Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 6.4e-305 1050.0 574 100.0
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 4.1e-195 685.3 568 69.5
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 6.0e-194 681.4 567 69.3
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 5.8e-189 664.8 567 68.1
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 1.1e-166 590.9 577 60.8
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 4.3e-160 568.9 561 60.2
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 1.2e-157 560.8 575 55.0
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 3.4e-157 559.3 570 58.9
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 5.9e-157 558.5 575 57.6
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 7.9e-154 548.1 569 58.7
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 1.8e-153 547.0 539 59.6
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 1.3e-151 540.8 567 58.0
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 1.3e-151 540.8 572 55.2
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 2.2e-151 540.0 565 59.1
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 1.4e-150 537.3 567 57.3
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 1.8e-150 537.0 573 55.7
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 5.3e-150 535.4 567 56.1
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.7e-149 531.6 533 59.1
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 7.7e-149 531.6 570 56.1
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.0e-148 531.2 544 60.3
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 1.0e-148 531.2 549 57.7
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.9e-148 529.6 570 56.0
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 3.8e-148 529.3 482 62.2
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 5.0e-148 528.9 565 55.9
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 6.5e-148 528.5 571 53.2
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 6.5e-148 528.5 564 55.1
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 3.2e-147 526.2 569 53.6
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 4.2e-147 525.8 578 55.0
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 7.2e-147 525.0 556 59.2
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 7.2e-147 525.0 576 58.3
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 9.4e-147 524.6 563 55.8
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.2e-146 524.2 545 59.6
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.6e-146 523.9 556 59.0
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 3.6e-146 522.7 573 55.0
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 3.0e-145 519.6 566 53.5
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 8.8e-145 518.1 575 55.7
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 2.0e-144 516.9 546 56.2
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 3.3e-144 516.2 577 53.2
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 1.3e-143 514.2 582 54.0
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.8e-143 513.1 577 53.2
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 4.8e-143 512.3 614 52.6
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.4e-142 510.8 582 54.8
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 9.1e-142 508.1 572 57.7
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 2.2e-140 503.4 563 55.6
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.2e-140 503.4 567 52.6
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 3.8e-140 502.7 567 52.0
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 6.5e-140 501.9 543 57.3
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.5e-139 498.8 571 53.8
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 1.6e-138 497.3 562 55.5
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.8e-137 493.8 568 55.1
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 9.7e-136 488.0 539 51.4
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 3.7e-135 486.1 565 58.1
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 6.3e-135 485.3 564 58.2
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 1.7e-132 477.2 571 49.9
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 6.5e-132 475.3 568 52.8
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 1.5e-131 474.2 550 53.8
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 3.0e-129 466.5 601 48.6
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.7e-127 460.7 563 56.7
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 2.8e-127 459.9 493 53.5
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 2.7e-125 453.4 564 53.0
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 2.7e-125 453.4 583 50.6
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 3.5e-125 453.0 582 52.9
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 1.0e-124 451.4 587 49.4
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 8.5e-124 448.4 583 51.3
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 2.5e-123 446.8 583 48.5
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 4.2e-123 446.0 570 51.1
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 3.6e-122 443.0 583 50.1
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 8.0e-122 441.8 567 47.1
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 1.4e-121 441.0 586 50.9
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 8.8e-121 438.3 590 47.5
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 2.0e-120 437.2 588 50.3
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 9.8e-120 434.9 605 47.1
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 1.7e-119 434.1 567 47.6
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 2.2e-119 433.7 602 47.2
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 2.8e-119 433.3 568 44.9
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 4.8e-119 432.6 559 47.0
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.8e-118 430.6 567 46.6
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 4.1e-118 429.5 570 45.1
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 4.1e-118 429.5 574 46.0
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 5.4e-118 429.1 570 46.1
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 7.0e-118 428.7 540 44.6
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 2.7e-117 426.8 568 47.0
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 2.7e-117 426.8 574 49.0
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 1.0e-116 424.9 574 46.9
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 1.0e-116 424.9 571 44.7
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 1.3e-116 424.5 583 47.7
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 2.3e-116 423.7 564 49.1
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.9e-116 423.3 457 51.9
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 5.0e-116 422.5 559 47.8
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 1.1e-115 421.4 568 44.4
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.5e-115 421.0 568 47.7
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 1.5e-115 421.0 564 47.2
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 2.8e-114 416.8 578 47.4
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 3.6e-114 416.4 568 49.1
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 3.6e-114 416.4 524 54.4
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 3.0e-113 413.3 584 45.5
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 7.5e-112 408.7 602 47.5
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.7e-111 407.5 567 43.9
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 1.8e-105 387.5 575 44.2
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 7.5e-104 382.1 392 58.9
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 1.1e-102 378.3 576 42.4
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 9.2e-102 375.2 304 62.5
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 2.1e-98 364.0 602 42.2
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 2.0e-96 357.5 550 47.8
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 4.6e-93 346.3 560 41.6
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 3.3e-91 340.1 556 40.5
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 1.6e-90 337.8 577 44.4
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 4.7e-90 336.3 585 41.9
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 1.4e-89 334.7 568 41.9
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 2.6e-88 330.5 480 44.0
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.6e-88 330.5 664 38.1
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.3e-87 328.2 498 41.0
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 4.1e-86 323.2 731 35.0
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 4.0e-81 306.6 454 44.5
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 1.3e-79 301.6 553 39.8
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.9e-68 263.5 578 33.9
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 2.0e-64 251.1 554 33.8
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.7e-63 248.1 272 49.3
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 3.8e-63 246.9 502 38.6
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 1.0e-60 238.8 647 31.7
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 1.1e-59 235.3 430 43.5
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 2.1e-58 231.1 210 53.3
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 3.2e-54 217.2 694 28.5
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 1.0e-52 212.2 644 28.9
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 6.7e-52 209.5 559 31.5
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.0e-48 198.0 287 37.3
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.0e-44 184.1 179 52.0
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 7.2e-38 162.9 165 62.4
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 6.7e-36 156.4 186 54.8
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 1.5e-35 155.2 289 34.6
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 5.7e-35 153.3 561 28.3
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 3.1e-33 147.5 280 32.1
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 6.9e-33 146.4 136 54.4
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.3e-28 131.3 496 24.2
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 2.4e-25 121.3 141 51.8
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 5.5e-22 110.2 76 68.4
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 5.5e-22 110.2 76 68.4
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 4.8e-18 97.1 166 33.7
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 6.3e-18 96.7 235 28.9
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 9.1e-17 92.8 128 46.9
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 9.1e-09 66.2 79 43.0
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 3.5e-08 64.3 110 33.6
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 2.5e-06 58.2 119 38.7


User provided reference genes

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