Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p040593 Quercus lobata HOM05D005343 ORTHO05D034042 1.6e-36 155.6 82 100.0
MD01G1125100 Malus domestica HOM05D005343 ORTHO05D007153 2.5e-08 62.0 41 75.6
MD07G1194800 Malus domestica HOM05D005343 ORTHO05D007153 2.5e-08 62.0 41 75.6
QL08p059100 Quercus lobata HOM05D005343 ORTHO05D007153 3.2e-08 61.6 41 75.6
Aa31LG10G10420 Aethionema arabicum HOM05D005343 ORTHO05D007153 7.1e-08 60.5 41 73.2
Cfa001500 Carpinus fangiana HOM05D005343 ORTHO05D007153 9.3e-08 60.1 41 73.2
Haze_17041 Corylus avellana HOM05D005343 ORTHO05D007153 9.3e-08 60.1 41 73.2
MELO3C025447.2 Cucumis melo HOM05D005343 ORTHO05D007153 9.3e-08 60.1 39 71.8
Solyc05g054600.3 Solanum lycopersicum HOM05D005343 ORTHO05D007153 9.3e-08 60.1 36 80.6
Sopen05g033080 Solanum pennellii HOM05D005343 ORTHO05D007153 9.3e-08 60.1 36 80.6
PGSC0003DMG400023422 Solanum tuberosum HOM05D005343 ORTHO05D007153 1.2e-07 59.7 41 70.7
Dinv25995 Davidia involucrata HOM05D005343 ORTHO05D007153 1.6e-07 59.3 36 80.6
Atru.BG.276.p Acer truncatum HOM05D005343 ORTHO05D007153 2.1e-07 58.9 41 70.7
ClCG09G020030 Citrullus lanatus HOM05D005343 ORTHO05D007153 2.1e-07 58.9 41 68.3
CsaV3_5G026430 Cucumis sativus L. HOM05D005343 ORTHO05D007153 2.1e-07 58.9 41 68.3
Manes.10G032600 Manihot esculenta HOM05D005343 ORTHO05D007153 2.1e-07 58.9 41 70.7
Prupe.2G232400 Prunus persica HOM05D005343 ORTHO05D007153 2.1e-07 58.9 41 70.7
Sed0015228 Sechium edule HOM05D005343 ORTHO05D007153 2.1e-07 58.9 41 68.3
CAN.G1013.7 Capsicum annuum HOM05D005343 ORTHO05D007153 2.7e-07 58.5 41 68.3
Cpa.g.sc1.387 Carica papaya HOM05D005343 ORTHO05D007153 2.7e-07 58.5 41 70.7
Glyma.10G289600 Glycine max HOM05D005343 ORTHO05D007153 2.7e-07 58.5 41 73.2
Glyma.20G099600 Glycine max HOM05D005343 ORTHO05D007153 2.7e-07 58.5 41 73.2
Lj5g0009366 Lotus japonicus HOM05D005343 ORTHO05D007153 2.7e-07 58.5 41 73.2
Lalb_Chr06g0164311 Lupinus albus HOM05D005343 ORTHO05D007153 2.7e-07 58.5 41 73.2
Nitab4.5_0001831g0140 Nicotiana tabacum HOM05D005343 ORTHO05D007153 2.7e-07 58.5 35 80.0
Nitab4.5_0006342g0040 Nicotiana tabacum HOM05D005343 ORTHO05D007153 2.7e-07 58.5 35 80.0
Peaxi162Scf00015g01517 Petunia axillaris HOM05D005343 ORTHO05D007153 2.7e-07 58.5 36 77.8
Sp5g07070 Schrenkiella parvula HOM05D005343 ORTHO05D007153 2.7e-07 58.5 41 68.3
GSVIVG01016575001 Vitis vinifera HOM05D005343 ORTHO05D007153 2.7e-07 58.5 41 70.7
A04p04540 Brassica napus HOM05D005343 ORTHO05D007153 3.5e-07 58.2 41 68.3
BraA04t16165Z Brassica rapa HOM05D005343 ORTHO05D007153 3.5e-07 58.2 41 68.3
CANSAT56G3076 Cannabis sativa HOM05D005343 ORTHO05D007153 3.5e-07 58.2 36 80.6
CANSAT56G3579 Cannabis sativa HOM05D005343 ORTHO05D007153 3.5e-07 58.2 36 80.6
Thhalv10010210m.g Eutrema salsugineum HOM05D005343 ORTHO05D007153 3.5e-07 58.2 41 68.3
AL5G36550 Arabidopsis lyrata HOM05D005343 ORTHO05D007153 4.6e-07 57.8 41 68.3
AT3G55400 Arabidopsis thaliana HOM05D005343 ORTHO05D007153 4.6e-07 57.8 41 68.3
BcaC07g39858 Brassica carinata HOM05D005343 ORTHO05D007153 4.6e-07 57.8 41 68.3
C08p30620 Brassica napus HOM05D005343 ORTHO05D007153 4.6e-07 57.8 41 68.3
BolC8t50678H Brassica oleracea HOM05D005343 ORTHO05D007153 4.6e-07 57.8 41 68.3
CARHR165410 Cardamine hirsuta HOM05D005343 ORTHO05D007153 4.6e-07 57.8 41 68.3
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 4.6e-07 57.8 41 70.7
FAN09G3765 Fragaria x ananassa HOM05D005343 ORTHO05D007153 4.6e-07 57.8 41 70.7
HanXRQChr09g0247741 Helianthus annuus HOM05D005343 ORTHO05D007153 4.6e-07 57.8 36 77.8
