Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p011684 Quercus lobata HOM05D005983 ORTHO05D007438 1.4e-273 945.7 466 100.0
CiPaw.11G080800 Carya illinoinensis HOM05D005983 ORTHO05D007438 1.3e-210 736.5 466 79.8
Prupe.5G066800 Prunus persica HOM05D005983 ORTHO05D007438 4.5e-200 701.4 465 75.5
MD06G1055900 Malus domestica HOM05D005983 ORTHO05D007438 1.0e-196 690.3 465 74.6
CANSAT21G0098 Cannabis sativa HOM05D005983 ORTHO05D007438 3.7e-194 681.8 468 73.5
FAN08G1502 Fragaria x ananassa HOM05D005983 ORTHO05D007438 3.2e-193 678.7 467 73.4
FAN04G1995 Fragaria x ananassa HOM05D005983 ORTHO05D007438 1.2e-192 676.8 464 73.9
RcHm_v2.0_Chr7g0203641 Rosa chinensis HOM05D005983 ORTHO05D007438 1.6e-192 676.4 467 73.7
FvH4_5g19150 Fragaria vesca HOM05D005983 ORTHO05D007438 1.3e-191 673.3 467 72.8
FAN18G0274 Fragaria x ananassa HOM05D005983 ORTHO05D007438 1.3e-191 673.3 467 72.8
arahy.Tifrunner.gnm1.ann1.NE97L5 Arachis hypogaea HOM05D005983 ORTHO05D007438 5.6e-190 667.9 466 72.5
Duzib084G0278 Durio zibethinus HOM05D005983 ORTHO05D007438 1.6e-189 666.4 467 72.8
Lalb_Chr05g0214371 Lupinus albus HOM05D005983 ORTHO05D007438 2.8e-189 665.6 464 71.6
Ciclev10020120m.g Citrus clementina HOM05D005983 ORTHO05D007438 1.0e-188 663.7 465 71.6
Potri.003G078300 Populus trichocarpa HOM05D005983 ORTHO05D007438 5.2e-188 661.4 467 71.5
Thecc.03G249100 Theobroma cacao HOM05D005983 ORTHO05D007438 8.9e-188 660.6 467 72.2
CSS0015193 Camellia sinensis var. sinensis HOM05D005983 ORTHO05D007438 3.4e-187 658.7 467 71.7
Lj2g0002324 Lotus japonicus HOM05D005983 ORTHO05D007438 2.9e-186 655.6 464 71.6
COL.COLO4_37146 Corchorus olitorius HOM05D005983 ORTHO05D007438 1.4e-185 653.3 445 73.5
Hma1.2p1_0316F.1_g122960 Hydrangea macrophylla HOM05D005983 ORTHO05D007438 1.9e-185 652.9 469 71.2
Glyma.01G207800 Glycine max HOM05D005983 ORTHO05D007438 4.1e-185 651.7 465 71.8
Sabra03G0048600 Salix brachista HOM05D005983 ORTHO05D007438 7.0e-185 651.0 473 70.4
VMungo1215G0088 Vigna mungo HOM05D005983 ORTHO05D007438 9.2e-185 650.6 464 70.7
Eucgr.E00410 Eucalyptus grandis HOM05D005983 ORTHO05D007438 2.0e-184 649.4 466 70.8
Gorai.003G172200 Gossypium raimondii HOM05D005983 ORTHO05D007438 3.5e-184 648.7 469 70.8
TWI15G0813 Tripterygium wilfordii HOM05D005983 ORTHO05D007438 5.0e-183 644.8 466 70.8
Phvul.002G057200 Phaseolus vulgaris HOM05D005983 ORTHO05D007438 8.6e-183 644.0 464 70.0
GSVIVG01004724001 Vitis vinifera HOM05D005983 ORTHO05D007438 3.3e-182 642.1 467 70.2
Ca_24588_v3 Cicer arietinum L. HOM05D005983 ORTHO05D007438 7.3e-182 641.0 465 71.8
Gohir.A03G007500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 1.2e-181 640.2 469 70.1
Gohir.D03G163500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 1.6e-181 639.8 449 72.4
Psat2g176840 Pisum sativum HOM05D005983 ORTHO05D007438 2.8e-181 639.0 466 71.2
MELO3C005523.2 Cucumis melo HOM05D005983 ORTHO05D007438 4.7e-181 638.3 467 69.8
