Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 2.7e-169 599.7 557 100.0
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 3.2e-162 576.2 557 95.3
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 4.7e-89 333.2 322 69.6
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 2.9e-86 323.9 321 63.9
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 8.3e-86 322.4 453 66.4
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 3.2e-85 320.5 286 66.1
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 7.0e-85 319.3 274 69.3
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 1.6e-84 318.2 267 70.0
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 2.3e-83 314.3 491 63.7
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 3.0e-83 313.9 432 73.8
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 6.2e-81 306.2 432 69.4
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 2.3e-80 304.3 426 59.2
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 2.2e-78 297.7 289 63.0
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 5.4e-77 293.1 460 63.7
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 6.0e-76 289.7 286 60.8
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 7.8e-76 289.3 275 65.5
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 1.3e-75 288.5 269 65.8
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 2.3e-75 287.7 277 62.5
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.0e-75 287.3 275 65.1
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 5.1e-75 286.6 269 65.8
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 5.6e-74 283.1 317 56.8
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 5.6e-74 283.1 317 56.8
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.8e-73 280.8 287 61.3
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 2.8e-73 280.8 450 38.7
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 6.2e-73 279.6 284 61.3
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 1.1e-72 278.9 426 54.2
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 5.2e-72 276.6 426 51.4
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 1.2e-71 275.4 443 62.8
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 2.6e-71 274.2 286 61.9
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 4.4e-71 273.5 427 71.0
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 4.4e-71 273.5 286 61.9
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 7.6e-71 272.7 411 80.3
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 7.6e-71 272.7 426 57.5
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 1.3e-70 271.9 433 50.1
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 3.7e-70 270.4 455 55.6
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 4.9e-70 270.0 322 56.2
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 4.9e-70 270.0 255 65.5
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 8.4e-70 269.2 455 67.0
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 8.4e-70 269.2 461 67.0
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 8.4e-70 269.2 436 69.3
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 1.1e-69 268.9 276 59.8
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 1.1e-69 268.9 286 60.8
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 1.9e-69 268.1 274 60.6
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 1.9e-69 268.1 433 62.8
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 3.2e-69 267.3 455 69.5
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 2.7e-68 264.2 436 63.1
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 3.5e-68 263.8 249 64.7
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 4.6e-68 263.5 449 42.5
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 1.3e-67 261.9 259 64.1
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 2.3e-67 261.2 293 56.0
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 5.1e-67 260.0 453 57.2
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 8.6e-67 259.2 275 60.0
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 1.1e-66 258.8 272 57.4
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 1.1e-66 258.8 429 61.3
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 4.7e-65 253.4 425 41.6
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 4.0e-64 250.4 444 57.4
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 8.9e-64 249.2 427 68.1
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 2.0e-63 248.1 265 60.0
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 5.8e-63 246.5 277 56.7
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 5.8e-63 246.5 277 56.7
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 9.9e-63 245.7 425 63.3
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 2.9e-62 244.2 280 56.8
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 4.9e-62 243.4 264 59.1
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 1.4e-61 241.9 278 56.5
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 1.4e-61 241.9 278 56.5
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 1.9e-61 241.5 264 58.7
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 2.4e-61 241.1 264 57.6
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 3.2e-61 240.7 270 57.8
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 3.2e-61 240.7 452 59.1
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 3.2e-61 240.7 441 57.1
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 1.2e-60 238.8 263 58.6
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 2.1e-60 238.0 278 56.1
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 1.7e-59 235.0 387 54.3
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 5.1e-59 233.4 268 57.5
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 6.6e-59 233.0 387 48.8
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 1.1e-58 232.3 394 57.9
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 3.3e-58 230.7 387 64.9
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 3.3e-58 230.7 462 52.8
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 7.6e-55 219.5 142 78.2
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 3.8e-54 217.2 388 76.8
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 1.2e-52 212.2 446 61.4
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 1.6e-52 211.8 229 61.1
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 3.5e-52 210.7 226 61.1
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 6.0e-52 209.9 222 63.1
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 1.7e-51 208.4 392 75.3
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 6.6e-51 206.5 392 75.0
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 3.3e-50 204.1 423 44.0
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 7.4e-50 203.0 394 59.4
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 1.8e-48 198.4 219 63.9
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 2.0e-47 194.9 260 51.9
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 1.7e-46 191.8 152 67.8
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 4.2e-45 187.2 290 47.6
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 6.0e-44 183.3 147 63.3
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 6.0e-44 183.3 233 54.1
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 3.0e-43 181.0 287 47.0
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 8.7e-43 179.5 222 56.3
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 4.0e-40 170.6 217 56.2
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-39 169.1 217 55.8
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 5.7e-34 150.2 254 46.5
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 1.5e-31 142.1 140 52.1
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.3e-27 129.0 125 64.0
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 1.3e-27 129.0 125 64.0
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 3.4e-23 114.4 246 36.6
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 2.2e-22 111.7 133 45.9
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 3.2e-21 107.8 164 36.6
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 3.6e-20 104.4 239 33.1
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.8e-16 92.0 227 62.6
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 1.7e-14 85.5 45 86.7
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.1e-13 82.8 214 29.0
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 1.9e-13 82.0 69 53.6
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 2.0e-10 72.0 68 54.4
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.3e-09 69.3 38 73.7
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 1.1e-08 66.2 40 75.0
MELO3C017354.2 Cucumis melo HOM05D006707 ORTHO05D008243 1.1e-08 66.2 38 81.6
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 1.1e-08 66.2 37 81.1
Psat7g256640 Pisum sativum HOM05D007340 ORTHO05D008979 2.0e-07 62.0 127 30.7
Manes.06G007451 Manihot esculenta HOM05D006707 ORTHO05D008243 5.9e-07 60.5 37 75.7
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 7.7e-07 60.1 127 30.7
Psat2g009000 Pisum sativum HOM05D007340 ORTHO05D008979 1.0e-06 59.7 127 29.9
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.3e-06 59.3 128 31.2
FAN03G2556 Fragaria x ananassa HOM05D006556 ORTHO05D008146 1.3e-06 59.3 172 29.7
FAN06G0419 Fragaria x ananassa HOM05D006556 ORTHO05D008146 1.3e-06 59.3 172 29.7
Lj5g0026289 Lotus japonicus HOM05D007340 ORTHO05D008979 1.3e-06 59.3 154 28.6
Thecc.02G273600 Theobroma cacao HOM05D000424 ORTHO05D008586 2.2e-06 58.5 150 26.7
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 2.9e-06 58.2 94 35.1
CSS0040738 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 3.8e-06 57.8 151 29.8
CSS0036990 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 6.5e-06 57.0 176 28.4
RcHm_v2.0_Chr1g0326501 Rosa chinensis HOM05D006556 ORTHO05D008146 6.5e-06 57.0 172 30.2


User provided reference genes

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