Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 3.6e-197 691.4 354 100.0
QL08p009302 Quercus lobata HOM05D000876 ORTHO05D000285 9.7e-78 294.7 192 82.3
QL01p041709 Quercus lobata HOM05D000876 ORTHO05D000285 3.7e-77 292.7 192 81.8
QL03p014458 Quercus lobata HOM05D000876 ORTHO05D000285 8.2e-77 291.6 192 81.2
QL06p033300 Quercus lobata HOM05D000876 ORTHO05D000285 1.4e-76 290.8 192 81.2
QL04p028038 Quercus lobata HOM05D000876 ORTHO05D000285 7.7e-67 258.5 170 81.2
QL07p002445 Quercus lobata HOM05D000876 ORTHO05D000285 3.6e-64 249.6 170 79.4
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 3.3e-49 199.9 164 63.4
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 2.6e-38 163.7 192 47.9
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 1.4e-36 157.9 166 53.0
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 6.6e-34 149.1 111 64.0
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 1.1e-33 148.3 114 60.5
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 1.5e-33 147.9 148 50.0
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 1.9e-33 147.5 114 60.5
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 2.5e-33 147.1 132 55.3
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 5.6e-33 146.0 150 50.7
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 9.5e-33 145.2 114 60.5
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 1.6e-32 144.4 114 59.6
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 1.6e-32 144.4 120 55.8
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 3.6e-32 143.3 114 58.8
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 6.8e-31 139.0 155 46.5
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 6.8e-31 139.0 115 53.9
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 1.2e-30 138.3 120 53.3
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 1.5e-30 137.9 175 42.9
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 2.0e-30 137.5 156 43.6
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 2.6e-30 137.1 156 48.7
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 3.4e-30 136.7 119 56.3
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 4.4e-30 136.3 160 42.5
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 5.8e-30 136.0 160 45.0
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 5.8e-30 136.0 157 44.6
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 7.5e-30 135.6 117 52.1
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 7.5e-30 135.6 189 38.6
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 9.9e-30 135.2 118 58.5
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 1.3e-29 134.8 119 52.1
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 2.2e-29 134.0 157 42.7
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 2.9e-29 133.7 153 47.1
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 2.9e-29 133.7 152 46.7
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 3.7e-29 133.3 156 42.9
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 3.7e-29 133.3 114 57.9
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 8.3e-29 132.1 155 42.6
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 1.4e-28 131.3 149 46.3
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 2.4e-28 130.6 151 45.0
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 3.2e-28 130.2 114 56.1
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 7.1e-28 129.0 157 40.8
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 1.6e-27 127.9 158 42.4
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 1.6e-27 127.9 114 54.4
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 4.6e-27 126.3 119 50.4
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 7.8e-27 125.6 152 45.4
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 1.3e-26 124.8 151 38.4
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 1.3e-26 124.8 190 34.7
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 5.1e-26 122.9 159 40.3
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 6.6e-26 122.5 106 56.6
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 1.1e-25 121.7 123 46.3
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 1.9e-25 120.9 115 47.8
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 1.9e-25 120.9 152 41.4
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 1.9e-25 120.9 159 40.3
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 2.5e-25 120.6 158 41.1
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 2.5e-25 120.6 159 39.6
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 4.3e-25 119.8 158 39.2
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 5.6e-25 119.4 109 50.5
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 2.1e-24 117.5 111 52.3
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 2.1e-24 117.5 159 37.1
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 3.6e-24 116.7 157 38.9
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 3.6e-24 116.7 148 41.2
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 8.1e-24 115.5 151 39.1
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 1.1e-23 115.2 97 53.6
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 1.1e-23 115.2 116 48.3
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 1.4e-23 114.8 164 38.4
