Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 8.8e-278 959.9 578 100.0
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.9e-192 676.4 572 66.1
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 6.2e-191 671.4 560 67.5
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 2.5e-184 649.4 596 63.4
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 2.9e-156 556.2 571 55.5
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 3.2e-155 552.7 577 60.8
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 5.3e-150 535.4 571 53.9
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.6e-149 533.9 575 56.0
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 5.9e-149 531.9 590 56.3
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.5e-147 527.3 570 58.2
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 4.7e-146 522.3 553 53.5
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 8.8e-145 518.1 577 55.3
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.2e-144 517.7 574 51.9
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 4.4e-144 515.8 550 55.1
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.8e-143 512.3 567 52.9
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 8.3e-143 511.5 569 59.6
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 8.3e-143 511.5 567 59.8
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 5.4e-142 508.8 579 50.6
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 9.1e-142 508.1 562 55.5
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 1.6e-141 507.3 572 52.1
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.0e-140 504.6 575 52.3
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 5.0e-140 502.3 548 53.1
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 8.6e-140 501.5 572 51.7
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 8.6e-140 501.5 572 51.7
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.1e-139 501.1 538 53.3
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.5e-139 500.7 584 52.6
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.9e-139 500.4 573 52.9
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.2e-138 497.7 584 50.9
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 3.6e-138 496.1 573 56.2
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 6.1e-138 495.4 577 52.2
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.3e-137 493.4 565 53.5
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 3.0e-137 493.0 564 51.2
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 5.2e-137 492.3 594 48.7
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 6.8e-137 491.9 572 51.9
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.5e-136 490.7 569 53.1
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.4e-136 489.2 574 50.5
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 3.7e-135 486.1 574 50.7
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 8.3e-135 485.0 557 51.2
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 1.4e-134 484.2 578 51.7
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 2.0e-133 480.3 586 49.3
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 2.7e-133 479.9 552 48.7
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.5e-133 479.6 577 51.0
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.5e-133 479.2 562 52.7
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 5.9e-133 478.8 576 52.3
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 7.8e-133 478.4 544 50.4
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 1.3e-132 477.6 573 52.2
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 5.0e-132 475.7 557 49.4
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 8.6e-132 474.9 569 56.6
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 8.6e-132 474.9 642 48.4
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.9e-131 473.8 573 51.7
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 9.5e-131 471.5 577 54.6
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 1.6e-130 470.7 581 55.6
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 2.1e-130 470.3 543 50.3
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 4.7e-130 469.2 519 50.1
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 4.7e-130 469.2 577 47.1
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 8.0e-130 468.4 577 51.5
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 8.0e-130 468.4 578 49.1
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 8.9e-129 464.9 577 50.8
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 1.5e-128 464.2 549 48.1
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 2.2e-127 460.3 576 47.2
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 6.4e-127 458.8 575 46.8
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 2.4e-126 456.8 597 47.4
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 5.4e-126 455.7 572 52.6
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 5.9e-125 452.2 550 48.7
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.3e-124 451.1 587 45.5
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 1.7e-124 450.7 550 48.5
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 3.0e-124 449.9 580 48.8
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 5.0e-124 449.1 588 49.3
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 1.1e-123 448.0 579 45.6
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 7.3e-123 445.3 550 48.0
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 9.5e-123 444.9 503 57.7
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 4.4e-120 436.0 575 53.4
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 4.9e-119 432.6 577 44.5
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 4.9e-119 432.6 575 52.9
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 8.3e-119 431.8 580 47.1
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 3.2e-118 429.9 575 52.9
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 5.4e-118 429.1 569 46.0
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.2e-117 427.9 583 44.8
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 2.3e-116 423.7 583 45.3
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 3.0e-116 423.3 551 45.6
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.5e-115 421.0 555 47.0
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.9e-115 420.6 582 44.2
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.1e-113 413.3 603 45.3
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 4.0e-113 412.9 577 44.0
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 2.6e-112 410.2 578 44.8
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 4.4e-112 409.5 586 43.3
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 1.3e-111 407.9 553 43.0
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.2e-109 401.4 575 46.6
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 1.7e-108 397.5 466 50.4
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 2.3e-108 397.1 576 41.8
