Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 3.4e-180 636.0 557 100.0
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 2.1e-161 573.5 557 95.3
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 1.1e-93 348.6 489 67.1
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 8.6e-91 339.0 459 73.0
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 1.5e-90 338.2 459 68.0
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 2.3e-88 330.9 322 68.3
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 1.2e-87 328.6 454 68.7
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 2.4e-85 320.9 327 63.9
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 2.4e-85 320.9 291 65.6
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 1.3e-83 315.1 464 65.7
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 1.5e-82 311.6 274 68.6
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 4.3e-82 310.1 267 69.3
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 8.9e-80 302.4 450 41.1
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 3.4e-79 300.4 426 59.4
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 3.7e-78 297.0 426 60.1
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 4.9e-78 296.6 426 53.5
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 1.4e-77 295.0 426 56.1
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 3.2e-77 293.9 433 52.4
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 4.1e-77 293.5 293 61.4
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 9.2e-77 292.4 456 57.9
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 1.2e-76 292.0 451 63.2
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 3.5e-76 290.4 436 71.3
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 4.6e-76 290.0 269 66.2
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 6.0e-76 289.7 433 65.1
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 6.0e-76 289.7 449 45.2
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 7.8e-76 289.3 427 72.6
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 7.8e-76 289.3 464 68.5
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.7e-75 288.1 460 69.1
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 1.7e-75 288.1 289 61.9
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 3.9e-75 287.0 315 58.1
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 3.9e-75 287.0 315 58.1
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 8.6e-75 285.8 306 60.5
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 8.6e-75 285.8 436 65.4
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.1e-74 285.4 314 58.9
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 1.1e-74 285.4 292 59.9
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 4.3e-74 283.5 271 64.9
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 5.6e-74 283.1 269 65.4
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 4.7e-73 280.0 453 59.6
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 1.1e-72 278.9 409 74.3
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 2.6e-71 274.2 284 60.9
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 9.8e-71 272.3 425 44.0
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 1.7e-70 271.6 427 70.5
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 2.9e-70 270.8 319 56.4
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 8.3e-70 269.2 411 76.9
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 1.9e-69 268.1 272 62.5
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 3.2e-69 267.3 290 59.3
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 1.6e-68 265.0 255 65.1
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 2.1e-68 264.6 452 61.7
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 2.7e-68 264.2 301 56.8
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 4.6e-68 263.5 273 60.4
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 6.0e-68 263.1 460 66.5
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 6.0e-68 263.1 290 58.3
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 6.6e-67 259.6 277 60.6
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 1.1e-66 258.8 272 57.7
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 1.1e-66 258.8 275 60.0
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.5e-66 258.5 387 57.1
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 4.3e-66 256.9 300 55.3
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 4.3e-66 256.9 387 51.7
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 4.3e-66 256.9 429 58.0
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 1.8e-64 251.5 387 67.4
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 8.9e-64 249.2 265 60.4
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 2.0e-63 248.1 445 54.8
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 5.8e-63 246.5 462 54.5
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 6.4e-62 243.0 443 56.9
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 3.2e-61 240.7 425 60.5
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 2.1e-60 238.0 264 58.7
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 6.0e-60 236.5 264 58.7
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 7.8e-60 236.1 277 55.6
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 7.8e-60 236.1 277 55.6
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 1.0e-59 235.7 280 56.1
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 1.7e-59 235.0 442 63.8
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 2.3e-59 234.6 277 55.6
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 2.3e-59 234.6 277 55.6
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 3.0e-59 234.2 264 57.2
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 6.6e-59 233.0 400 54.2
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 6.6e-59 233.0 268 57.8
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 1.1e-58 232.3 263 58.2
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 3.3e-58 230.7 277 55.2
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 4.3e-58 230.3 270 56.7
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 5.6e-58 229.9 394 62.4
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 7.3e-58 229.6 140 82.9
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 2.6e-55 221.1 423 46.1
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 2.4e-53 214.5 388 73.5
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 3.5e-52 210.7 229 61.1
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 7.8e-52 209.5 226 61.1
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 5.1e-51 206.8 222 63.1
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 1.1e-50 205.7 392 71.9
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 4.3e-50 203.8 392 71.7
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 4.4e-47 193.7 219 63.0
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 5.8e-47 193.4 260 51.9
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 5.8e-47 193.4 152 68.4
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 1.1e-45 189.1 463 49.0
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 1.0e-43 182.6 172 56.4
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 1.0e-43 182.6 235 54.0
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 1.3e-43 182.2 298 46.0
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 3.0e-43 181.0 222 56.8
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 1.1e-40 172.6 217 56.7
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 3.1e-40 171.0 217 56.2
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 9.6e-34 149.4 254 46.9
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 2.6e-31 141.4 140 52.1
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 3.5e-28 131.0 417 29.3
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 5.1e-27 127.1 125 63.2
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 5.1e-27 127.1 125 63.2
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 6.2e-25 120.2 323 49.2
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 4.5e-23 114.0 227 67.0
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 3.8e-22 110.9 420 26.2
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 8.4e-22 109.8 133 45.1
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 1.8e-19 102.1 232 46.1
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.0e-15 88.6 51 76.5
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 3.4e-15 87.8 51 82.4
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 7.7e-15 86.7 234 30.3
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 1.3e-14 85.9 202 32.2
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 8.5e-14 83.2 214 29.0
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 8.5e-14 83.2 45 84.4
MELO3C017354.2 Cucumis melo HOM05D006707 ORTHO05D008243 3.3e-10 71.2 41 82.9
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 5.7e-10 70.5 51 64.7
Manes.06G007451 Manihot esculenta HOM05D006707 ORTHO05D008243 1.8e-08 65.5 41 75.6
QL10p028425 Quercus lobata HOM05D006707 ORTHO05D008243 9.1e-08 63.2 39 82.1
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 7.7e-07 60.1 154 30.5
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.0e-06 59.7 154 29.9
Thecc.02G273600 Theobroma cacao HOM05D000424 ORTHO05D008586 2.9e-06 58.2 150 26.7
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 3.8e-06 57.8 127 29.9
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 5.0e-06 57.4 154 28.6


User provided reference genes

Program Settings