Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 4809.2 2439 100.0
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 3943.7 2461 81.1
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 3915.2 2403 82.4
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 3821.6 2447 78.5
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 3333.5 2431 68.9
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 3319.3 2449 68.4
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 3305.0 2439 67.5
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 3275.7 2437 67.7
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 3251.1 2439 66.1
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3247.6 2473 65.3
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3238.7 2473 65.0
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3237.6 2473 65.1
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 3226.4 2440 67.1
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3221.8 2473 64.9
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 3196.4 2441 66.2
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 3186.4 2433 66.8
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 3178.7 2435 67.3
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 3144.4 2449 65.3
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 3122.4 2436 64.5
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 3119.7 2446 64.6
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 3116.6 2436 64.4
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 3109.3 2446 64.8
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 3107.4 2448 64.8
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 3085.0 2441 64.4
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 3082.7 2436 64.8
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 3078.9 2450 63.7
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 3065.0 2434 63.6
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 3055.4 2491 62.9
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 3052.3 2444 63.3
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3030.4 2473 61.8
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 3023.8 2473 61.7
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 3013.4 2433 62.1
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 3001.5 2436 62.1
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 3001.1 2437 62.1
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 3001.1 2438 62.2
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2992.6 2429 61.8
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2982.2 2444 61.7
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2967.9 2439 61.5
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2966.0 2481 60.7
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2953.3 2445 61.1
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2924.0 2437 60.8
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2910.9 2377 62.2
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2886.3 2114 68.6
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2872.0 2429 60.8
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2867.0 2490 60.3
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2853.5 2446 60.3
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2842.8 2436 60.7
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2814.6 2448 58.6
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2780.7 2441 59.6
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2774.6 2440 59.4
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2742.2 2404 58.6
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2715.6 2437 58.9
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2695.2 2433 57.1
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2669.0 2450 56.0
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2662.5 2444 56.8
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2659.4 2446 56.7
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2658.6 2449 56.4
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2644.0 2454 55.5
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2628.6 2441 57.6
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2625.9 2444 55.9
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2620.5 2453 55.6
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2612.4 2444 56.4
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2609.7 2443 55.2
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2599.7 2474 55.9
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2599.3 2401 56.2
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2596.2 2445 56.2
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2595.1 2445 55.9
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2585.8 2445 55.8
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2579.7 2450 55.4
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2578.9 2442 56.1
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2575.4 2472 55.2
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2572.0 2446 54.3
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2568.9 2449 54.3
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2565.8 2466 55.2
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2565.0 2439 54.5
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2546.2 2454 53.5
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2543.8 2450 54.0
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2542.7 2453 54.2
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2531.9 2437 54.3
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2531.1 2454 54.0
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2527.7 2454 54.1
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2521.1 2443 54.6
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2510.7 2473 53.8
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2504.6 2085 61.9
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2504.2 2450 53.1
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2498.4 2085 62.0
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2491.1 2447 52.5
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 2250.7 1861 60.9
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2219.1 2291 51.2
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 2145.2 2410 47.8
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 2104.7 2431 46.9
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1930.2 1516 64.1
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1889.4 1479 64.0
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1876.7 1479 63.7
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1867.0 2522 42.5
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1802.3 1379 65.7
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1798.5 2378 43.3
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1798.1 1658 56.8
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1540.4 1462 55.3
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1497.6 1107 67.0
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1440.2 1382 54.6
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1364.0 1427 51.6
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1313.1 1570 45.5
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1268.4 1140 57.7
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1173.3 1056 56.2
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 3.3e-310 1069.7 1051 53.1
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 1.0e-306 1058.1 1396 43.5
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 2.2e-306 1057.0 1029 53.8
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 6.7e-287 992.3 917 55.4
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 6.8e-279 965.7 2589 28.7
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.4e-247 861.7 801 55.9
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 6.8e-247 859.4 2170 30.1
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 8.9e-247 859.0 2113 29.6
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 5.4e-244 849.7 863 52.6
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 9.5e-241 839.0 1487 36.4
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 3.5e-235 820.5 765 53.3
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 2.3e-202 711.4 2370 25.9
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 2.5e-185 654.8 579 56.5
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 6.5e-173 613.6 831 40.7
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.9e-132 479.2 475 53.7
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 5.6e-132 477.6 474 54.4
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 2.3e-130 472.2 406 60.1
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 1.9e-124 452.6 333 67.0
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.1e-100 373.6 318 62.3
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 1.1e-100 373.6 231 77.9
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 3.1e-98 365.5 336 55.4
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 4.6e-86 325.1 395 45.1
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 6.9e-82 311.2 442 41.2
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 1.2e-78 300.4 335 48.1
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 2.3e-69 269.6 240 57.1
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 2.8e-67 262.7 437 35.7
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.5e-65 256.9 483 34.8
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.0e-61 244.2 351 41.9
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 1.2e-57 230.7 150 76.0
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 1.2e-54 220.7 314 42.7
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.6e-49 203.8 185 54.6
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 2.7e-49 203.0 146 68.5
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 4.2e-47 195.7 247 47.0
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.6e-46 193.7 122 77.9
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.4e-42 180.6 274 42.7
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 1.2e-41 177.6 123 69.9
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 3.5e-41 176.0 193 53.9
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 1.3e-40 174.1 801 22.6
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 5.2e-37 162.2 108 76.9
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 4.4e-36 159.1 240 39.2
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 9.8e-36 157.9 149 56.4
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 2.1e-30 140.2 320 33.8
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 6.8e-29 135.2 85 76.5
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 3.4e-28 132.9 125 52.8
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 5.8e-28 132.1 86 69.8
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 7.5e-28 131.7 289 30.8
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 1.1e-26 127.9 343 27.1
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 1.5e-23 117.5 147 47.6
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 3.3e-23 116.3 139 43.9
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 4.4e-20 105.9 68 75.0
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 4.1e-18 99.4 120 44.2
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.6e-17 95.9 200 35.0
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 6.0e-17 95.5 74 64.9
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 6.0e-17 95.5 115 45.2
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 7.3e-15 88.6 97 44.3
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 2.1e-14 87.0 126 42.9
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 2.3e-13 83.6 99 44.4
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.6e-09 69.3 67 50.7
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.0e-09 68.9 65 47.7
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 1.0e-08 68.2 52 63.5
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 1.0e-08 68.2 52 63.5
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 1.0e-08 68.2 52 63.5
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 1.0e-08 68.2 78 46.2
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 6.6e-08 65.5 114 40.4
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 8.1e-06 58.5 36 77.8


User provided reference genes

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