Medtr1g115295 Medicago truncatula HOM05D005343 ORTHO05D007153 4.6e-07 57.8 41 70.7
Hma1.2p1_2133F.1_g314780 Hydrangea macrophylla HOM05D005343 ORTHO05D007153 6.1e-07 57.4 36 77.8
Psat1g079800 Pisum sativum HOM05D005343 ORTHO05D034042 6.1e-07 57.4 41 70.7
SalBow2G3494 Salvia bowleyana HOM05D005343 ORTHO05D007153 6.1e-07 57.4 37 75.7
FAN02G3866 Fragaria x ananassa HOM05D005343 ORTHO05D007153 7.9e-07 57.0 41 68.3
Ca_11289_v3 Cicer arietinum L. HOM05D005343 ORTHO05D007153 1.0e-06 56.6 41 70.7
Ciclev10030995m.g Citrus clementina HOM05D005343 ORTHO05D007153 1.0e-06 56.6 41 68.3
COL.COLO4_14979 Corchorus olitorius HOM05D005343 ORTHO05D007153 1.0e-06 56.6 36 77.8
Nn7g38223 Nelumbo nucifera HOM05D005343 ORTHO05D007153 1.0e-06 56.6 36 75.0
TPR.G14011 Trifolium pratense HOM05D005343 ORTHO05D007153 1.0e-06 56.6 41 70.7
arahy.Tifrunner.gnm1.ann1.23BIS9 Arachis hypogaea HOM05D005343 ORTHO05D007153 1.3e-06 56.2 41 70.7
arahy.Tifrunner.gnm1.ann1.VWL0PE Arachis hypogaea HOM05D005343 ORTHO05D007153 1.3e-06 56.2 41 70.7
Carub.0005s2211 Capsella rubella HOM05D005343 ORTHO05D007153 1.3e-06 56.2 41 65.9
FvH4_6g51210 Fragaria vesca HOM05D005343 ORTHO05D007153 1.3e-06 56.2 41 68.3
FAN14G3830 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.3e-06 56.2 41 68.3
Phvul.007G011800 Phaseolus vulgaris HOM05D005343 ORTHO05D007153 1.3e-06 56.2 41 70.7
Potri.010G207300 Populus trichocarpa HOM05D005343 ORTHO05D007153 1.3e-06 56.2 41 68.3
THA.LOC104807113 Tarenaya hassleriana HOM05D005343 ORTHO05D007153 1.3e-06 56.2 41 68.3
TAR636G2167 Trochodendron aralioides HOM05D005343 ORTHO05D007153 1.3e-06 56.2 36 77.8
TAR636G2926 Trochodendron aralioides HOM05D005343 ORTHO05D007153 1.3e-06 56.2 36 77.8
A09p48330 Brassica napus HOM05D005343 ORTHO05D007153 1.8e-06 55.8 41 65.9
BraA09t40285Z Brassica rapa HOM05D005343 ORTHO05D007153 1.8e-06 55.8 41 65.9
Lsat_1_v5_gn_9_65321 Lactuca sativa HOM05D005343 ORTHO05D007153 1.8e-06 55.8 36 75.0
RcHm_v2.0_Chr3g0483011 Rosa chinensis HOM05D005343 ORTHO05D007153 2.3e-06 55.5 41 68.3
EL10Ac2g03414 Beta vulgaris HOM05D005343 ORTHO05D007153 3.0e-06 55.1 41 63.4
BcaC02g09754 Brassica carinata HOM05D005343 ORTHO05D007153 3.0e-06 55.1 41 63.4
C04p36970 Brassica napus HOM05D005343 ORTHO05D007153 3.0e-06 55.1 41 63.4
BolC4t25262H Brassica oleracea HOM05D005343 ORTHO05D007153 3.0e-06 55.1 41 63.4
AUR62040959 Chenopodium quinoa HOM05D005343 ORTHO05D007153 3.0e-06 55.1 41 65.9
Duzib114G0552 Durio zibethinus HOM05D005343 ORTHO05D007153 3.0e-06 55.1 36 75.0
Migut.E01300 Erythranthe guttata HOM05D005343 ORTHO05D007153 3.0e-06 55.1 41 63.4
FAN09G1498 Fragaria x ananassa HOM05D005343 ORTHO05D007153 3.0e-06 55.1 36 75.0
Medtr1g018280 Medicago truncatula HOM05D005343 ORTHO05D007153 3.0e-06 55.1 41 68.3
VMungo0720G2355 Vigna mungo HOM05D005343 ORTHO05D007153 3.0e-06 55.1 36 77.8
CiPaw.01G284500 Carya illinoinensis HOM05D005343 ORTHO05D007153 3.9e-06 54.7 41 65.9
Actinidia02893 Actinidia chinensis HOM05D005343 ORTHO05D007153 5.1e-06 54.3 45 62.2
Aqoxy4G02977 Aquilegia oxysepala HOM05D005343 ORTHO05D007153 5.1e-06 54.3 36 77.8
BcaB01g00104 Brassica carinata HOM05D005343 ORTHO05D007153 5.1e-06 54.3 41 63.4
Oeu059403.2 Olea europaea HOM05D005343 ORTHO05D007153 5.1e-06 54.3 36 72.2
ECA232G2382 Erigeron canadensis HOM05D005343 ORTHO05D007153 6.7e-06 53.9 36 72.2
Rhsim09G0164800 Rhododendron simsii HOM05D005343 ORTHO05D007153 6.7e-06 53.9 36 72.2
Sc04g0005120 Simmondsia chinensis HOM05D005343 ORTHO05D007153 6.7e-06 53.9 37 67.6


User provided reference genes

Program Settings