Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p056998 Quercus lobata HOM05D005323 ORTHO05D006820 3.8e-243 844.3 411 100.0
CiPaw.02G099700 Carya illinoinensis HOM05D005323 ORTHO05D006820 1.1e-85 321.2 208 76.4
Dinv18320 Davidia involucrata HOM05D005323 ORTHO05D006820 1.1e-83 314.7 208 73.6
Cpa.g.sc17.20 Carica papaya HOM05D005323 ORTHO05D006820 1.8e-83 313.9 194 77.3
CSS0020323 Camellia sinensis var. sinensis HOM05D005323 ORTHO05D006820 8.9e-83 311.6 208 72.6
EL10Ac4g07922 Beta vulgaris HOM05D005323 ORTHO05D006820 4.4e-82 309.3 208 71.6
Sc16g0006150 Simmondsia chinensis HOM05D005323 ORTHO05D006820 7.6e-82 308.5 210 71.4
Eucgr.L00010 Eucalyptus grandis HOM05D005323 ORTHO05D006820 1.3e-81 307.8 208 72.6
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 2.2e-81 307.0 208 71.6
AUR62031624 Chenopodium quinoa HOM05D005323 ORTHO05D006820 2.9e-81 306.6 208 72.1
Nitab4.5_0000285g0060 Nicotiana tabacum HOM05D005323 ORTHO05D006820 2.9e-81 306.6 201 73.1
Nitab4.5_0002913g0040 Nicotiana tabacum HOM05D005323 ORTHO05D006820 2.9e-81 306.6 209 71.3
Glyma.16G037700 Glycine max HOM05D005323 ORTHO05D006820 3.7e-81 306.2 208 71.6
VMungo1383G1964 Vigna mungo HOM05D005323 ORTHO05D006820 4.9e-81 305.8 208 71.2
Actinidia27124 Actinidia chinensis HOM05D005323 ORTHO05D006820 6.4e-81 305.4 208 71.2
arahy.Tifrunner.gnm1.ann1.157ZG7 Arachis hypogaea HOM05D005323 ORTHO05D006820 8.4e-81 305.1 208 71.6
arahy.Tifrunner.gnm1.ann1.353MUE Arachis hypogaea HOM05D005323 ORTHO05D006820 8.4e-81 305.1 208 71.6
Lj1g0017737 Lotus japonicus HOM05D005323 ORTHO05D006820 1.9e-80 303.9 208 71.6
Manes.01G016900 Manihot esculenta HOM05D005323 ORTHO05D006820 3.2e-80 303.1 210 71.4
PGR042G1263 Punica granatum HOM05D005323 ORTHO05D006820 3.2e-80 303.1 210 71.4
Sopen03g013260 Solanum pennellii HOM05D005323 ORTHO05D006820 3.2e-80 303.1 201 72.6
PGSC0003DMG400026328 Solanum tuberosum HOM05D005323 ORTHO05D006820 3.2e-80 303.1 201 72.6
Lalb_Chr14g0364721 Lupinus albus HOM05D005323 ORTHO05D006820 1.6e-79 300.8 208 70.7
Rhsim09G0008200 Rhododendron simsii HOM05D005323 ORTHO05D006820 6.0e-79 298.9 208 69.2
Psat0s4033g0160 Pisum sativum HOM05D005323 ORTHO05D006820 7.8e-79 298.5 196 74.0
A07p24790 Brassica napus HOM05D005323 ORTHO05D006820 1.7e-78 297.4 210 68.6
BraA07t30124Z Brassica rapa HOM05D005323 ORTHO05D006820 1.7e-78 297.4 210 68.6
BcaC08g45003 Brassica carinata HOM05D005323 ORTHO05D006820 2.3e-78 297.0 210 68.6
C06p26380 Brassica napus HOM05D005323 ORTHO05D006820 2.3e-78 297.0 210 68.6
Sp5g03440 Schrenkiella parvula HOM05D005323 ORTHO05D006820 2.3e-78 297.0 210 69.5
ATR0743G149 Amborella trichopoda HOM05D005323 ORTHO05D006820 8.6e-78 295.0 208 67.8
BcaB02g07449 Brassica carinata HOM05D005323 ORTHO05D006820 1.1e-77 294.7 208 68.3