Dinv21647 Davidia involucrata HOM05D005983 ORTHO05D007438 2.3e-180 636.0 468 70.7
Medtr5g012880 Medicago truncatula HOM05D005983 ORTHO05D007438 3.1e-180 635.6 466 70.0
Sed0018188 Sechium edule HOM05D005983 ORTHO05D007438 4.9e-178 628.2 464 68.8
PGR042G2168 Punica granatum HOM05D005983 ORTHO05D007438 6.4e-178 627.9 468 69.2
TPR.G18111 Trifolium pratense HOM05D005983 ORTHO05D007438 4.1e-177 625.2 468 69.0
Sed0010070 Sechium edule HOM05D005983 ORTHO05D007438 5.4e-177 624.8 466 68.5
Solyc06g060780.4 Solanum lycopersicum HOM05D005983 ORTHO05D007438 2.1e-176 622.9 469 67.8
Sopen06g020900 Solanum pennellii HOM05D005983 ORTHO05D007438 1.7e-175 619.8 469 67.4
PGSC0003DMG402011882 Solanum tuberosum HOM05D005983 ORTHO05D007438 1.7e-175 619.8 469 67.4
Cc08_g12250 Coffea canephora HOM05D005983 ORTHO05D007438 3.9e-175 618.6 472 67.8
Migut.A01119 Erythranthe guttata HOM05D005983 ORTHO05D007438 5.1e-175 618.2 474 68.1
Nn1g00952 Nelumbo nucifera HOM05D005983 ORTHO05D007438 8.6e-175 617.5 466 68.7
SalBow6G6019 Salvia bowleyana HOM05D005983 ORTHO05D007438 1.5e-174 616.7 449 69.5
MBI04_g09520_MAGBIO Magnolia biondii HOM05D005983 ORTHO05D007438 1.9e-174 616.3 467 66.4
DCAR_004965 Daucus carota HOM05D005983 ORTHO05D007438 4.7e-173 611.7 470 67.9
Nitab4.5_0000618g0100 Nicotiana tabacum HOM05D005983 ORTHO05D007438 8.9e-172 607.4 470 66.4
Manes.01G082200 Manihot esculenta HOM05D005983 ORTHO05D007438 1.4e-169 600.1 399 75.2
Peaxi162Scf01022g00324 Petunia axillaris HOM05D005983 ORTHO05D007438 3.2e-169 599.0 466 66.5
CAN.G62.33 Capsicum annuum HOM05D005983 ORTHO05D007438 1.6e-168 596.7 469 65.5
Aqoxy5G03845 Aquilegia oxysepala HOM05D005983 ORTHO05D007438 1.0e-167 594.0 468 66.0
arahy.Tifrunner.gnm1.ann1.0NSC2B Arachis hypogaea HOM05D005983 ORTHO05D007438 6.6e-167 591.3 418 71.3
HanXRQChr16g0510961 Helianthus annuus HOM05D005983 ORTHO05D007438 8.6e-167 590.9 471 65.2
Rhsim01G0100800 Rhododendron simsii HOM05D005983 ORTHO05D007438 1.9e-166 589.7 568 57.2
Sp7g15340 Schrenkiella parvula HOM05D005983 ORTHO05D007438 3.3e-166 589.0 465 64.3
CARHR223230 Cardamine hirsuta HOM05D005983 ORTHO05D007438 7.3e-166 587.8 470 63.6
BcaNung00159 Brassica carinata HOM05D005983 ORTHO05D007438 1.2e-165 587.0 457 63.9
CsaV3_5G004310 Cucumis sativus L. HOM05D005983 ORTHO05D007438 1.2e-165 587.0 396 73.5
AT4G16700 Arabidopsis thaliana HOM05D005983 ORTHO05D007438 2.1e-165 586.3 469 63.5
AL7G38030 Arabidopsis lyrata HOM05D005983 ORTHO05D007438 2.4e-164 582.8 478 62.3
BcaC09g50403 Brassica carinata HOM05D005983 ORTHO05D007438 2.4e-164 582.8 464 63.4
C01p25880 Brassica napus HOM05D005983 ORTHO05D007438 2.4e-164 582.8 464 63.4
BolC1t02533H Brassica oleracea HOM05D005983 ORTHO05D007438 2.4e-164 582.8 464 63.4
ClCG01G004150 Citrullus lanatus HOM05D005983 ORTHO05D007438 5.2e-164 581.6 466 64.6
Duzib205G1394 Durio zibethinus HOM05D005983 ORTHO05D007438 6.8e-164 581.3 467 65.3
Aa31LG2G12890 Aethionema arabicum HOM05D005983 ORTHO05D007438 2.0e-163 579.7 449 63.9
