Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p013627 Quercus lobata HOM05D001817 ORTHO05D001647 1.6e-32 142.1 71 100.0
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 2.5e-25 118.2 122 58.2
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 2.5e-25 118.2 122 58.2
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 6.2e-24 113.6 123 57.7
Haze_21486 Corylus avellana HOM05D001817 ORTHO05D001647 5.2e-15 84.0 54 77.8
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 9.9e-14 79.7 52 71.2
Duzib052G0237 Durio zibethinus HOM05D001817 ORTHO05D001647 1.3e-13 79.3 52 69.2
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 2.9e-13 78.2 52 69.2
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 2.9e-13 78.2 52 67.3
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 3.7e-13 77.8 52 67.3
Atru.chr6.250 Acer truncatum HOM05D001817 ORTHO05D001647 1.1e-12 76.3 52 67.3
Prupe.1G484000 Prunus persica HOM05D001817 ORTHO05D001647 3.2e-12 74.7 52 59.6
CiPaw.08G009300 Carya illinoinensis HOM05D001817 ORTHO05D001647 4.1e-12 74.3 52 65.4
RcHm_v2.0_Chr6g0297461 Rosa chinensis HOM05D001817 ORTHO05D001647 2.1e-11 72.0 52 63.5
Cpa.g.sc187.6 Carica papaya HOM05D001817 ORTHO05D001647 4.6e-11 70.9 51 62.7
FvH4_2g28690 Fragaria vesca HOM05D001817 ORTHO05D001647 6.0e-11 70.5 52 61.5
Ciclev10009917m.g Citrus clementina HOM05D001817 ORTHO05D001647 1.0e-10 69.7 53 60.4
Prupe.1G484100 Prunus persica HOM05D001817 ORTHO05D001647 1.0e-10 69.7 49 63.3
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 1.3e-10 69.3 53 60.4
MD08G1079500 Malus domestica HOM05D001817 ORTHO05D001647 3.0e-10 68.2 51 58.8
Atru.chr12.564 Acer truncatum HOM05D001817 ORTHO05D001647 1.1e-09 66.2 52 61.5
Lj6g0012802 Lotus japonicus HOM05D001817 ORTHO05D001647 1.9e-09 65.5 67 46.3
CsaV3_3G046190 Cucumis sativus L. HOM05D001817 ORTHO05D001647 3.3e-09 64.7 67 50.7
RcHm_v2.0_Chr6g0297491 Rosa chinensis HOM05D001817 ORTHO05D001647 3.3e-09 64.7 52 55.8
MD08G1151500 Malus domestica HOM05D001817 ORTHO05D001647 4.3e-09 64.3 49 61.2
ClCG05G016690 Citrullus lanatus HOM05D001817 ORTHO05D001647 5.6e-09 63.9 67 50.7
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 5.6e-09 63.9 60 55.0
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 5.6e-09 63.9 60 55.0
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 5.6e-09 63.9 60 55.0
VMungo0540G2413 Vigna mungo HOM05D001817 ORTHO05D001647 5.6e-09 63.9 50 56.0
Lsat_1_v5_gn_6_115781 Lactuca sativa HOM05D001817 ORTHO05D001647 7.3e-09 63.5 51 52.9
Phvul.006G043500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.2e-08 62.8 52 51.9
FvH4_2g27480 Fragaria vesca HOM05D001817 ORTHO05D001647 1.6e-08 62.4 52 59.6
FAN15G2483 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.6e-08 62.4 52 59.6
FAN24G1722 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.6e-08 62.4 52 59.6
TWI63G0410 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 1.6e-08 62.4 46 56.5
MELO3C033004.2 Cucumis melo HOM05D001817 ORTHO05D001647 2.1e-08 62.0 49 57.1
Lj6g0014356 Lotus japonicus HOM05D001817 ORTHO05D001647 2.1e-08 62.0 67 43.3
Sed0018471 Sechium edule HOM05D001817 ORTHO05D001647 4.7e-08 60.8 49 53.1
Sed0025130 Sechium edule HOM05D001817 ORTHO05D001647 4.7e-08 60.8 49 57.1
TWI34G0730 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 4.7e-08 60.8 52 53.8
ECA246G0220 Erigeron canadensis HOM05D001817 ORTHO05D001647 6.2e-08 60.5 51 51.0