ECA240G0264 Erigeron canadensis HOM05D005323 ORTHO05D006820 4.3e-77 292.7 210 68.6
HanXRQChr01g0001231 Helianthus annuus HOM05D005323 ORTHO05D006820 4.3e-77 292.7 210 69.0
Lj6P177T10 Lonicera japonica HOM05D005323 ORTHO05D006820 5.6e-77 292.4 208 70.2
QL10p057057 Quercus lobata HOM05D005323 ORTHO05D006820 5.6e-77 292.4 208 71.2
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 5.6e-77 292.4 207 67.1
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 3.6e-76 289.7 210 67.1
HPP92_028318 Vanilla planifolia HOM05D005323 ORTHO05D006820 3.6e-76 289.7 210 67.1
Cc11_g02260 Coffea canephora HOM05D005323 ORTHO05D006820 1.8e-75 287.3 208 68.3
Cfa015676 Carpinus fangiana HOM05D005323 ORTHO05D006820 2.4e-75 287.0 208 70.2
Haze_00854 Corylus avellana HOM05D005323 ORTHO05D006820 2.4e-75 287.0 208 70.2
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 4.0e-75 286.2 207 65.7
Sed0013916 Sechium edule HOM05D005323 ORTHO05D006820 4.0e-75 286.2 208 68.8
MELO3C011851.2 Cucumis melo HOM05D005323 ORTHO05D006820 6.8e-75 285.4 208 69.2
PSO675G7169 Papaver somniferum HOM05D005323 ORTHO05D006820 8.9e-75 285.0 207 66.2
CsaV3_5G030120 Cucumis sativus L. HOM05D005323 ORTHO05D006820 2.0e-74 283.9 208 68.8
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 3.4e-74 283.1 192 72.9
Dinv33215 Davidia involucrata HOM05D005323 ORTHO05D006820 4.4e-74 282.7 210 67.1
Phvul.001G114300 Phaseolus vulgaris HOM05D005323 ORTHO05D006820 6.4e-73 278.9 208 67.3
Lsat_1_v5_gn_0_9241 Lactuca sativa HOM05D005323 ORTHO05D006820 4.2e-72 276.2 210 65.7
Psat6g090360 Pisum sativum HOM05D005323 ORTHO05D006820 4.2e-72 276.2 191 70.7
COL.COLO4_38123 Corchorus olitorius HOM05D005323 ORTHO05D006820 1.2e-71 274.6 208 66.8
Medtr7g086360 Medicago truncatula HOM05D005323 ORTHO05D006820 1.2e-71 274.6 208 65.4
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 1.7e-70 270.8 185 71.9
Sabra19G0108600 Salix brachista HOM05D005323 ORTHO05D006820 5.1e-70 269.2 210 64.3
Pp3c6_28640 Physcomitrium patens HOM05D005323 ORTHO05D006820 8.7e-70 268.5 207 60.9
DCAR_005453 Daucus carota HOM05D005323 ORTHO05D006820 1.1e-69 268.1 210 63.3
Ciclev10020927m.g Citrus clementina HOM05D005323 ORTHO05D006820 1.5e-69 267.7 208 65.4
THA.LOC104804129 Tarenaya hassleriana HOM05D005323 ORTHO05D006820 1.5e-69 267.7 210 64.8
Thecc.04G163800 Theobroma cacao HOM05D005323 ORTHO05D006820 1.5e-69 267.7 208 64.9
Gohir.A10G144900 Gossypium hirsutum HOM05D005323 ORTHO05D006820 1.9e-69 267.3 208 65.4
Gohir.D10G122100 Gossypium hirsutum HOM05D005323 ORTHO05D006820 1.9e-69 267.3 208 65.4
Gorai.011G134300 Gossypium raimondii HOM05D005323 ORTHO05D006820 1.9e-69 267.3 208 65.4
Potri.019G096900 Populus trichocarpa HOM05D005323 ORTHO05D006820 2.5e-69 266.9 210 63.3
