Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 2.7e-186 655.2 341 100.0
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 2.2e-111 406.4 340 68.8
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 6.9e-97 358.2 368 61.4
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 1.1e-89 334.3 364 59.3
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 7.2e-86 321.6 364 58.5
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 9.3e-86 321.2 363 57.3
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 6.7e-84 315.1 358 57.0
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 2.2e-66 256.9 343 51.6
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 5.2e-60 235.7 420 41.7
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 8.8e-60 235.0 372 45.7
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 8.2e-58 228.4 354 48.0
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 3.2e-54 216.5 370 45.4
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 7.2e-54 215.3 350 45.1
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 1.5e-51 207.6 365 44.4
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 1.1e-49 201.4 415 40.2
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 2.4e-49 200.3 345 45.2
MD08G1199700 Malus domestica HOM05D006001 ORTHO05D006714 6.5e-47 192.2 372 39.0
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 8.5e-47 191.8 383 40.7
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.9e-46 190.7 348 42.2
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.4e-44 184.5 365 41.4
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 6.8e-44 182.2 370 41.4
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 8.8e-44 181.8 343 41.7
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 2.0e-43 180.6 352 41.8
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 1.1e-41 174.9 343 38.2
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 1.4e-41 174.5 351 42.5
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.4e-41 174.5 349 40.1
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.4e-41 174.5 356 41.9
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 4.5e-40 169.5 350 38.3
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 7.8e-40 168.7 348 37.9
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 1.3e-39 167.9 385 37.7
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 2.9e-39 166.8 423 35.0
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 6.6e-39 165.6 334 42.8
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 1.1e-38 164.9 370 41.9
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.9e-38 164.1 346 41.3
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 4.3e-38 162.9 391 34.0
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 3.0e-36 156.8 355 35.8
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 5.2e-36 156.0 386 36.3
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 6.8e-36 155.6 366 39.1
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 8.9e-36 155.2 365 40.5
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.2e-35 154.8 382 35.9
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 3.4e-35 153.3 376 34.8
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 4.4e-35 152.9 350 38.3
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 5.7e-35 152.5 350 38.0
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 1.3e-34 151.4 396 35.1
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 2.2e-34 150.6 370 34.6
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 8.3e-34 148.7 371 38.5
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 2.4e-33 147.1 361 35.2
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 9.2e-33 145.2 376 34.3
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 1.2e-32 144.8 384 35.2
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 4.6e-32 142.9 346 37.9
FAN08G3160 Fragaria x ananassa HOM05D006001 ORTHO05D006714 1.1e-30 138.3 434 33.6
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.1e-30 138.3 225 42.2
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 9.5e-30 135.2 347 37.8
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 1.2e-29 134.8 383 35.8
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 2.8e-29 133.7 361 36.8
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 6.2e-29 132.5 363 35.5
FAN13G1830 Fragaria x ananassa HOM05D006001 ORTHO05D006714 8.0e-29 132.1 435 33.8
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.8e-28 131.0 281 39.5
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 1.8e-28 131.0 410 32.7
FAN18G3411 Fragaria x ananassa HOM05D006001 ORTHO05D006714 4.0e-28 129.8 440 31.1
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 6.8e-28 129.0 363 33.9
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 1.5e-27 127.9 365 35.6
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 2.0e-27 127.5 434 32.5
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 1.3e-26 124.8 367 34.3
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 2.9e-26 123.6 420 33.6
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 6.4e-26 122.5 348 33.3
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 1.9e-25 120.9 366 36.1
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 5.4e-25 119.4 359 33.4
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 1.6e-24 117.9 363 33.9
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.7e-23 114.4 385 34.8
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 3.0e-23 113.6 358 33.8
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 5.0e-23 112.8 360 34.2
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 5.0e-23 112.8 261 40.6
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 6.6e-23 112.5 344 34.9
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 8.6e-23 112.1 353 34.0
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 8.6e-23 112.1 420 33.6
FvH4_5g34870 Fragaria vesca HOM05D006001 ORTHO05D006714 1.9e-22 110.9 436 28.7
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 1.9e-22 110.9 393 32.6
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.9e-22 110.9 345 33.0
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 3.3e-22 110.2 411 33.3
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 4.3e-22 109.8 359 33.1
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 4.3e-22 109.8 356 32.9
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 5.6e-22 109.4 352 33.5
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 5.6e-22 109.4 303 34.0
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 5.6e-22 109.4 344 32.3
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 9.5e-22 108.6 340 34.4
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 9.5e-22 108.6 342 33.3
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.2e-21 108.2 345 32.8
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 3.1e-20 103.6 348 35.1
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 3.1e-20 103.6 366 32.2
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 3.1e-20 103.6 336 35.1
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 3.1e-20 103.6 343 32.9
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 5.2e-20 102.8 358 32.4
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 8.9e-20 102.1 367 33.5
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 1.2e-19 101.7 382 34.0
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 4.4e-19 99.8 347 32.6
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 4.4e-19 99.8 364 33.8
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 5.8e-19 99.4 419 30.1
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 2.9e-18 97.1 443 30.5
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 3.7e-18 96.7 347 33.4
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 3.2e-17 93.6 240 36.2
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 5.4e-17 92.8 370 29.7
THA.LOC104799788 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 7.8e-16 89.0 323 30.3
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 1.1e-14 85.1 382 31.4
AUR62019098 Chenopodium quinoa HOM05D034668 ORTHO05D006714 1.5e-14 84.7 302 30.1
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 2.5e-14 84.0 342 29.5
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 2.5e-14 84.0 352 32.7
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 4.3e-14 83.2 141 40.4
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 1.6e-13 81.3 380 30.8
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 3.6e-13 80.1 370 30.8
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 8.1e-13 79.0 223 35.4
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 2.3e-12 77.4 350 33.1
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 3.1e-12 77.0 74 59.5
SHI11237 Sapria himalayana HOM05D006001 ORTHO05D006714 5.8e-11 72.8 175 34.9
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 3.8e-10 70.1 147 39.5
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 4.9e-10 69.7 178 35.4
AUR62014355 Chenopodium quinoa HOM05D034668 ORTHO05D006714 6.4e-10 69.3 269 34.9
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 8.4e-10 68.9 178 35.4
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 5.4e-09 66.2 98 44.9
Dinv44865 Davidia involucrata HOM05D006001 ORTHO05D006714 9.2e-09 65.5 277 31.0
Peaxi162Scf00454g00211 Petunia axillaris HOM05D006001 ORTHO05D006714 9.2e-09 65.5 345 29.9
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 1.6e-08 64.7 195 33.8
HanXRQChr13g0425001 Helianthus annuus HOM05D006001 ORTHO05D006714 8.6e-07 58.9 76 46.1
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 2.5e-06 57.4 233 32.6
HanXRQChr13g0425801 Helianthus annuus HOM05D006001 ORTHO05D006714 3.3e-06 57.0 77 42.9


User provided reference genes

Program Settings