Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 2.3e-309 1064.7 527 100.0
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 1.1e-303 1045.8 526 98.9
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 3.9e-301 1037.3 527 97.9
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 7.4e-300 1033.1 525 97.9
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 6.3e-299 1030.0 527 97.2
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 1.8e-298 1028.5 527 97.3
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 1.8e-298 1028.5 527 97.3
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 1.8e-298 1028.5 527 97.3
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 2.4e-298 1028.1 527 97.5
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 5.3e-298 1026.9 527 97.5
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 5.3e-298 1026.9 527 97.5
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 1.3e-296 1022.3 526 97.1
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 6.5e-296 1020.0 527 97.0
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 1.2e-292 1009.2 527 95.4
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 2.0e-292 1008.4 527 95.8
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 2.0e-292 1008.4 527 95.8
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 2.0e-292 1008.4 527 95.8
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 2.0e-292 1008.4 527 95.8
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.0e-292 1008.4 527 95.8
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 9.7e-292 1006.1 524 96.2
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 2.2e-291 1005.0 524 95.8
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.7e-283 977.6 498 97.8
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.7e-283 977.6 498 97.8
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.7e-283 977.6 498 97.8
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 2.0e-281 971.8 498 97.2
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 3.0e-277 958.0 498 96.4
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 9.8e-276 953.0 527 91.8
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 3.7e-275 951.0 498 95.6
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 5.0e-272 940.6 498 95.4
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 1.8e-269 932.2 516 92.4
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 9.8e-268 926.4 527 89.9
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 2.1e-262 908.7 525 88.0
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.9e-258 895.6 456 97.8
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.2e-258 894.8 508 90.6
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.1e-257 892.1 503 91.1
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.7e-257 891.7 527 85.6
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 5.1e-248 860.9 498 88.6
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 2.4e-245 852.0 488 90.0
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.2e-244 849.7 479 89.8
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 2.4e-242 842.0 522 84.3
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 9.9e-236 820.1 456 91.7
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 2.5e-231 805.4 421 96.4
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 9.6e-231 803.5 420 96.4
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 9.0e-229 797.0 454 90.5
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 2.6e-228 795.4 488 85.2
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 1.3e-227 793.1 451 90.2
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 1.2e-212 743.4 391 95.4
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 2.3e-208 729.2 461 82.4
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 3.3e-199 698.7 354 97.5
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.7e-192 674.5 456 78.1
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 5.9e-188 661.4 460 77.4
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 2.0e-180 636.3 317 97.8
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 4.5e-172 608.6 400 80.0
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 1.3e-163 580.5 297 99.0
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.9e-163 579.3 354 83.1
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.1e-161 573.2 522 62.1
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 4.7e-153 545.4 284 94.7
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 2.3e-152 543.1 317 86.8
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.2e-149 532.7 284 93.3
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 3.3e-146 522.7 365 75.9
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 8.6e-139 498.0 253 96.8
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 4.7e-137 492.3 253 96.0
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 8.1e-137 491.5 659 47.8
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 4.0e-136 489.2 253 95.7
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 7.1e-133 478.4 265 92.5
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 1.3e-131 474.2 250 93.6
unitig_87.g28001 Utricularia gibba HOM05D004537 ORTHO05D005492 4.7e-129 465.7 242 97.1
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 1.2e-127 461.1 527 53.3
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 3.4e-127 459.5 274 84.7
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 3.4e-127 459.5 274 84.7
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 3.6e-121 439.5 307 75.6
PSO384G3370 Papaver somniferum HOM05D004537 ORTHO05D005492 3.2e-117 426.4 227 96.0
RcHm_v2.0_MTg0498791 Rosa chinensis HOM05D004537 ORTHO05D005492 2.7e-116 423.3 235 92.3
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 3.1e-112 409.8 222 95.5
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 9.3e-109 398.3 312 71.8
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 7.9e-108 395.2 235 84.7
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 3.1e-104 383.3 432 50.9
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.2e-102 377.1 354 61.3
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.4e-102 375.2 188 96.8