AagrBONN_evm.TU.Sc2ySwM_228.3872 Anthoceros agrestis HOM05D005323 ORTHO05D006820 3.3e-69 266.5 207 63.8
TWI15G0703 Tripterygium wilfordii HOM05D005323 ORTHO05D006820 4.3e-69 266.2 207 65.2
Duzib212G0476 Durio zibethinus HOM05D005323 ORTHO05D006820 5.6e-69 265.8 208 65.4
CANSAT56G3038 Cannabis sativa HOM05D005323 ORTHO05D006820 1.3e-68 264.6 207 63.8
AL4G42640 Arabidopsis lyrata HOM05D005323 ORTHO05D006820 2.8e-68 263.5 208 62.0
Duzib151G0361 Durio zibethinus HOM05D005323 ORTHO05D006820 2.8e-68 263.5 208 64.4
Glyma.19G114900 Glycine max HOM05D005323 ORTHO05D006820 2.8e-68 263.5 208 63.5
Pp3c5_3050 Physcomitrium patens HOM05D005323 ORTHO05D006820 2.8e-68 263.5 205 59.5
TPR.G17865 Trifolium pratense HOM05D005323 ORTHO05D006820 4.8e-68 262.7 207 62.8
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 6.2e-68 262.3 208 64.9
AT2G43770 Arabidopsis thaliana HOM05D005323 ORTHO05D006820 8.1e-68 261.9 208 61.5
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 2.4e-67 260.4 208 61.5
Carub.0004s2630 Capsella rubella HOM05D005323 ORTHO05D006820 3.1e-67 260.0 208 61.1
TWI63G1046 Tripterygium wilfordii HOM05D005323 ORTHO05D006820 6.9e-67 258.8 207 62.8
Sp4g25840 Schrenkiella parvula HOM05D005323 ORTHO05D006820 9.0e-67 258.5 210 61.4
FAN07G1750 Fragaria x ananassa HOM05D005323 ORTHO05D006820 1.5e-66 257.7 207 63.3
FAN17G0326 Fragaria x ananassa HOM05D005323 ORTHO05D006820 1.5e-66 257.7 207 62.8
RcHm_v2.0_Chr4g0405641 Rosa chinensis HOM05D005323 ORTHO05D006820 1.5e-66 257.7 207 63.3
FvH4_4g10290 Fragaria vesca HOM05D005323 ORTHO05D006820 2.0e-66 257.3 200 65.0
FAN12G3690 Fragaria x ananassa HOM05D005323 ORTHO05D006820 2.0e-66 257.3 200 65.0
FAN12G3871 Fragaria x ananassa HOM05D005323 ORTHO05D006820 2.0e-66 257.3 200 65.0
Prupe.1G071000 Prunus persica HOM05D005323 ORTHO05D006820 4.4e-66 256.1 207 62.3
FAN22G1090 Fragaria x ananassa HOM05D005323 ORTHO05D006820 5.8e-66 255.8 207 62.8
MD16G1243600 Malus domestica HOM05D005323 ORTHO05D006820 5.8e-66 255.8 207 62.3
Aqoxy4G03253 Aquilegia oxysepala HOM05D005323 ORTHO05D006820 7.6e-66 255.4 207 60.4
Ca_08300_v3 Cicer arietinum L. HOM05D005323 ORTHO05D006820 9.9e-66 255.0 208 62.0
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 2.2e-65 253.8 208 61.1
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 3.8e-65 253.1 208 60.6
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 8.4e-65 251.9 208 60.1
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 8.4e-65 251.9 208 60.1
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 8.4e-65 251.9 208 60.1
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 8.4e-65 251.9 207 60.4
Thhalv10006086m.g Eutrema salsugineum HOM05D005323 ORTHO05D006820 3.2e-64 250.0 210 61.0
