Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p052645 Quercus lobata HOM05D000626 ORTHO05D337461 2.6e-53 211.8 111 100.0
QL11p052647 Quercus lobata HOM05D000626 ORTHO05D000824 1.4e-14 83.2 57 75.4
Potri.004G179628 Populus trichocarpa HOM05D000626 ORTHO05D000824 1.3e-12 76.6 44 86.4
CiPaw.05G086600 Carya illinoinensis HOM05D000626 ORTHO05D000824 5.0e-12 74.7 43 83.7
Haze_02082 Corylus avellana HOM05D000626 ORTHO05D000824 5.0e-12 74.7 44 81.8
CiPaw.06G119100 Carya illinoinensis HOM05D000626 ORTHO05D000824 8.5e-12 73.9 57 66.7
Sabra09G0108100 Salix brachista HOM05D000626 ORTHO05D000824 8.5e-12 73.9 44 79.5
Hma1.2p1_0032F.1_g019060 Hydrangea macrophylla HOM05D000626 ORTHO05D000824 1.9e-11 72.8 57 63.2
Hma1.2p1_0032F.1_g019070 Hydrangea macrophylla HOM05D000626 ORTHO05D000824 1.9e-11 72.8 57 63.2
Manes.11G098400 Manihot esculenta HOM05D000626 ORTHO05D000824 1.9e-11 72.8 44 77.3
Cfa005310 Carpinus fangiana HOM05D002887 ORTHO05D003159 2.5e-11 72.4 44 79.5
COL.COLO4_18010 Corchorus olitorius HOM05D000626 ORTHO05D000824 2.5e-11 72.4 55 63.6
Potri.009G139600 Populus trichocarpa HOM05D000626 ORTHO05D000824 2.5e-11 72.4 44 77.3
Sabra04G0120900 Salix brachista HOM05D002887 ORTHO05D003159 2.5e-11 72.4 44 81.8
Actinidia20540 Actinidia chinensis HOM05D000626 ORTHO05D000824 3.2e-11 72.0 42 83.3
arahy.Tifrunner.gnm1.ann1.DA3C26 Arachis hypogaea HOM05D000626 ORTHO05D000824 5.5e-11 71.2 44 79.5
arahy.Tifrunner.gnm1.ann1.XMC2AU Arachis hypogaea HOM05D000626 ORTHO05D000824 5.5e-11 71.2 44 79.5
CSS0025494 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D000824 5.5e-11 71.2 44 77.3
TWI75G0228 Tripterygium wilfordii HOM05D000626 ORTHO05D000824 5.5e-11 71.2 44 72.7
ClCG02G003810 Citrullus lanatus HOM05D000626 ORTHO05D000824 7.2e-11 70.9 44 77.3
Dinv41905 Davidia involucrata HOM05D000626 ORTHO05D000824 7.2e-11 70.9 44 75.0
Prupe.8G170800 Prunus persica HOM05D000626 ORTHO05D000824 7.2e-11 70.9 44 75.0
CANSAT25G0621 Cannabis sativa HOM05D000626 ORTHO05D000824 9.4e-11 70.5 57 61.4
Sed0010851 Sechium edule HOM05D000626 ORTHO05D000824 9.4e-11 70.5 45 75.6
Hund00007 Selenicereus undatus HOM05D000626 ORTHO05D000824 9.4e-11 70.5 57 63.2
Atru.chr5.3467 Acer truncatum HOM05D000626 ORTHO05D000824 1.2e-10 70.1 44 75.0
Gohir.D01G162400 Gossypium hirsutum HOM05D000626 ORTHO05D000824 1.2e-10 70.1 55 60.0
Gorai.002G201300 Gossypium raimondii HOM05D000626 ORTHO05D000824 1.2e-10 70.1 55 60.0
Hma1.2p1_0163F.1_g072840 Hydrangea macrophylla HOM05D000626 ORTHO05D000824 1.2e-10 70.1 44 75.0
Lj9A402G70 Lonicera japonica HOM05D000626 ORTHO05D000824 1.2e-10 70.1 57 61.4
PGR042G1234 Punica granatum HOM05D000626 ORTHO05D000824 1.2e-10 70.1 43 79.1