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 4.0e-23 113.2 155 40.0
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 5.2e-23 112.8 165 38.2
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 6.8e-23 112.5 135 42.2
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 6.8e-23 112.5 106 53.8
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 8.9e-23 112.1 173 35.8
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 1.2e-22 111.7 159 36.5
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 1.2e-22 111.7 110 43.6
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 2.0e-22 110.9 135 42.2
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 2.6e-22 110.5 133 42.1
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 2.6e-22 110.5 133 42.1
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 5.8e-22 109.4 90 54.4
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 5.8e-22 109.4 158 36.7
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 5.8e-22 109.4 106 52.8
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 9.9e-22 108.6 158 36.7
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 9.9e-22 108.6 158 36.7
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 2.2e-21 107.5 157 36.3
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 2.9e-21 107.1 157 36.3
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 3.8e-21 106.7 160 36.9
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.1e-20 105.1 97 50.5
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 1.1e-20 105.1 146 36.3
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 1.9e-20 104.4 135 37.0
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 6.0e-19 99.4 127 42.5
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 3.0e-18 97.1 157 34.4
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 5.1e-18 96.3 90 45.6
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 6.6e-18 95.9 118 41.5
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 8.7e-18 95.5 132 36.4
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 1.1e-17 95.1 156 37.2
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 7.3e-17 92.4 186 36.0
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 9.6e-17 92.0 118 39.0
QL08p029247 Quercus lobata HOM05D013302 ORTHO05D015047 1.2e-16 91.7 187 36.9
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 3.6e-16 90.1 186 35.5
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 6.2e-16 89.4 87 49.4
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 1.1e-15 88.6 88 45.5
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.4e-15 88.2 87 48.3
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 6.4e-13 79.3 153 32.0
QL02p025824 Quercus lobata HOM05D013302 ORTHO05D015047 5.4e-12 76.3 93 48.4
CiPaw.10G065300 Carya illinoinensis HOM05D000876 ORTHO05D000285 2.3e-10 70.9 189 30.7
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 6.6e-10 69.3 80 47.5
CANSAT56G2973 Cannabis sativa HOM05D000876 ORTHO05D000285 1.5e-09 68.2 192 28.1
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 5.6e-09 66.2 192 27.6
Sed0005915 Sechium edule HOM05D000876 ORTHO05D000285 9.6e-09 65.5 186 30.1
CiPaw.15G017800 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.3e-08 65.1 195 27.2
Os12g0207200 Oryza sativa ssp. japonica HOM05D000876 ORTHO05D000285 4.8e-08 63.2 197 29.9
Potri.018G075600 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.8e-07 61.2 206 27.7
QL10p013151 Quercus lobata HOM05D015848 ORTHO05D000285 2.4e-07 60.8 271 28.0
QL11p000053 Quercus lobata HOM05D015848 ORTHO05D000285 2.4e-07 60.8 271 28.0
CANSAT54G1231 Cannabis sativa HOM05D000876 ORTHO05D000285 3.1e-07 60.5 195 26.2
MD15G1314200 Malus domestica HOM05D000876 ORTHO05D000285 3.1e-07 60.5 249 26.5
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 4.0e-07 60.1 192 26.0
BcaNung04184 Brassica carinata HOM05D007280 ORTHO05D009108 5.3e-07 59.7 45 60.0
CSS0033511 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 5.3e-07 59.7 185 30.3
Medtr4g046743 Medicago truncatula HOM05D000876 ORTHO05D000285 6.9e-07 59.3 255 26.7
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 9.0e-07 58.9 191 28.3
CANSAT35G1570 Cannabis sativa HOM05D000876 ORTHO05D000285 1.2e-06 58.5 189 25.9
Lj2g0008174 Lotus japonicus HOM05D000876 ORTHO05D000285 1.5e-06 58.2 192 25.5
Os05g0596300 Oryza sativa ssp. japonica HOM05D031168 ORTHO05D030408 2.0e-06 57.8 188 27.7
Sc20g0002990 Simmondsia chinensis HOM05D018396 ORTHO05D018884 2.0e-06 57.8 217 28.6
Medtr1g080080 Medicago truncatula HOM05D000876 ORTHO05D000285 2.6e-06 57.4 193 28.5
Medtr2g086350 Medicago truncatula HOM05D000876 ORTHO05D000285 2.6e-06 57.4 193 28.5
Medtr5g054570 Medicago truncatula HOM05D000876 ORTHO05D000285 2.6e-06 57.4 193 28.5
Ciclev10013387m.g Citrus clementina HOM05D000876 ORTHO05D034797 4.5e-06 56.6 206 26.7
Medtr2g018710 Medicago truncatula HOM05D000876 ORTHO05D000285 5.8e-06 56.2 193 28.5
CSS0021579 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 7.6e-06 55.8 182 30.2
Glyma.01G052000 Glycine max HOM05D000876 ORTHO05D000285 7.6e-06 55.8 211 27.5
TPR.G30704 Trifolium pratense HOM05D000876 ORTHO05D000285 9.9e-06 55.5 206 24.8


User provided reference genes

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