Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 0.0e+00 1327.8 663 100.0
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 8.4e-216 754.2 533 72.4
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 3.1e-210 735.7 536 70.3
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 2.5e-167 593.2 537 58.1
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 1.6e-161 573.9 537 56.4
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 2.7e-161 573.2 537 57.9
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 1.2e-156 557.8 539 55.5
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 7.0e-154 548.5 538 54.3
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 2.9e-152 543.1 539 53.6
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 9.5e-151 538.1 524 54.0
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 1.2e-150 537.7 525 53.9
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 1.2e-148 531.2 527 53.5
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 8.3e-147 525.0 550 51.8
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 1.8e-146 523.9 535 53.5
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 4.1e-146 522.7 535 51.8
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 1.2e-145 521.2 534 52.8
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 2.3e-144 516.9 545 52.5
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.5e-143 514.2 535 52.7
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 5.6e-143 512.3 554 49.8
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 5.6e-143 512.3 618 47.7
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 7.3e-143 511.9 535 52.7
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 2.8e-142 510.0 533 50.5
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 8.0e-142 508.4 534 51.7
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 1.5e-140 504.2 553 49.9
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 5.7e-140 502.3 535 52.0
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 2.2e-139 500.4 537 49.9
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 4.9e-139 499.2 536 50.0
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 2.0e-137 493.8 493 54.0
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.0e-136 491.5 535 50.5
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 1.3e-136 491.1 468 54.7
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 1.5e-135 487.6 535 49.3
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 1.8e-133 480.7 541 47.0
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 2.3e-133 480.3 535 46.9
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 3.1e-133 479.9 465 54.0
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 3.1e-133 479.9 534 48.3
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 5.2e-133 479.2 486 50.8
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 3.4e-132 476.5 571 45.5
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 6.4e-131 472.2 581 45.6
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 9.2e-130 468.4 537 47.5
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 2.0e-129 467.2 538 47.0
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 1.7e-128 464.2 450 52.9
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 1.1e-127 461.5 535 46.7
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 1.5e-127 461.1 351 64.7
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 2.5e-127 460.3 514 47.5
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 5.6e-127 459.1 514 48.1
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 9.5e-127 458.4 535 46.2
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 1.2e-126 458.0 536 48.1
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 2.1e-126 457.2 534 45.3
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 4.7e-126 456.1 652 41.9
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 7.5e-124 448.7 538 46.5
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 1.3e-123 448.0 535 48.6
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 2.1e-121 440.7 412 56.3
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 1.1e-119 434.9 537 45.3
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 4.3e-119 433.0 537 44.9
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 5.6e-119 432.6 535 44.9
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 9.5e-119 431.8 543 45.7
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 3.6e-118 429.9 541 45.5
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 8.1e-118 428.7 542 44.8
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 1.1e-117 428.3 541 45.5
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 1.8e-117 427.6 541 45.3
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 2.4e-117 427.2 541 45.1
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 2.4e-117 427.2 533 45.0
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 4.0e-117 426.4 534 45.9
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 2.0e-116 424.1 541 45.1
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 4.4e-116 422.9 525 45.0
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 4.4e-116 422.9 544 45.0
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 7.6e-116 422.2 485 47.4
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.3e-115 421.4 525 44.6
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 7.1e-114 415.6 468 49.8
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 6.0e-113 412.5 536 44.0
