Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p055605 Quercus lobata HOM05D005056 ORTHO05D006487 4.2e-66 254.6 132 100.0
QL10p054991 Quercus lobata HOM05D005056 ORTHO05D006487 4.8e-30 134.8 106 75.5
QL93p1902_0036 Quercus lobata HOM05D005056 ORTHO05D006487 6.9e-29 131.0 106 74.5
Haze_01366 Corylus avellana HOM05D005056 ORTHO05D006487 8.5e-27 124.0 105 69.5
Eucgr.H00317 Eucalyptus grandis HOM05D005056 ORTHO05D006487 2.8e-22 109.0 105 60.0
FAN04G0894 Fragaria x ananassa HOM05D005056 ORTHO05D006487 2.8e-22 109.0 109 57.8
RcHm_v2.0_Chr7g0219421 Rosa chinensis HOM05D005056 ORTHO05D006487 6.3e-22 107.8 105 60.0
FvH4_5g27692 Fragaria vesca HOM05D005056 ORTHO05D006487 8.2e-22 107.5 109 56.9
FAN13G0846 Fragaria x ananassa HOM05D005056 ORTHO05D006487 8.2e-22 107.5 109 56.9
FAN18G4484 Fragaria x ananassa HOM05D005056 ORTHO05D006487 3.1e-21 105.5 109 56.0
PGR142G4138 Punica granatum HOM05D005056 ORTHO05D006487 1.2e-20 103.6 116 53.4
Atru.chr3.3232 Acer truncatum HOM05D005056 ORTHO05D006487 3.4e-20 102.1 105 58.1
MD17G1177700 Malus domestica HOM05D005056 ORTHO05D006487 3.4e-20 102.1 107 57.0
Thecc.05G215400 Theobroma cacao HOM05D005056 ORTHO05D006487 3.4e-20 102.1 105 57.1
TWI38G0332 Tripterygium wilfordii HOM05D005056 ORTHO05D006487 4.5e-20 101.7 105 56.2
Prupe.1G206800 Prunus persica HOM05D005056 ORTHO05D006487 7.7e-20 100.9 107 57.0
Ciclev10019145m.g Citrus clementina HOM05D005056 ORTHO05D006487 1.0e-19 100.5 105 55.2
COL.COLO4_09146 Corchorus olitorius HOM05D005056 ORTHO05D006487 1.0e-19 100.5 105 55.2
Dinv04468 Davidia involucrata HOM05D005056 ORTHO05D006487 1.3e-19 100.1 106 60.4
Duzib128G0002 Durio zibethinus HOM05D005056 ORTHO05D006487 3.8e-19 98.6 105 54.3
Gorai.012G150100 Gossypium raimondii HOM05D005056 ORTHO05D006487 5.0e-19 98.2 113 51.3
Sed0010490 Sechium edule HOM05D005056 ORTHO05D006487 6.5e-19 97.8 105 56.2
Gohir.A04G120600 Gossypium hirsutum HOM05D005056 ORTHO05D006487 8.5e-19 97.4 104 55.8
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 1.1e-18 97.1 108 59.3
CsaV3_6G007040 Cucumis sativus L. HOM05D005056 ORTHO05D006487 1.1e-18 97.1 105 56.2
Hma1.2p1_0150F.1_g066790 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 1.4e-18 96.7 107 57.0
Gohir.D04G162100 Gossypium hirsutum HOM05D005056 ORTHO05D006487 1.9e-18 96.3 104 53.8
CSS0024905 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 2.5e-18 95.9 107 57.0
Cpa.g.sc114.8 Carica papaya HOM05D005056 ORTHO05D006487 2.5e-18 95.9 105 54.3
MBI18_g06087_MAGBIO Magnolia biondii HOM05D005056 ORTHO05D006487 2.5e-18 95.9 106 56.6
SEGI_33254 Sequoiadendron giganteum HOM05D005056 ORTHO05D006487 2.5e-18 95.9 105 54.3
ClCG06G001090 Citrullus lanatus HOM05D005056 ORTHO05D006487 3.2e-18 95.5 102 56.9
Hma1.2p1_0150F.1_g066780 Hydrangea macrophylla HOM05D005056 ORTHO05D006487 5.5e-18 94.7 107 57.9
Potri.013G125800 Populus trichocarpa HOM05D005056 ORTHO05D006487 5.5e-18 94.7 106 53.8
TAR636G2681 Trochodendron aralioides HOM05D005056 ORTHO05D006487 5.5e-18 94.7 107 56.1
Glyma.02G137100 Glycine max HOM05D005056 ORTHO05D006487 7.2e-18 94.4 105 54.3
Manes.16G069500 Manihot esculenta HOM05D005056 ORTHO05D006487 7.2e-18 94.4 96 56.2
FAN12G0411 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.2e-17 93.6 108 55.6
FAN12G0483 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.2e-17 93.6 108 55.6