CAN.G824.39 Capsicum annuum HOM05D000626 ORTHO05D000824 1.6e-10 69.7 44 72.7
FAN20G2192 Fragaria x ananassa HOM05D000626 ORTHO05D000824 1.6e-10 69.7 57 61.4
Ca_11577_v3 Cicer arietinum L. HOM05D000626 ORTHO05D000824 2.1e-10 69.3 44 75.0
FvH4_2g15810 Fragaria vesca HOM05D000626 ORTHO05D000824 2.1e-10 69.3 57 59.6
FAN24G3093 Fragaria x ananassa HOM05D002781 ORTHO05D003382 2.1e-10 69.3 57 59.6
CSS0012597 Camellia sinensis var. sinensis HOM05D000626 ORTHO05D000824 2.7e-10 68.9 42 81.0
FAN15G3330 Fragaria x ananassa HOM05D000626 ORTHO05D000824 2.7e-10 68.9 57 61.4
RcHm_v2.0_Chr6g0279181 Rosa chinensis HOM05D000626 ORTHO05D000824 2.7e-10 68.9 57 59.6
Dinv14140 Davidia involucrata HOM05D000626 ORTHO05D000824 3.6e-10 68.6 45 71.1
Duzib132G0893 Durio zibethinus HOM05D000626 ORTHO05D000824 3.6e-10 68.6 44 70.5
Sc14g0002350 Simmondsia chinensis HOM05D000626 ORTHO05D000824 3.6e-10 68.6 54 59.3
TPR.G5105 Trifolium pratense HOM05D000626 ORTHO05D000824 4.6e-10 68.2 44 70.5
CsaV3_7G001340 Cucumis sativus L. HOM05D000626 ORTHO05D000824 6.1e-10 67.8 44 72.7
Eucgr.G01806 Eucalyptus grandis HOM05D000626 ORTHO05D000824 6.1e-10 67.8 44 70.5
Lj5A175G91 Lonicera japonica HOM05D000626 ORTHO05D000824 7.9e-10 67.4 44 75.0
DCAR_022830 Daucus carota HOM05D000626 ORTHO05D000824 1.0e-09 67.0 44 72.7
Duzib248G0246 Durio zibethinus HOM05D000626 ORTHO05D000824 1.0e-09 67.0 55 61.8
FAN27G2843 Fragaria x ananassa HOM05D000626 ORTHO05D000824 1.0e-09 67.0 57 68.4
Gohir.A01G171400 Gossypium hirsutum HOM05D000626 ORTHO05D000824 1.0e-09 67.0 43 67.4
MD05G1127100 Malus domestica HOM05D000626 ORTHO05D000824 1.0e-09 67.0 44 68.2
Psat7g084240 Pisum sativum HOM05D000626 ORTHO05D000824 1.4e-09 66.6 44 70.5
Sed0003608 Sechium edule HOM05D000626 ORTHO05D000824 1.4e-09 66.6 57 56.1
Lalb_Chr07g0187861 Lupinus albus HOM05D000626 ORTHO05D000824 1.8e-09 66.2 44 70.5
vmacro02300 Vaccinium macrocarpon HOM05D000626 ORTHO05D000824 1.8e-09 66.2 41 78.0
Ciclev10030419m.g Citrus clementina HOM05D000626 ORTHO05D000824 2.3e-09 65.9 44 70.5
Thecc.02G053000 Theobroma cacao HOM05D000626 ORTHO05D000824 2.3e-09 65.9 44 70.5
MSTRG.27627 Avicennia marina HOM05D000626 ORTHO05D000824 3.0e-09 65.5 54 61.1
Lsat_1_v5_gn_7_48281 Lactuca sativa HOM05D000626 ORTHO05D000824 3.0e-09 65.5 43 69.8
Glyma.08G093400 Glycine max HOM05D000626 ORTHO05D000824 3.9e-09 65.1 44 70.5
Rhsim11G0194700 Rhododendron simsii HOM05D000626 ORTHO05D000824 3.9e-09 65.1 41 75.6
Solyc09g008920.3 Solanum lycopersicum HOM05D000626 ORTHO05D000824 3.9e-09 65.1 44 65.9
Oeu045086.1 Olea europaea HOM05D000626 ORTHO05D000824 5.1e-09 64.7 44 70.5
Nitab4.5_0011545g0020 Nicotiana tabacum HOM05D000626 ORTHO05D000824 6.7e-09 64.3 44 63.6
