Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 1.2e-89 333.2 168 100.0
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.1e-87 326.6 168 97.6
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.6e-86 322.8 168 94.6
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 3.5e-86 321.6 167 95.8
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 5.1e-85 317.8 167 94.0
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 5.1e-85 317.8 167 94.0
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 8.7e-85 317.0 168 94.0
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 8.7e-85 317.0 168 94.0
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.1e-84 316.6 168 92.3
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 2.5e-84 315.5 168 93.5
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 3.3e-84 315.1 167 93.4
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 5.6e-84 314.3 167 92.8
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 7.3e-84 313.9 168 91.7
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 2.1e-83 312.4 168 91.1
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 2.1e-83 312.4 168 91.7
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 2.8e-83 312.0 168 90.5
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 2.8e-83 312.0 167 92.2
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 2.8e-83 312.0 167 92.2
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 3.6e-83 311.6 168 91.1
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.6e-83 311.6 168 91.1
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.6e-83 311.6 168 91.1
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.6e-83 311.6 168 93.5
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 6.2e-83 310.8 168 89.9
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.2e-83 310.8 168 91.1
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 8.1e-83 310.5 167 91.6
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 8.1e-83 310.5 166 91.0
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 1.8e-82 309.3 167 91.0
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.8e-82 309.3 166 91.6
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.4e-82 308.9 167 91.0
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 2.4e-82 308.9 167 91.0
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 3.1e-82 308.5 167 91.6
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 6.9e-82 307.4 167 91.0
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 9.0e-82 307.0 168 88.7
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 9.0e-82 307.0 168 89.3
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 9.0e-82 307.0 167 89.8
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 9.0e-82 307.0 167 90.4
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 2.0e-81 305.8 167 88.0
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 2.6e-81 305.4 168 88.7
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 4.5e-81 304.7 168 89.3
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 5.8e-81 304.3 167 89.8
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 7.6e-81 303.9 168 89.3
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.2e-80 302.4 168 87.5
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 2.2e-80 302.4 167 88.0
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.2e-80 302.4 167 89.2
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.9e-80 302.0 167 89.2
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 3.8e-80 301.6 168 86.9
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 3.8e-80 301.6 168 87.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 6.4e-80 300.8 168 86.9
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 8.4e-80 300.4 167 86.2
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 8.4e-80 300.4 166 88.0
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 8.4e-80 300.4 167 88.0
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-79 300.1 185 82.7
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-79 300.1 185 82.7
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 1.4e-79 299.7 166 88.0
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.9e-79 299.3 185 82.2
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.9e-79 299.3 168 86.9
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 2.4e-79 298.9 166 89.8
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 3.2e-79 298.5 168 86.9
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 3.2e-79 298.5 184 83.2
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 5.5e-79 297.7 166 89.2
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 5.5e-79 297.7 167 86.8
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 7.1e-79 297.4 167 88.0
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 2.7e-78 295.4 168 86.9
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 4.6e-78 294.7 167 88.0
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.9e-78 293.9 167 86.2
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 7.9e-78 293.9 167 86.2
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.0e-77 293.5 167 85.6
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 5.1e-77 291.2 167 85.6
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 8.7e-77 290.4 167 85.6
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 8.7e-77 290.4 149 95.3
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 1.1e-76 290.0 167 83.8
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.1e-76 290.0 180 79.4
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.1e-76 290.0 167 88.0
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.5e-76 289.7 167 85.0
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.9e-76 289.3 167 85.0
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.9e-76 289.3 190 78.4
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 4.3e-76 288.1 166 87.3
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 5.6e-76 287.7 224 68.8
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 5.6e-76 287.7 168 82.1
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 1.3e-75 286.6 167 83.8
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.1e-75 285.8 167 84.4
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 2.1e-75 285.8 205 72.2
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 2.1e-75 285.8 167 85.6
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 2.8e-75 285.4 194 75.3
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 2.8e-75 285.4 149 93.3
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 8.1e-75 283.9 167 85.0
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.4e-74 283.1 149 91.9
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.8e-74 282.7 168 80.4
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.4e-74 282.3 167 82.6
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.1e-74 282.0 167 82.0
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 4.0e-74 281.6 149 92.6
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 6.9e-74 280.8 143 95.8
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 1.5e-73 279.6 168 79.8
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.5e-73 279.6 148 91.2
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 2.6e-73 278.9 149 89.3
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.4e-73 278.5 213 70.0
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 4.5e-73 278.1 168 77.4
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 5.8e-73 277.7 167 82.6
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 1.3e-72 276.6 167 82.0
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.9e-72 275.4 157 87.9
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 2.5e-71 272.3 157 87.3
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 3.2e-71 271.9 168 77.4
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 5.5e-71 271.2 166 81.3
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 1.2e-70 270.0 145 90.3
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 3.5e-70 268.5 163 81.0
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 4.6e-70 268.1 154 85.7
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 6.0e-70 267.7 147 87.8
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 5.1e-69 264.6 168 75.0
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 8.7e-69 263.8 152 86.2
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 8.7e-69 263.8 169 79.3
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.1e-68 263.5 167 78.4
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.9e-68 262.7 177 78.0
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 9.6e-68 260.4 238 60.9
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 2.4e-66 255.8 149 83.9
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 6.9e-66 254.2 169 75.1
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 1.1e-63 246.9 126 92.1
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 3.2e-63 245.4 124 94.4
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 1.2e-62 243.4 149 79.9
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-62 243.4 156 80.8
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 1.2e-62 243.4 169 73.4
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 2.3e-61 239.2 168 76.2
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 5.1e-61 238.0 160 75.6
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 2.5e-60 235.7 166 75.9
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 1.3e-59 233.4 152 77.0
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 2.2e-59 232.6 123 87.8
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 1.7e-56 223.0 168 69.6
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.9e-56 222.2 132 83.3
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 3.8e-56 221.9 166 72.3
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 8.5e-56 220.7 122 91.0
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 2.5e-55 219.2 155 71.0
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 3.2e-55 218.8 189 59.8
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 1.2e-54 216.9 121 90.9
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.6e-54 216.5 121 90.1
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.6e-54 216.5 121 90.1
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 2.1e-54 216.1 122 87.7
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 3.6e-54 215.3 121 89.3
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 8.8e-53 210.7 123 87.0
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 5.7e-52 208.0 155 72.3
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 2.2e-51 206.1 123 86.2
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 3.7e-51 205.3 141 75.9
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 5.3e-50 201.4 158 72.2
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 5.9e-49 198.0 134 72.4
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.3e-43 180.3 106 87.7
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 6.3e-43 177.9 90 88.9
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-40 170.6 90 92.2
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.2e-39 164.5 96 90.6
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 5.3e-34 148.3 83 91.6
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.1e-31 140.6 103 67.0
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 2.0e-28 129.8 87 73.6
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.3e-27 127.1 99 65.7
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.8e-27 125.2 82 76.8
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 4.8e-27 125.2 73 90.4
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 2.4e-26 122.9 103 65.0
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.7e-24 116.7 78 70.5
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.7e-24 116.7 75 77.3
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.2e-22 110.5 74 74.3
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.7e-19 100.1 64 78.1
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.4e-18 95.1 65 76.9
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 3.5e-17 92.4 153 37.3
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 2.3e-16 89.7 130 40.0
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 1.9e-15 86.7 49 91.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 1.9e-15 86.7 49 91.8
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.6e-14 82.4 44 81.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.4e-13 80.5 108 50.9
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 2.0e-12 76.6 157 36.9
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.4e-11 71.6 38 81.6


User provided reference genes

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