Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1444.9 707 100.0
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1272.3 693 87.6
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1264.2 703 86.9
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1261.1 693 87.6
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1222.6 693 84.6
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1219.9 689 84.3
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1209.1 691 83.4
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1206.0 693 83.4
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1196.8 693 82.1
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1196.4 693 82.7
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1194.9 693 82.1
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1193.7 692 82.5
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1190.6 693 82.4
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1188.3 693 81.7
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1186.0 692 83.7
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1183.3 692 82.1
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1182.9 692 82.5
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1179.9 693 81.5
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1174.1 704 80.0
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1172.1 692 81.4
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1169.8 692 81.6
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1167.1 693 81.1
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1165.6 689 81.0
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1161.7 691 79.9
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1161.7 710 79.2
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1161.0 693 80.4
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1160.2 692 80.5
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1157.9 689 80.6
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1157.5 688 80.5
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1156.0 690 80.6
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1152.5 692 80.1
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1152.1 692 78.9
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1152.1 693 80.1
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1151.3 693 80.2
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1151.0 692 79.8
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1148.7 692 79.6
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1146.0 691 79.9
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1144.4 691 78.9
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1144.0 687 79.2
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1143.6 693 79.5
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1141.7 708 78.1
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1138.3 690 78.4
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1135.2 689 77.8
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1133.6 689 79.5
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1125.2 696 78.7
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1124.4 687 79.6
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1121.3 686 77.3
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1117.4 691 77.1
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1117.4 687 78.3
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1115.9 687 78.2
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 0.0e+00 1114.0 662 80.5
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1113.2 687 78.3
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1113.2 687 77.9
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1113.2 691 78.1
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1112.4 687 77.9
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1111.7 691 77.1
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1108.2 690 78.4
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1107.8 687 77.7
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1105.1 702 77.4
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1103.6 687 77.9
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1100.5 688 77.2
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1099.7 721 74.1
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1099.0 706 76.9
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1096.6 686 76.4
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1094.3 687 76.3
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 0.0e+00 1083.9 688 75.9
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1079.7 697 74.6
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 5.8e-311 1070.5 707 74.0
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 1.3e-310 1069.3 687 76.3
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 4.0e-309 1064.3 724 72.1
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 2.9e-307 1058.1 682 75.4
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 4.9e-307 1057.4 625 81.1
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 1.1e-306 1056.2 687 73.5
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 1.4e-306 1055.8 688 74.0
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 1.9e-306 1055.4 687 73.7
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 9.3e-306 1053.1 687 73.5
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 2.1e-305 1052.0 688 73.7
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 2.7e-305 1051.6 687 73.5
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 7.9e-305 1050.0 687 73.2
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 1.8e-304 1048.9 687 73.8
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 2.3e-304 1048.5 687 73.5
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 5.1e-304 1047.3 687 72.9
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 8.7e-304 1046.6 687 73.1
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 9.6e-303 1043.1 687 73.4
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 3.7e-302 1041.2 684 73.1
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 1.3e-299 1032.7 686 73.9
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 2.1e-297 1025.4 742 68.3
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 2.7e-297 1025.0 664 73.5
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 6.5e-291 1003.8 664 73.0
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 2.5e-290 1001.9 691 71.9
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 6.7e-288 993.8 731 67.4
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 3.3e-287 991.5 752 67.3
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.0e-275 953.4 610 76.4
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 2.9e-259 898.7 640 66.6
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 4.1e-253 878.2 694 59.5
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 2.9e-251 872.1 687 65.2
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 2.8e-249 865.5 688 60.3
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 8.0e-249 864.0 628 65.9
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 1.5e-239 833.2 692 58.2
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-225 786.2 662 56.2
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 4.0e-216 755.4 522 69.2
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 5.5e-157 558.9 607 51.6
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 2.3e-142 510.4 825 38.1
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 2.5e-117 427.2 304 64.5
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 6.0e-95 352.8 268 63.1
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 3.0e-94 350.5 225 72.9
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 7.6e-90 335.9 289 63.3
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 6.4e-81 306.2 226 68.1
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.3e-76 292.0 241 63.9
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 2.8e-60 237.7 148 75.0
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 1.8e-46 191.8 122 73.8
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 3.0e-46 191.0 143 65.0
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 4.4e-45 187.2 127 68.5
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 1.5e-29 135.6 93 69.9
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 1.6e-26 125.6 157 47.1
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 3.3e-24 117.9 107 51.4
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 5.4e-19 100.5 110 53.6
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 8.6e-17 93.2 62 72.6
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 1.0e-14 86.3 56 75.0
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 9.2e-11 73.2 43 72.1
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 1.9e-08 65.5 41 75.6
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 4.3e-08 64.3 39 76.9


User provided reference genes

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