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.6e-108 395.6 393 55.0
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 5.6e-107 392.5 543 42.9
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 1.5e-104 384.4 556 41.9
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 2.0e-104 384.0 575 42.6
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 2.0e-104 384.0 585 41.5
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 2.6e-104 383.6 570 41.2
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 3.4e-104 383.3 579 41.6
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 5.8e-104 382.5 575 39.8
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 7.6e-104 382.1 575 39.8
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.7e-103 380.9 258 77.5
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 3.8e-103 379.8 553 42.3
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 7.1e-102 375.6 550 40.9
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 1.2e-101 374.8 575 39.1
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.0e-101 372.5 461 48.2
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.0e-100 371.7 468 54.5
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.3e-100 371.3 581 43.7
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 2.3e-100 370.5 591 43.0
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 1.1e-99 368.2 572 39.3
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 1.1e-99 368.2 271 70.5
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.5e-99 367.9 572 39.3
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 2.5e-99 367.1 562 39.9
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 4.3e-99 366.3 573 41.0
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 4.7e-98 362.8 577 38.6
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 4.0e-97 359.8 470 49.6
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.9e-97 359.0 359 55.2
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 7.6e-96 355.5 577 40.0
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 8.4e-95 352.1 581 39.9
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 1.1e-94 351.7 575 39.0
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 7.8e-93 345.5 472 49.2
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.9e-91 340.9 427 48.2
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 2.8e-90 337.0 570 38.8
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 3.1e-89 333.6 569 40.8
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 9.0e-89 332.0 462 47.4
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 2.4e-81 307.4 474 44.5
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 1.6e-77 294.7 530 37.9
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.6e-77 294.7 558 39.4
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.9e-75 287.7 250 61.6
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.5e-75 287.3 377 45.1
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.3e-68 265.0 249 61.4
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.6e-64 250.8 308 48.1
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.3e-55 221.9 434 35.0
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.1e-52 209.9 248 45.2
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.6e-51 207.6 408 31.9
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.8e-44 184.9 152 67.1
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.9e-44 183.7 152 67.1
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 2.2e-42 177.9 400 37.8
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 5.0e-39 166.8 155 60.0
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 1.0e-36 159.1 161 49.1
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 5.2e-36 156.8 139 58.3
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.0e-31 140.2 249 38.6
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 7.2e-30 136.3 575 23.0
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 6.1e-29 133.3 146 45.9
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.0e-27 128.3 112 59.8
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 2.6e-27 127.9 162 46.3
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.6e-27 127.9 317 28.4
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.7e-27 126.7 97 67.0
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 3.7e-26 124.0 537 25.5
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.1e-25 122.5 172 42.4
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.5e-24 117.5 211 42.7
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.0e-23 115.9 105 59.0
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.3e-23 114.8 123 48.8
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 6.6e-23 113.2 473 23.3
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.5e-22 112.1 164 41.5
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 2.5e-22 111.3 120 45.0
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 8.0e-21 106.3 92 60.9
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 6.8e-20 103.2 132 42.4
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 1.5e-19 102.1 529 22.5
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 5.7e-19 100.1 533 22.1
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 3.7e-18 97.4 73 68.5
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 3.7e-18 97.4 125 41.6
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.9e-18 97.1 84 58.3
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.8e-17 95.1 79 62.0
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.6e-16 92.0 205 34.6
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.6e-16 92.0 68 69.1
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 1.7e-15 88.6 529 20.8
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 8.6e-15 86.3 175 32.6
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 5.6e-14 83.6 118 44.1
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.6e-13 80.9 111 39.6
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 3.6e-13 80.9 438 22.4
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 5.2e-12 77.0 111 38.7
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.0e-11 75.1 65 56.9
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.0e-11 75.1 65 56.9
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 2.9e-10 71.2 86 40.7
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.9e-10 70.5 68 52.9
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.4e-09 68.9 55 61.8
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 7.0e-09 66.6 67 53.7
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 5.0e-07 60.5 374 19.8
Solyc01g150163.1 Solanum lycopersicum HOM05D003578 ORTHO05D004021 1.5e-06 58.9 81 43.2
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.5e-06 58.2 62 53.2
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 3.3e-06 57.8 186 25.8


User provided reference genes

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