Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 6.1e-233 810.4 412 100.0
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 1.5e-202 709.5 411 86.4
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 6.8e-200 700.7 411 86.4
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 2.6e-199 698.7 411 85.9
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 1.5e-191 672.9 409 80.4
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 2.0e-191 672.5 411 80.3
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 2.6e-191 672.2 412 81.8
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.3e-190 669.8 411 81.0
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 1.3e-190 669.8 412 81.8
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.9e-190 668.7 409 80.2
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 4.9e-190 667.9 411 80.3
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 6.4e-190 667.5 413 81.4
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 6.4e-190 667.5 412 81.1
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.1e-189 666.8 414 80.7
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 1.1e-189 666.8 412 81.1
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 1.4e-189 666.4 409 80.0
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 2.4e-189 665.6 411 80.3
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.2e-189 665.2 409 79.7
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.2e-189 664.8 409 80.0
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 7.1e-189 664.1 409 79.5
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 9.3e-189 663.7 411 80.0
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.2e-188 663.3 414 80.9
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 2.1e-188 662.5 412 79.6
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 6.0e-188 661.0 414 80.4
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 7.8e-188 660.6 413 80.6
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.3e-187 659.8 411 78.3
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 3.0e-187 658.7 415 79.5
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 2.5e-186 655.6 412 78.9
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 4.3e-186 654.8 412 79.1
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 4.3e-186 654.8 413 79.4
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 1.3e-185 653.3 411 78.8
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 1.6e-185 652.9 411 78.8
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 2.8e-185 652.1 411 79.1
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 2.8e-185 652.1 411 79.8
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 8.1e-185 650.6 409 79.0
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 1.4e-184 649.8 411 79.8
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 4.0e-184 648.3 413 78.0
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 4.0e-184 648.3 413 78.7
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 4.0e-184 648.3 411 78.1
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 6.9e-184 647.5 413 78.5
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 9.0e-184 647.1 413 77.7
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 1.5e-183 646.4 409 77.5
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 1.5e-183 646.4 411 77.6
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 3.4e-183 645.2 411 77.4
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 4.5e-183 644.8 413 77.7
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 4.5e-183 644.8 411 77.9
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 5.8e-183 644.4 411 77.9
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 5.8e-183 644.4 411 77.4
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 9.9e-183 643.7 409 76.0
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 2.2e-182 642.5 412 77.4
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 3.8e-182 641.7 411 77.1
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 6.4e-182 641.0 413 77.7
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 8.4e-182 640.6 413 77.7
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 8.4e-182 640.6 412 78.4
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.1e-181 640.2 413 76.8
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 1.9e-181 639.4 409 77.5
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 7.1e-181 637.5 411 77.4
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 7.1e-181 637.5 411 76.9
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 1.2e-180 636.7 412 77.4
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 4.6e-180 634.8 412 75.5
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 7.9e-180 634.0 412 75.7
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 3.0e-179 632.1 409 76.8
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 3.9e-179 631.7 409 76.8
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 6.7e-179 630.9 409 76.5
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 8.7e-179 630.6 444 73.6
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 3.7e-177 625.2 409 75.8
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 3.7e-177 625.2 409 76.0
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 8.1e-177 624.0 409 76.0
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 8.1e-177 624.0 411 75.4
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.1e-176 623.6 411 75.2
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 1.4e-176 623.2 413 75.1
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 4.0e-176 621.7 409 74.1
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 9.0e-176 620.5 411 74.9
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 2.0e-175 619.4 417 72.9
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.6e-175 619.0 409 75.6
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 4.5e-175 618.2 410 74.4
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 5.8e-175 617.8 413 72.9
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 1.0e-174 617.1 412 75.2
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 1.7e-174 616.3 409 75.3
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.2e-174 615.9 409 75.6
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 2.9e-174 615.5 412 73.3
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 3.8e-174 615.1 413 72.6
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.1e-173 613.6 412 72.6
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.4e-173 613.2 413 73.4
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.4e-173 613.2 412 72.3
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 2.5e-173 612.5 412 72.3
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 5.5e-173 611.3 412 72.3
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 9.3e-173 610.5 413 72.9
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 9.3e-173 610.5 478 66.1
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 1.2e-172 610.1 418 72.7
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.6e-172 609.8 412 72.3
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 1.6e-172 609.8 412 71.8
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 1.8e-171 606.3 456 68.4
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.3e-171 605.9 412 71.6
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 3.0e-171 605.5 412 71.1
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 3.9e-171 605.1 411 72.3
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 5.1e-171 604.7 412 71.1
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 5.1e-171 604.7 412 71.1
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 5.1e-171 604.7 412 71.1
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 1.5e-170 603.2 411 71.5
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 1.5e-170 603.2 412 70.9
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 4.3e-170 601.7 412 70.6
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 2.1e-169 599.4 405 74.6
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 2.1e-169 599.4 420 72.1
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 8.2e-169 597.4 412 70.9
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 8.2e-169 597.4 403 74.7
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 1.8e-168 596.3 418 72.5
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 7.6e-167 590.9 411 72.0
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 1.0e-166 590.5 507 62.3
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 3.8e-166 588.6 411 71.3
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 8.4e-166 587.4 411 71.0
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 1.9e-165 586.3 412 70.1
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 6.1e-164 581.3 467 64.7
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 8.5e-158 560.8 414 67.9
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 6.3e-153 544.7 428 64.3
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 7.7e-151 537.7 348 76.7
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 9.4e-149 530.8 409 65.8
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.7e-142 510.0 304 82.6
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 3.2e-141 505.8 409 61.9
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 6.1e-140 501.5 329 74.2
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 2.6e-138 496.1 333 73.6
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 1.7e-137 493.4 409 59.9
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.2e-132 477.2 410 59.0
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 4.7e-132 475.3 348 70.1
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 2.3e-131 473.0 417 60.0
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 3.7e-129 465.7 416 59.4
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 7.0e-128 461.5 335 69.3
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 9.4e-125 451.1 416 57.2
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.7e-105 386.0 237 78.9
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 7.8e-103 378.3 241 75.1
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 3.9e-86 322.8 433 45.0
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 4.0e-75 286.2 179 77.7
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 7.1e-72 275.4 387 41.6
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 1.2e-71 274.6 237 60.8
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 4.8e-60 236.1 329 41.9
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 6.0e-55 219.2 188 63.8
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 1.0e-49 201.8 113 87.6
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 8.5e-49 198.7 254 49.6
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 2.1e-39 167.5 125 64.8
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 5.3e-35 152.9 219 41.6
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 1.8e-30 137.9 86 77.9
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 4.8e-28 129.8 80 77.5
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 1.8e-27 127.9 84 70.2
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 9.4e-24 115.5 183 43.2
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 8.0e-23 112.5 102 58.8
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 8.0e-23 112.5 102 58.8
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.8e-22 111.3 88 62.5
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 8.8e-22 109.0 84 64.3
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 7.5e-21 105.9 91 61.5
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 1.1e-19 102.1 73 65.8
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 9.1e-19 99.0 74 59.5
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 9.1e-19 99.0 74 59.5
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 5.9e-18 96.3 74 58.1
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 5.5e-16 89.7 81 58.0
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 1.4e-14 85.1 59 67.8
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 3.0e-14 84.0 66 56.1
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 5.4e-11 73.2 113 41.6
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 7.0e-11 72.8 113 40.7
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 9.1e-11 72.4 67 53.7
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 3.5e-10 70.5 84 50.0


User provided reference genes

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