Migut.N03056 Erythranthe guttata HOM05D005323 ORTHO05D006820 9.3e-64 248.4 203 60.1
Migut.O00692 Erythranthe guttata HOM05D005323 ORTHO05D006820 9.3e-64 248.4 203 60.1
SGA_v2.0_scaffold19G08852 Striga asiatica HOM05D005323 ORTHO05D006820 4.6e-63 246.1 208 57.2
Hma1.2p1_1156F.1_g262335 Hydrangea macrophylla HOM05D005323 ORTHO05D006820 6.0e-63 245.7 165 72.1
Hma1.2p1_1156F.1_g262340 Hydrangea macrophylla HOM05D005323 ORTHO05D006820 6.0e-63 245.7 165 72.1
CiPaw.01G169200 Carya illinoinensis HOM05D005323 ORTHO05D006820 3.0e-62 243.4 174 69.5
Zm00001eb389600 Zea mays HOM05D005323 ORTHO05D006820 3.0e-62 243.4 207 57.5
Os06g0653800 Oryza sativa ssp. japonica HOM05D005323 ORTHO05D006820 5.1e-62 242.7 207 58.0
Sabra19G0107500 Salix brachista HOM05D005323 ORTHO05D006820 6.6e-62 242.3 194 61.9
AUR62020514 Chenopodium quinoa HOM05D005323 ORTHO05D006820 8.7e-62 241.9 178 66.9
Gorai.005G008900 Gossypium raimondii HOM05D005323 ORTHO05D006820 8.7e-62 241.9 204 61.8
Zm00001eb274960 Zea mays HOM05D005323 ORTHO05D006820 3.3e-61 240.0 207 57.0
Oeu015708.1 Olea europaea HOM05D005323 ORTHO05D006820 2.1e-60 237.3 208 57.7
TAR362G1141 Trochodendron aralioides HOM05D005323 ORTHO05D006820 2.1e-60 237.3 208 59.1
Thhalv10001531m.g Eutrema salsugineum HOM05D005323 ORTHO05D006820 3.1e-59 233.4 208 55.8
Atru.chr4.1467 Acer truncatum HOM05D005323 ORTHO05D006820 1.2e-58 231.5 208 58.7
Atru.chr4.1493 Acer truncatum HOM05D005323 ORTHO05D006820 1.2e-58 231.5 208 58.7
MSTRG.22040 Avicennia marina HOM05D005323 ORTHO05D006820 9.9e-58 228.4 207 57.0
SalBow6G4087 Salvia bowleyana HOM05D005323 ORTHO05D006820 1.4e-56 224.6 203 56.2
Oeu050326.1 Olea europaea HOM05D005323 ORTHO05D006820 3.2e-56 223.4 207 55.6
CARHR138940 Cardamine hirsuta HOM05D005323 ORTHO05D006820 4.6e-55 219.5 210 53.8
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 7.9e-55 218.8 171 65.5
unitig_22.g5706 Utricularia gibba HOM05D005323 ORTHO05D006820 5.6e-53 212.6 200 54.0
Cre06.g255400 Chlamydomonas reinhardtii HOM05D005323 ORTHO05D006820 2.2e-49 200.7 212 46.2
CBR_g4366 Chara braunii HOM05D005323 ORTHO05D006820 4.9e-49 199.5 176 56.8
MCO10G164 Micromonas commoda HOM05D005323 ORTHO05D006820 2.2e-41 174.1 199 43.2
Psat4g031880 Pisum sativum HOM05D005323 ORTHO05D006820 4.1e-35 153.3 146 56.2
Solyc03g059100.3 Solanum lycopersicum HOM05D005323 ORTHO05D006820 6.9e-35 152.5 125 64.0
Lj6C181T4 Lonicera japonica HOM05D005323 ORTHO05D006820 2.7e-31 140.6 75 82.7
PRCOL_00003404 Prasinoderma coloniale HOM05D005323 ORTHO05D006820 1.1e-29 135.2 210 34.3
GSVIVG01038180001 Vitis vinifera HOM05D005323 ORTHO05D006820 2.0e-26 124.4 67 88.1
C04p70770 Brassica napus HOM05D000037 ORTHO05D000419 3.4e-26 123.6 72 76.4
