 159 69.8
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 3.0e-57 226.5 171 67.8
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 4.4e-53 212.6 149 70.5
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 1.9e-51 207.2 145 68.3
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.4e-51 206.8 136 69.9
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.1e-50 203.8 136 69.9
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.6e-50 202.6 357 37.5
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 2.3e-49 200.3 133 69.9
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.8e-47 192.6 136 67.6
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 6.4e-44 182.2 201 50.7
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 3.3e-40 169.9 134 61.2
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 4.3e-40 169.5 117 68.4
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.8e-38 164.1 155 52.3
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 7.6e-37 158.7 156 55.1
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 3.2e-35 153.3 208 39.4
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.2e-34 151.4 136 55.1
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.4e-29 133.3 172 42.4
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 5.0e-28 129.4 260 34.6
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 8.4e-28 128.6 99 62.6
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.0e-25 120.2 165 43.0
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 1.5e-24 117.9 266 30.1
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.0e-21 107.5 94 57.4
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 5.9e-21 105.9 76 64.5
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.0e-17 93.6 83 56.6
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.5e-16 91.3 118 40.7
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 4.3e-16 89.7 60 68.3
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 2.4e-14 84.0 76 53.9
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 2.9e-12 77.0 87 47.1
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.6e-10 71.2 49 59.2
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 1.5e-08 64.7 51 58.8
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 3.3e-08 63.5 44 59.1
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 3.3e-08 63.5 44 59.1
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 8.2e-07 58.9 34 76.5
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 5.3e-06 56.2 51 56.9


User provided reference genes

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