A01p20580 Brassica napus HOM05D005983 ORTHO05D007438 5.8e-163 578.2 464 62.7
BraA01t01986Z Brassica rapa HOM05D005983 ORTHO05D007438 5.8e-163 578.2 464 62.9
Carub.0007s2469 Capsella rubella HOM05D005983 ORTHO05D007438 6.4e-162 574.7 466 63.7
EL10Ac5g12377 Beta vulgaris HOM05D005983 ORTHO05D007438 1.4e-161 573.5 515 57.7
ECA233G1798 Erigeron canadensis HOM05D005983 ORTHO05D007438 1.0e-159 567.4 416 68.0
Sc01g0008340 Simmondsia chinensis HOM05D005983 ORTHO05D007438 1.7e-159 566.6 417 68.6
Atru.chr9.1290 Acer truncatum HOM05D005983 ORTHO05D007438 5.6e-158 561.6 403 71.7
Ah.12g054210 Amaranthus hybridus HOM05D005983 ORTHO05D007438 1.3e-157 560.5 469 61.8
Hund14571 Selenicereus undatus HOM05D005983 ORTHO05D007438 3.1e-156 555.8 434 65.4
ATR0317G025 Amborella trichopoda HOM05D005983 ORTHO05D007438 9.0e-156 554.3 494 60.1
PSO357G0330 Papaver somniferum HOM05D005983 ORTHO05D007438 3.4e-155 552.4 411 68.9
PSO170G1657 Papaver somniferum HOM05D005983 ORTHO05D007438 6.4e-154 548.1 411 68.4
SGA_v2.0_scaffold104G30169 Striga asiatica HOM05D005983 ORTHO05D007438 1.4e-153 547.0 573 53.6
AUR62019966 Chenopodium quinoa HOM05D005983 ORTHO05D007438 1.9e-153 546.6 472 60.0
AUR62007103 Chenopodium quinoa HOM05D005983 ORTHO05D007438 2.4e-153 546.2 472 59.5
unitig_744.g24471 Utricularia gibba HOM05D005983 ORTHO05D007438 2.5e-150 536.2 426 61.5
Cpa.g.sc29.178 Carica papaya HOM05D005983 ORTHO05D007438 4.3e-150 535.4 375 69.6
Lsat_1_v5_gn_6_18021 Lactuca sativa HOM05D005983 ORTHO05D007438 4.5e-147 525.4 449 63.0
Os03g0101900 Oryza sativa ssp. japonica HOM05D005983 ORTHO05D007438 1.4e-145 520.4 419 61.8
TAR713G0001 Trochodendron aralioides HOM05D005983 ORTHO05D007438 1.1e-140 504.2 374 70.3
Haze_01067 Corylus avellana HOM05D005983 ORTHO05D007438 6.9e-132 474.9 275 84.0
HPP92_015120 Vanilla planifolia HOM05D005983 ORTHO05D007438 3.8e-130 469.2 382 61.5
THA.LOC104815498 Tarenaya hassleriana HOM05D005983 ORTHO05D007438 5.7e-126 455.3 480 51.9
Mapoly0144s0014 Marchantia polymorpha HOM05D005983 ORTHO05D007438 9.1e-116 421.4 427 52.7
Pp3c10_660 Physcomitrium patens HOM05D005983 ORTHO05D007438 7.2e-113 411.8 413 51.8
Thhalv10025592m.g Eutrema salsugineum HOM05D005983 ORTHO05D007438 3.6e-112 409.5 333 63.7
SMO351G0559 Selaginella moellendorffii HOM05D005983 ORTHO05D007438 2.0e-102 377.1 410 48.5
vmacro00190 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 5.0e-98 362.5 403 52.4
CBR_g40206 Chara braunii HOM05D005983 ORTHO05D007438 5.2e-95 352.4 464 41.6
Lj2A220G37 Lonicera japonica HOM05D005983 ORTHO05D007438 3.6e-88 329.7 214 76.2
Actinidia02145 Actinidia chinensis HOM05D005983 ORTHO05D007438 5.2e-87 325.9 226 71.2
Actinidia14415 Actinidia chinensis HOM05D005983 ORTHO05D007438 2.6e-86 323.6 237 68.8
Nitab4.5_0001076g0010 Nicotiana tabacum HOM05D005983 ORTHO05D007438 5.7e-86 322.4 271 62.0
CDE04G1583 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 2.1e-80 303.9 257 59.9