BcaC02g07149 Brassica carinata HOM05D000037 ORTHO05D091408 1.0e-25 122.1 67 77.6
Lj6A185T28 Lonicera japonica HOM05D005323 ORTHO05D006820 1.3e-25 121.7 194 39.7
Potri.013G128001 Populus trichocarpa HOM05D005323 ORTHO05D006820 6.1e-23 112.8 109 57.8
Haze_27161 Corylus avellana HOM05D005323 ORTHO05D006820 5.1e-22 109.8 200 33.0
Cfa023113 Carpinus fangiana HOM05D005323 ORTHO05D017328 1.3e-20 105.1 187 30.5
Lj6A188T23 Lonicera japonica HOM05D005323 ORTHO05D006820 2.0e-18 97.8 56 80.4
Psat2g031000 Pisum sativum HOM05D003141 ORTHO05D003633 1.5e-16 91.7 52 80.8
SHI18816 Sapria himalayana HOM05D005323 ORTHO05D006820 5.3e-11 73.2 82 48.8
SHI06778 Sapria himalayana HOM05D005323 ORTHO05D006820 1.6e-10 71.6 85 47.1
DCAR_011058 Daucus carota HOM05D005323 ORTHO05D033416 2.0e-10 71.2 50 66.0
C04p32940 Brassica napus HOM05D005323 ORTHO05D033416 5.9e-10 69.7 42 76.2
BolC4t24857H Brassica oleracea HOM05D005323 ORTHO05D033416 5.9e-10 69.7 42 76.2
Nn4g26096 Nelumbo nucifera HOM05D002999 ORTHO05D003137 1.1e-08 65.5 218 23.9
Ciclev10019830m.g Citrus clementina HOM05D002999 ORTHO05D003137 1.9e-08 64.7 207 28.5
Migut.D00245 Erythranthe guttata HOM05D002999 ORTHO05D003137 1.9e-08 64.7 227 26.0
DCAR_018378 Daucus carota HOM05D002999 ORTHO05D003137 7.2e-08 62.8 233 24.0
FAN07G0959 Fragaria x ananassa HOM05D002999 ORTHO05D003137 9.4e-08 62.4 214 24.3
AUR62034587 Chenopodium quinoa HOM05D002999 ORTHO05D003137 1.6e-07 61.6 220 27.3
Peaxi162Scf00095g00130 Petunia axillaris HOM05D002999 ORTHO05D003137 1.6e-07 61.6 210 23.3
SMO232G0108 Selaginella moellendorffii HOM05D001610 ORTHO05D001585 1.6e-07 61.6 111 32.4
CBR_g29307 Chara braunii HOM05D002999 ORTHO05D003137 2.1e-07 61.2 190 25.8
CiPaw.02G088200 Carya illinoinensis HOM05D002999 ORTHO05D003137 2.7e-07 60.8 225 26.2
RcHm_v2.0_Chr4g0420461 Rosa chinensis HOM05D002999 ORTHO05D003137 3.6e-07 60.5 214 24.3
AUR62036682 Chenopodium quinoa HOM05D002999 ORTHO05D003137 4.7e-07 60.1 156 29.5
Eucgr.B01222 Eucalyptus grandis HOM05D002999 ORTHO05D003137 6.1e-07 59.7 125 28.8
Rhsim13G0020400 Rhododendron simsii HOM05D002999 ORTHO05D003137 1.0e-06 58.9 229 25.8
Migut.M00083 Erythranthe guttata HOM05D001610 ORTHO05D001585 1.8e-06 58.2 112 31.2
Nn3g21213 Nelumbo nucifera HOM05D002999 ORTHO05D003137 2.3e-06 57.8 219 23.3
Sopen12g002260 Solanum pennellii HOM05D001610 ORTHO05D001585 4.0e-06 57.0 114 28.9
Ca_09752_v3 Cicer arietinum L. HOM05D002943 ORTHO05D002685 6.8e-06 56.2 118 28.0
HanXRQChr03g0070771 Helianthus annuus HOM05D002999 ORTHO05D003137 6.8e-06 56.2 136 25.7
Nitab4.5_0007261g0030 Nicotiana tabacum HOM05D002303 ORTHO05D007639 6.8e-06 56.2 59 44.1


User provided reference genes

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