Sabra13G0104700 Salix brachista HOM05D005056 ORTHO05D006487 2.1e-17 92.8 106 53.8
Sabra13G0105000 Salix brachista HOM05D005056 ORTHO05D006487 2.1e-17 92.8 106 53.8
Sabra13G0105200 Salix brachista HOM05D005056 ORTHO05D006487 2.1e-17 92.8 106 53.8
Sabra13G0105300 Salix brachista HOM05D005056 ORTHO05D006487 2.1e-17 92.8 106 53.8
Glyma.07G208300 Glycine max HOM05D005056 ORTHO05D006487 2.7e-17 92.4 105 53.3
Lj4g0012801 Lotus japonicus HOM05D005056 ORTHO05D006487 2.7e-17 92.4 105 52.4
GSVIVG01038137001 Vitis vinifera HOM05D005056 ORTHO05D006487 2.7e-17 92.4 107 57.0
Rhsim13G0194600 Rhododendron simsii HOM05D005056 ORTHO05D006656 3.6e-17 92.0 107 56.1
SalBow1G2014 Salvia bowleyana HOM05D005056 ORTHO05D006487 3.6e-17 92.0 113 52.2
MELO3C022426.2 Cucumis melo HOM05D005056 ORTHO05D006487 6.1e-17 91.3 105 53.3
Aa31LG1G25370 Aethionema arabicum HOM05D005056 ORTHO05D006487 1.0e-16 90.5 106 55.7
Atru.chr4.1428 Acer truncatum HOM05D005056 ORTHO05D006487 1.4e-16 90.1 105 53.3
Migut.N03070 Erythranthe guttata HOM05D005056 ORTHO05D006487 1.4e-16 90.1 107 53.3
Phvul.003G296300 Phaseolus vulgaris HOM05D005056 ORTHO05D006487 1.4e-16 90.1 105 53.3
CANSAT56G3616 Cannabis sativa HOM05D005056 ORTHO05D006487 3.0e-16 89.0 108 50.0
Solyc11g072320.3 Solanum lycopersicum HOM05D005056 ORTHO05D006487 5.2e-16 88.2 111 49.5
Solyc11g072390.2 Solanum lycopersicum HOM05D005056 ORTHO05D006487 5.2e-16 88.2 111 49.5
Sopen11g029990 Solanum pennellii HOM05D005056 ORTHO05D006487 5.2e-16 88.2 111 49.5
Sopen11g030040 Solanum pennellii HOM05D005056 ORTHO05D006487 5.2e-16 88.2 111 49.5
AL4G42470 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 8.8e-16 87.4 106 51.9
vmacro03868 Vaccinium macrocarpon HOM05D005056 ORTHO05D006487 8.8e-16 87.4 105 52.4
Cc03_g13950 Coffea canephora HOM05D005056 ORTHO05D006487 1.5e-15 86.7 112 50.9
Lj1g0023120 Lotus japonicus HOM05D005056 ORTHO05D006487 1.5e-15 86.7 109 55.0
DCAR_019081 Daucus carota HOM05D005056 ORTHO05D006487 2.0e-15 86.3 113 51.3
VMungo0251G2998 Vigna mungo HOM05D005056 ORTHO05D006487 2.0e-15 86.3 105 51.4
Peaxi162Scf00568g00417 Petunia axillaris HOM05D005056 ORTHO05D006487 2.6e-15 85.9 111 47.7
CSS0004898 Camellia sinensis var. sinensis HOM05D005056 ORTHO05D006487 3.3e-15 85.5 96 58.3
AT2G43650 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 7.4e-15 84.3 103 51.5
FvH4_4g18081 Fragaria vesca HOM05D005056 ORTHO05D006487 1.7e-14 83.2 109 52.3
FAN08G2023 Fragaria x ananassa HOM05D005056 ORTHO05D006487 1.7e-14 83.2 110 49.1
HanXRQChr14g0439801 Helianthus annuus HOM05D005056 ORTHO05D006487 1.7e-14 83.2 111 48.6
Lalb_Chr16g0384481 Lupinus albus HOM05D005056 ORTHO05D006487 2.2e-14 82.8 105 51.4
SGA_v2.0_scaffold289G47281 Striga asiatica HOM05D005056 ORTHO05D006487 2.2e-14 82.8 100 53.0
PSO170G2549 Papaver somniferum HOM05D005056 ORTHO05D006487 2.8e-14 82.4 108 50.0
PSO302G0034 Papaver somniferum HOM05D005056 ORTHO05D006487 2.8e-14 82.4 108 50.0
arahy.Tifrunner.gnm1.ann1.K7ZH1T Arachis hypogaea HOM05D005056 ORTHO05D006487 6.3e-14 81.3 106 50.9
EL10Ac9g21710 Beta vulgaris HOM05D005056 ORTHO05D006487 6.3e-14 81.3 105 51.4
Psat7g121360 Pisum sativum HOM05D005056 ORTHO05D006487 1.1e-13 80.5 102 52.9
Oeu018048.1 Olea europaea HOM05D005056 ORTHO05D006487 1.4e-13 80.1 92 56.5