Actinidia02144 Actinidia chinensis HOM05D005983 ORTHO05D007438 1.4e-76 291.2 204 70.6
Haze_01069 Corylus avellana HOM05D005983 ORTHO05D007438 1.9e-60 237.7 143 85.3
Actinidia14414 Actinidia chinensis HOM05D005983 ORTHO05D007438 4.1e-60 236.5 189 63.5
Lj2A220G36 Lonicera japonica HOM05D005983 ORTHO05D007438 4.1e-60 236.5 141 82.3
Glyma.11G034500 Glycine max HOM05D005983 ORTHO05D007438 1.4e-55 221.5 140 78.6
C09p44540 Brassica napus HOM05D005983 ORTHO05D007438 1.3e-50 204.9 273 46.5
BcaC02g09019 Brassica carinata HOM05D005983 ORTHO05D007438 3.9e-50 203.4 260 48.1
C04p39670 Brassica napus HOM05D005983 ORTHO05D007438 3.9e-50 203.4 260 48.1
BolC4t25537H Brassica oleracea HOM05D005983 ORTHO05D007438 3.9e-50 203.4 260 48.1
CDE04G0678 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 4.4e-46 189.9 168 60.1
vmacro00191 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 1.9e-44 184.5 130 72.3
Cfa023268 Carpinus fangiana HOM05D005983 ORTHO05D007438 6.6e-42 176.0 444 29.5
PRCOL_00002495 Prasinoderma coloniale HOM05D000251 ORTHO05D007438 1.1e-39 168.7 364 33.8
FAN13G0557 Fragaria x ananassa HOM05D005983 ORTHO05D007438 1.6e-32 144.8 95 76.8
SEGI_17682 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 1.1e-31 142.1 114 61.4
C02p21550 Brassica napus HOM05D005983 ORTHO05D007438 9.0e-31 139.0 255 34.5
BcaC03g14715 Brassica carinata HOM05D005983 ORTHO05D007438 3.8e-29 133.7 242 35.1
BolC2t08295H Brassica oleracea HOM05D005983 ORTHO05D007438 3.8e-29 133.7 242 35.1
BcaC07g42540 Brassica carinata HOM05D005983 ORTHO05D007438 4.0e-23 113.6 138 45.7
BraA08t34844Z Brassica rapa HOM05D005983 ORTHO05D007438 5.3e-23 113.2 188 37.2
SEGI_40726 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 3.4e-22 110.5 92 57.6
RcHm_v2.0_Chr7g0203671 Rosa chinensis HOM05D005983 ORTHO05D007438 3.8e-21 107.1 112 53.6
SEGI_40136 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 1.0e-18 99.0 99 52.5
Pp3s32_287 Physcomitrium patens HOM05D003620 ORTHO05D007438 1.1e-17 95.5 315 26.3
Ca_29382_v3 Cicer arietinum L. HOM05D003620 ORTHO05D007438 1.4e-15 88.6 281 28.8
Lsat_1_v5_gn_4_25380 Lactuca sativa HOM05D005983 ORTHO05D007438 5.1e-10 70.1 44 70.5
CAN.G523.97 Capsicum annuum HOM05D003620 ORTHO05D004261 3.7e-08 63.9 289 24.2
SHI02535 Sapria himalayana HOM05D005983 ORTHO05D007438 3.7e-08 63.9 53 60.4
MSTRG.16561 Avicennia marina HOM05D003620 ORTHO05D004261 4.8e-08 63.5 320 24.7
PRCOL_00006167 Prasinoderma coloniale HOM05D003620 ORTHO05D004261 8.2e-08 62.8 245 26.9
Solyc01g104880.3 Solanum lycopersicum HOM05D003620 ORTHO05D004261 1.4e-07 62.0 290 24.1
Sopen01g047400 Solanum pennellii HOM05D003620 ORTHO05D004261 1.4e-07 62.0 290 24.1
Cfa005564 Carpinus fangiana HOM05D003620 ORTHO05D004261 1.5e-06 58.5 320 23.8
Os01g0959800 Oryza sativa ssp. japonica HOM05D003620 ORTHO05D004261 1.5e-06 58.5 319 22.6


User provided reference genes

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