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 3.3e-111 406.8 463 47.9
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 7.3e-111 405.6 426 52.1
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 9.6e-111 405.2 534 43.3
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 6.2e-110 402.5 414 50.7
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 9.9e-108 395.2 347 55.3
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 4.9e-107 392.9 464 47.2
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 2.1e-105 387.5 427 48.7
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 1.9e-103 380.9 448 47.5
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 2.5e-103 380.6 471 45.9
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 5.6e-103 379.4 450 47.8
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 2.8e-102 377.1 534 42.1
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 5.1e-96 356.3 425 45.6
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 5.6e-95 352.8 535 41.3
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 1.5e-92 344.7 338 51.8
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 1.7e-91 341.3 549 36.4
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 2.9e-91 340.5 352 49.4
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 4.9e-91 339.7 518 41.3
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 3.2e-90 337.0 416 44.2
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 8.7e-88 328.9 340 50.3
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.1e-87 328.6 345 49.3
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 2.1e-86 324.3 421 43.0
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 1.1e-79 302.0 346 45.7
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 1.6e-73 281.6 276 55.4
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 8.2e-70 269.2 379 40.9
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 8.5e-67 259.2 229 53.7
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 4.2e-50 203.8 292 38.4
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 1.8e-48 198.4 523 28.7
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 2.2e-46 191.4 565 26.7
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 8.2e-46 189.5 227 48.0
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 7.0e-45 186.4 175 55.4
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 1.2e-44 185.7 286 41.6
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 1.8e-37 161.8 211 41.2
QL08p025705 Quercus lobata HOM05D000003 ORTHO05D050638 4.1e-29 134.0 128 55.5
QL01p010504 Quercus lobata HOM05D000005 ORTHO05D000012 2.0e-28 131.7 119 61.3
QL05p035325 Quercus lobata HOM05D000003 ORTHO05D012891 1.2e-25 122.5 90 72.2
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.8e-24 118.6 121 52.1
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 4.0e-24 117.5 127 57.5
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 6.8e-24 116.7 127 50.4
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 8.9e-24 116.3 155 47.7
QL01p017079 Quercus lobata HOM05D001657 ORTHO05D001557 9.8e-23 112.8 123 56.1
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 2.9e-22 111.3 184 40.8
QL93p0274_0003 Quercus lobata HOM05D000003 ORTHO05D012891 4.6e-20 104.0 122 50.8
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 1.7e-19 102.1 361 26.0
Psat6g225040 Pisum sativum HOM05D006967 ORTHO05D008692 8.6e-19 99.8 90 54.4
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 1.2e-17 95.9 262 26.3
QL01p030568 Quercus lobata HOM05D000003 ORTHO05D000006 6.2e-17 93.6 70 70.0
Migut.D00002 Erythranthe guttata HOM05D006967 ORTHO05D008692 3.1e-16 91.3 117 47.0
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 1.5e-15 89.0 255 25.1
PGSC0003DMG401016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 3.4e-15 87.8 267 30.0
QL03p022358 Quercus lobata HOM05D004408 ORTHO05D005486 9.8e-15 86.3 127 47.2
QL02p059301 Quercus lobata HOM05D006674 ORTHO05D012891 9.2e-13 79.7 109 41.3
QL09p023011 Quercus lobata HOM05D000003 ORTHO05D012891 4.6e-12 77.4 75 53.3
QL08p029882 Quercus lobata HOM05D000736 ORTHO05D007707 7.8e-12 76.6 58 72.4
QL09p018207 Quercus lobata HOM05D000003 ORTHO05D000004 1.3e-11 75.9 75 53.3
QL04p090358 Quercus lobata HOM05D000003 ORTHO05D000004 3.9e-11 74.3 100 47.0
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 1.9e-10 72.0 199 25.1
QL02p093012 Quercus lobata HOM05D000882 ORTHO05D001142 2.5e-10 71.6 73 52.1
Aqoxy4G01848 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 3.3e-10 71.2 101 40.6
QL01p006762 Quercus lobata HOM05D000003 ORTHO05D012891 2.1e-09 68.6 93 40.9
QL08p022680 Quercus lobata HOM05D000458 ORTHO05D004796 3.6e-09 67.8 104 40.4
QL06p035637 Quercus lobata HOM05D000141 ORTHO05D004993 4.7e-09 67.4 75 45.3
QL93p1865_0035 Quercus lobata HOM05D000003 ORTHO05D012891 8.1e-09 66.6 57 52.6
QL93p1865_0093 Quercus lobata HOM05D000003 ORTHO05D012891 8.1e-09 66.6 57 52.6
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 1.1e-08 66.2 47 59.6
QL07p015200 Quercus lobata HOM05D000003 ORTHO05D012891 1.4e-08 65.9 75 48.0
Thecc.02G329300 Theobroma cacao HOM05D013022 ORTHO05D007252 8.9e-08 63.2 86 39.5
QL04p013041 Quercus lobata HOM05D000003 ORTHO05D012891 2.0e-07 62.0 95 42.1
QL05p025121 Quercus lobata HOM05D003420 ORTHO05D003970 1.3e-06 59.3 54 51.9
HPP92_007178 Vanilla planifolia HOM05D006967 ORTHO05D008692 4.9e-06 57.4 89 31.5


User provided reference genes

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