Sc08g0000580 Simmondsia chinensis HOM05D005056 ORTHO05D006487 1.4e-13 80.1 105 50.5
Medtr4g087270 Medicago truncatula HOM05D005056 ORTHO05D006487 1.8e-13 79.7 109 50.5
Nitab4.5_0002129g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 2.4e-13 79.3 110 45.5
arahy.Tifrunner.gnm1.ann1.X1H480 Arachis hypogaea HOM05D005056 ORTHO05D006487 4.1e-13 78.6 106 50.0
Nitab4.5_0001802g0080 Nicotiana tabacum HOM05D005056 ORTHO05D006487 5.3e-13 78.2 102 49.0
AT3G28230 Arabidopsis thaliana HOM05D005056 ORTHO05D006487 7.0e-13 77.8 96 52.1
Carub.0004s2618 Capsella rubella HOM05D005056 ORTHO05D006487 9.1e-13 77.4 106 49.1
CARHR138830 Cardamine hirsuta HOM05D005056 ORTHO05D006487 9.1e-13 77.4 103 47.6
TPR.G23553 Trifolium pratense HOM05D005056 ORTHO05D006487 2.6e-12 75.9 110 48.2
Pp3c13_22260 Physcomitrium patens HOM05D005056 ORTHO05D006487 3.5e-12 75.5 98 50.0
TPR.G1297 Trifolium pratense HOM05D005056 ORTHO05D006487 4.5e-12 75.1 106 51.9
CAN.G308.62 Capsicum annuum HOM05D005056 ORTHO05D006487 7.7e-12 74.3 109 44.0
Ah.01g019270 Amaranthus hybridus HOM05D005056 ORTHO05D006487 1.0e-11 73.9 105 46.7
AagrBONN_evm.TU.Sc2ySwM_228.4407 Anthoceros agrestis HOM05D005056 ORTHO05D006403 1.7e-11 73.2 104 47.1
AL5G17740 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 1.7e-11 73.2 99 51.5
AUR62016753 Chenopodium quinoa HOM05D005056 ORTHO05D006487 5.0e-11 71.6 96 51.0
HPP92_014516 Vanilla planifolia HOM05D005056 ORTHO05D006487 6.5e-11 71.2 95 50.5
CiPaw.02G100700 Carya illinoinensis HOM05D005056 ORTHO05D006487 1.5e-10 70.1 62 67.7
Mapoly0041s0093 Marchantia polymorpha HOM05D005056 ORTHO05D006403 1.9e-10 69.7 88 50.0
CDE04G2996 Ceratophyllum demersum HOM05D005056 ORTHO05D006487 2.5e-10 69.3 102 48.0
THA.LOC104803998 Tarenaya hassleriana HOM05D005056 ORTHO05D006487 2.5e-10 69.3 109 47.7
Zm00001eb034060 Zea mays HOM05D005056 ORTHO05D006487 7.2e-10 67.8 110 43.6
ECA238G2929 Erigeron canadensis HOM05D005056 ORTHO05D006487 9.4e-10 67.4 96 45.8
Os01g0104800 Oryza sativa ssp. japonica HOM05D005056 ORTHO05D006487 1.2e-09 67.0 105 44.8
SMO358G0450 Selaginella moellendorffii HOM05D005056 ORTHO05D006487 4.7e-09 65.1 103 43.7
Sp4g25750 Schrenkiella parvula HOM05D005056 ORTHO05D006487 6.1e-09 64.7 106 46.2
Lsat_1_v5_gn_2_46281 Lactuca sativa HOM05D005056 ORTHO05D006487 8.0e-09 64.3 97 48.5
Aqoxy5G00514 Aquilegia oxysepala HOM05D005056 ORTHO05D006487 1.0e-08 63.9 110 43.6
Hund06242 Selenicereus undatus HOM05D005056 ORTHO05D006487 1.0e-08 63.9 105 47.6
ATR0763G045 Amborella trichopoda HOM05D005056 ORTHO05D006487 1.8e-08 63.2 110 42.7
BolC4t28563H Brassica oleracea HOM05D005056 ORTHO05D006487 2.6e-07 59.3 107 42.1
Ca_18642_v3 Cicer arietinum L. HOM05D005056 ORTHO05D006487 3.3e-07 58.9 90 51.1
CBR_g34512 Chara braunii HOM05D005056 ORTHO05D006403 4.4e-07 58.5 72 51.4
Oeu018046.1 Olea europaea HOM05D005056 ORTHO05D006487 4.4e-07 58.5 66 54.5
A03p24390 Brassica napus HOM05D005056 ORTHO05D006487 1.3e-06 57.0 106 43.4
C03p29070 Brassica napus HOM05D005056 ORTHO05D006487 1.7e-06 56.6 106 42.5
BcaB01g03369 Brassica carinata HOM05D005056 ORTHO05D006487 3.7e-06 55.5 106 41.5
BcaC01g05222 Brassica carinata HOM05D005056 ORTHO05D006487 3.7e-06 55.5 106 41.5
AL677U10020 Arabidopsis lyrata HOM05D005056 ORTHO05D006487 8.2e-06 54.3 63 50.8


User provided reference genes

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