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.4e-102 375.2 188 96.8
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 8.4e-102 375.2 188 96.8
BraSC48t46325Z Brassica rapa HOM05D004537 ORTHO05D005492 2.1e-100 370.5 204 93.1
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 3.3e-98 363.2 188 94.1
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 7.4e-98 362.1 427 54.1
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 1.6e-97 360.9 188 93.6
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 2.0e-95 354.0 262 77.5
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.6e-89 334.3 504 43.7
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.7e-86 324.3 328 56.1
TPR.G4012 Trifolium pratense HOM05D004537 ORTHO05D005492 3.8e-86 323.2 161 100.0
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.6e-84 317.8 321 57.0
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 1.4e-80 304.7 197 78.7
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 4.2e-77 293.1 373 41.6
Solyc02g021770.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.8e-75 287.7 159 91.2
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.5e-70 269.2 434 44.9
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-58 231.9 183 68.9
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 2.0e-58 231.1 204 64.2
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 3.4e-58 230.3 234 59.4
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 4.4e-58 229.9 118 97.5
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 7.5e-58 229.2 244 55.7
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.7e-57 228.0 128 87.5
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 5.4e-56 223.0 283 49.5
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 5.0e-54 216.5 138 82.6
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 6.5e-54 216.1 175 65.7
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.1e-53 215.3 134 73.9
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.2e-53 213.8 148 77.7
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 1.6e-52 211.5 137 81.8
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 4.4e-50 203.4 104 93.3
SHI27477 Sapria himalayana HOM05D004537 ORTHO05D005492 7.5e-50 202.6 227 52.9
Ah.10g027900 Amaranthus hybridus HOM05D004537 ORTHO05D005492 8.3e-49 199.1 105 90.5
Ah.10g028280 Amaranthus hybridus HOM05D004537 ORTHO05D005492 8.3e-49 199.1 105 90.5
HPP92_007209 Vanilla planifolia HOM05D004537 ORTHO05D005492 1.1e-48 198.7 100 97.0
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 1.1e-45 188.7 94 95.7
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 1.6e-44 184.9 153 68.6
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 1.6e-44 184.9 93 94.6
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 2.1e-44 184.5 91 96.7
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 1.0e-43 182.2 109 80.7
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 8.9e-43 179.1 90 94.4
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.2e-42 178.7 165 61.2
Medtr0024s0110 Medicago truncatula HOM05D004537 ORTHO05D005492 1.2e-42 178.7 197 52.8
Eucgr.E01613 Eucalyptus grandis HOM05D004537 ORTHO05D005492 3.4e-42 177.2 95 95.8
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 5.4e-40 169.9 91 94.5
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.7e-39 167.5 156 60.9
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 3.5e-39 167.2 98 83.7
Nitab4.5_0000074g0200 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.5e-39 167.2 104 78.8
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 3.3e-37 160.6 81 93.8
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 2.8e-36 157.5 85 90.6
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 8.9e-35 152.5 92 81.5
Nitab4.5_0000161g0030 Nicotiana tabacum HOM05D008163 ORTHO05D010305 2.0e-34 151.4 124 65.3
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 2.9e-33 147.5 106 72.6
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 3.7e-33 147.1 89 82.0
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 6.4e-33 146.4 163 57.7
Lalb_Chr20g0115011 Lupinus albus HOM05D004537 ORTHO05D005492 5.4e-32 143.3 112 71.4
SHI20133 Sapria himalayana HOM05D004537 ORTHO05D005492 2.5e-29 134.4 80 81.2
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 9.5e-29 132.5 129 60.5
Lalb_Chr00c21g0405811 Lupinus albus HOM05D004537 ORTHO05D005492 1.7e-25 121.7 56 100.0
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 9.2e-24 115.9 73 79.5
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 3.5e-23 114.0 107 58.9
Solyc08g029290.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.6e-23 113.6 76 75.0
Nitab4.5_0001234g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.0e-22 112.5 92 72.8
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 2.5e-21 107.8 64 81.2
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 3.6e-20 104.0 68 79.4
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 5.2e-19 100.1 53 86.8
C04p32420 Brassica napus HOM05D004537 ORTHO05D005492 3.4e-18 97.4 70 74.3
EL10Ac5g12760 Beta vulgaris HOM05D004537 ORTHO05D005492 1.9e-16 91.7 46 91.3
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 3.2e-16 90.9 46 95.7
TPR.G39033 Trifolium pratense HOM05D004537 ORTHO05D005492 4.6e-15 87.0 50 84.0
Nitab4.5_0001127g0350 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.7e-14 85.1 42 92.9
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 5.1e-14 83.6 50 80.0
Nitab4.5_0002322g0200 Nicotiana tabacum HOM05D004537 ORTHO05D015169 1.5e-13 82.0 41 95.1
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 1.2e-12 79.0 48 83.3
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.1e-11 75.9 50 78.0
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.1e-11 74.3 36 91.7
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 4.0e-11 73.9 46 78.3
ATR1125G006 Amborella trichopoda HOM05D004537 ORTHO05D005492 4.4e-10 70.5 33 93.9
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.3e-09 68.9 34 94.1
BolC4t24790H Brassica oleracea HOM05D004537 ORTHO05D005492 1.7e-09 68.6 35 88.6
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 3.8e-09 67.4 56 66.1
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 9.3e-08 62.8 50 64.0


User provided reference genes

Program Settings