Aqoxy2G04027 Aquilegia oxysepala HOM05D000626 ORTHO05D000824 8.8e-09 63.9 55 56.4
Lj4g0010056 Lotus japonicus HOM05D000626 ORTHO05D000824 1.5e-08 63.2 44 70.5
SGA_v2.0_scaffold80G25832 Striga asiatica HOM05D000626 ORTHO05D000824 1.5e-08 63.2 44 70.5
MSTRG.19964 Avicennia marina HOM05D000626 ORTHO05D000824 1.9e-08 62.8 44 68.2
AUR62012985 Chenopodium quinoa HOM05D000626 ORTHO05D000824 1.9e-08 62.8 45 64.4
ECA234G3386 Erigeron canadensis HOM05D000626 ORTHO05D000824 1.9e-08 62.8 43 62.8
AUR62009997 Chenopodium quinoa HOM05D000626 ORTHO05D000824 2.5e-08 62.4 57 50.9
PGSC0003DMG400002687 Solanum tuberosum HOM05D000626 ORTHO05D000824 2.5e-08 62.4 44 63.6
VMungo0251G1652 Vigna mungo HOM05D000626 ORTHO05D000824 2.5e-08 62.4 42 73.8
Migut.N01338 Erythranthe guttata HOM05D000626 ORTHO05D000824 3.3e-08 62.0 55 61.8
Oeu028954.1 Olea europaea HOM05D000626 ORTHO05D000824 4.3e-08 61.6 44 63.6
SalBow5G3822 Salvia bowleyana HOM05D000626 ORTHO05D000824 4.3e-08 61.6 45 64.4
SalBow5G4393 Salvia bowleyana HOM05D000626 ORTHO05D000824 4.3e-08 61.6 45 64.4
Sopen09g003690 Solanum pennellii HOM05D000626 ORTHO05D000824 4.3e-08 61.6 44 63.6
EL10Ac9g21321 Beta vulgaris HOM05D000626 ORTHO05D000824 1.3e-07 60.1 57 52.6
Nitab4.5_0001922g0120 Nicotiana tabacum HOM05D000626 ORTHO05D000824 1.3e-07 60.1 44 59.1
HanXRQChr10g0297371 Helianthus annuus HOM05D000626 ORTHO05D000824 2.2e-07 59.3 43 65.1
Peaxi162Scf00113g00317 Petunia axillaris HOM05D000626 ORTHO05D000824 2.2e-07 59.3 44 63.6
HanXRQChr08g0211611 Helianthus annuus HOM05D000626 ORTHO05D000824 2.8e-07 58.9 43 67.4
Cc00_g32770 Coffea canephora HOM05D000626 ORTHO05D000824 3.7e-07 58.5 56 51.8
unitig_21.g20009 Utricularia gibba HOM05D000626 ORTHO05D000824 3.7e-07 58.5 54 50.0
PSO170G4861 Papaver somniferum HOM05D000626 ORTHO05D000824 4.8e-07 58.2 56 55.4
Ah.01g023370 Amaranthus hybridus HOM05D000983 ORTHO05D001922 8.2e-07 57.4 39 69.2
Phvul.002G181400 Phaseolus vulgaris HOM05D000626 ORTHO05D000824 1.1e-06 57.0 44 63.6
unitig_578.g16753 Utricularia gibba HOM05D000626 ORTHO05D000824 1.4e-06 56.6 45 55.6
MBI08_g42767_MAGBIO Magnolia biondii HOM05D000626 ORTHO05D000824 2.4e-06 55.8 39 66.7
HanXRQChr08g0211581 Helianthus annuus HOM05D000626 ORTHO05D000824 3.1e-06 55.5 44 59.1
PSO210G7766 Papaver somniferum HOM05D000626 ORTHO05D000824 3.1e-06 55.5 56 53.6
Aa31LG6G16860 Aethionema arabicum HOM05D004423 ORTHO05D005464 4.1e-06 55.1 43 60.5
Nn5g30868 Nelumbo nucifera HOM05D000626 ORTHO05D000824 5.3e-06 54.7 72 40.3
Actinidia18028 Actinidia chinensis HOM05D000626 ORTHO05D000824 6.9e-06 54.3 33 78.8


User provided reference genes

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