Lj6g0004190 Lotus japonicus HOM05D001817 ORTHO05D001647 6.2e-08 60.5 67 43.3
Glyma.20G204300 Glycine max HOM05D001817 ORTHO05D001647 8.1e-08 60.1 51 49.0
MD15G1128800 Malus domestica HOM05D001817 ORTHO05D001647 8.1e-08 60.1 51 52.9
QL07p000821 Quercus lobata HOM05D001817 ORTHO05D001647 8.1e-08 60.1 53 54.7
CsaV3_6G045660 Cucumis sativus L. HOM05D001817 ORTHO05D001647 1.1e-07 59.7 49 55.1
FAN27G3307 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.1e-07 59.7 52 59.6
FvH4_5g25410 Fragaria vesca HOM05D001817 ORTHO05D001647 1.4e-07 59.3 52 50.0
FAN18G2855 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.4e-07 59.3 52 50.0
Glyma.10G186200 Glycine max HOM05D001817 ORTHO05D001647 1.8e-07 58.9 51 47.1
FAN20G0384 Fragaria x ananassa HOM05D000140 ORTHO05D000087 2.4e-07 58.5 52 57.7
Sed0003760 Sechium edule HOM05D001817 ORTHO05D001647 2.4e-07 58.5 49 55.1
Sc06g0000520 Simmondsia chinensis HOM05D001817 ORTHO05D001647 2.4e-07 58.5 66 43.9
HanXRQChr16g0511881 Helianthus annuus HOM05D001817 ORTHO05D001647 3.1e-07 58.2 51 51.0
Lj4g0011737 Lotus japonicus HOM05D001817 ORTHO05D001647 3.1e-07 58.2 52 53.8
Lj4g0014854 Lotus japonicus HOM05D001817 ORTHO05D001647 3.1e-07 58.2 49 46.9
CDE05G1510 Ceratophyllum demersum HOM05D000485 ORTHO05D000341 4.0e-07 57.8 51 49.0
Sed0010450 Sechium edule HOM05D001817 ORTHO05D001647 4.0e-07 57.8 68 44.1
TPR.G9069 Trifolium pratense HOM05D001817 ORTHO05D001647 5.2e-07 57.4 48 52.1
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 6.8e-07 57.0 49 53.1
VMungo0720G1259 Vigna mungo HOM05D001817 ORTHO05D001647 6.8e-07 57.0 51 45.1
arahy.Tifrunner.gnm1.ann1.H9XFHY Arachis hypogaea HOM05D001817 ORTHO05D001647 8.9e-07 56.6 52 50.0
Lsat_1_v5_gn_6_115761 Lactuca sativa HOM05D001817 ORTHO05D001647 8.9e-07 56.6 52 48.1
HanXRQChr03g0079111 Helianthus annuus HOM05D001817 ORTHO05D001647 1.2e-06 56.2 51 47.1
FAN24G1684 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.5e-06 55.8 45 57.8
FAN24G2789 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.5e-06 55.8 52 48.1
HanXRQChr13g0400031 Helianthus annuus HOM05D001817 ORTHO05D001647 2.0e-06 55.5 52 51.9
Lj4g0027202 Lotus japonicus HOM05D001817 ORTHO05D001647 2.0e-06 55.5 52 51.9
CDE05G3187 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 2.6e-06 55.1 51 49.0
ClCG05G016680 Citrullus lanatus HOM05D001817 ORTHO05D001647 3.4e-06 54.7 51 52.9
Glyma.10G271300 Glycine max HOM05D001817 ORTHO05D001647 3.4e-06 54.7 51 51.0
Thhalv10027554m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 4.4e-06 54.3 60 53.3
FvH4_2g28712 Fragaria vesca HOM05D001817 ORTHO05D001647 5.8e-06 53.9 52 50.0
FAN27G2147 Fragaria x ananassa HOM05D001817 ORTHO05D001647 5.8e-06 53.9 52 46.2
Lsat_1_v5_gn_6_115820 Lactuca sativa HOM05D001817 ORTHO05D001647 5.8e-06 53.9 49 46.9
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 7.6e-06 53.5 52 50.0
Sc03g0006280 Simmondsia chinensis HOM05D001817 ORTHO05D001647 7.6e-06 53.5 48 47.9
Dinv24980 Davidia involucrata HOM05D001817 ORTHO05D001647 9.9e-06 53.1 69 42.0
FvH4_5g03660 Fragaria vesca HOM05D001817 ORTHO05D001647 9.9e-06 53.1 47 46.8
Lalb_Chr21g0316211 Lupinus albus HOM05D001817 ORTHO05D001647 9.9e-06 53.1 49 46.9
Sabra09G0098900 Salix brachista HOM05D001817 ORTHO05D001647 9.9e-06 53.1 50 48.0
Sed0003642 Sechium edule HOM05D001817 ORTHO05D001647 9.9e-06 53.1 50 50.0


User provided reference genes

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