Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 4.5e-112 407.9 203 100.0
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 6.6e-71 271.2 199 69.8
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 4.3e-70 268.5 203 68.0
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 1.8e-68 263.1 194 69.6
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 7.1e-65 251.1 199 60.8
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 4.6e-64 248.4 196 64.8
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 7.8e-64 247.7 195 63.6
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 6.6e-63 244.6 197 60.9
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 6.6e-63 244.6 197 62.9
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.1e-62 243.8 195 63.1
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 9.6e-62 240.7 197 59.9
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 1.2e-61 240.4 196 63.3
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.8e-61 239.2 195 61.5
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 2.8e-61 239.2 197 60.4
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 3.6e-61 238.8 197 59.9
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 8.1e-61 237.7 199 58.8
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 1.4e-60 236.9 195 59.0
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.4e-60 236.9 198 59.1
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.8e-60 236.5 197 59.9
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 2.4e-60 236.1 198 56.1
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 2.6e-59 232.6 198 59.6
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 4.4e-59 231.9 196 60.2
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 4.4e-59 231.9 194 59.8
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.7e-58 229.9 194 57.7
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 2.2e-58 229.6 199 57.8
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.1e-57 227.3 195 55.9
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.1e-57 227.3 199 54.3
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.4e-57 226.9 195 59.0
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 3.2e-57 225.7 199 54.8
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 5.4e-57 224.9 188 60.6
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 7.1e-57 224.6 198 56.1
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 9.3e-57 224.2 199 54.3
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 9.3e-57 224.2 199 54.8
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 9.3e-57 224.2 193 56.5
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.6e-56 223.4 195 57.4
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.1e-56 223.0 199 56.8
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 2.1e-56 223.0 199 55.8
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 2.1e-56 223.0 195 56.4
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.7e-55 219.9 199 54.8
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 3.0e-55 219.2 199 54.8
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 3.0e-55 219.2 195 55.4
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 3.9e-55 218.8 197 55.3
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 3.9e-55 218.8 176 58.5
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 1.1e-54 217.2 199 53.3
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.5e-54 216.9 194 56.7
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.5e-54 216.9 200 53.5
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 2.5e-54 216.1 200 53.5
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 3.3e-54 215.7 201 54.7
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 5.6e-54 214.9 199 54.8
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 5.6e-54 214.9 199 53.3
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 7.3e-54 214.5 199 53.8
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.3e-53 213.8 199 52.3
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.3e-53 213.8 195 53.3
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.6e-53 213.4 195 56.4
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 2.1e-53 213.0 199 55.8
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 2.1e-53 213.0 199 53.3
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.1e-53 213.0 193 53.9
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.8e-53 212.6 196 54.1
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.8e-53 212.6 200 55.5
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.6e-53 212.2 197 53.3
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 3.6e-53 212.2 197 53.3
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 4.8e-53 211.8 199 52.3
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 6.2e-53 211.5 200 56.5
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 4.0e-52 208.8 195 54.4
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 4.0e-52 208.8 199 53.3
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 6.9e-52 208.0 194 51.5
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 9.0e-52 207.6 195 53.8
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 9.0e-52 207.6 198 53.5
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.2e-51 207.2 194 51.5
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.2e-51 207.2 198 53.0
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-51 206.8 198 52.0
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 2.0e-51 206.5 241 46.5
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 2.0e-51 206.5 197 51.8
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 2.0e-51 206.5 199 51.8
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 2.0e-51 206.5 201 50.7
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 2.6e-51 206.1 200 50.0
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 3.4e-51 205.7 198 52.5
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 4.4e-51 205.3 200 50.0
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.4e-51 205.3 198 52.0
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.4e-51 205.3 198 52.5
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 1.3e-50 203.8 199 52.8
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 2.2e-50 203.0 193 54.9
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 2.2e-50 203.0 193 52.8
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 4.9e-50 201.8 193 56.0
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.4e-49 200.3 198 49.0
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.9e-49 199.9 194 50.5
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 7.1e-49 198.0 198 49.5
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.1e-49 198.0 198 50.0
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 1.2e-48 197.2 198 51.5
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.6e-48 196.8 190 52.1
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.1e-48 196.4 182 53.3
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.5e-48 195.7 199 49.2
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 4.6e-48 195.3 197 50.8
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 4.6e-48 195.3 197 50.3
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 4.6e-48 195.3 197 51.3
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.0e-48 194.9 191 50.8
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 7.9e-48 194.5 196 51.0
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.7e-47 193.4 197 50.3
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 2.3e-47 193.0 197 49.7
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.3e-47 193.0 193 51.3
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 3.0e-47 192.6 193 49.2
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 3.0e-47 192.6 190 50.5
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 3.0e-47 192.6 169 57.4
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 1.1e-46 190.7 147 64.6
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.9e-46 189.9 197 48.2
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 2.5e-46 189.5 197 50.3
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 3.3e-46 189.1 190 47.4
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 3.3e-46 189.1 193 49.7
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.3e-46 188.7 191 49.7
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 7.3e-46 188.0 199 47.7
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 9.6e-46 187.6 197 48.2
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 9.6e-46 187.6 176 51.7
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.3e-45 187.2 190 47.9
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 2.8e-45 186.0 197 48.7
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 2.8e-45 186.0 198 49.0
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 2.8e-45 186.0 198 49.5
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 3.6e-45 185.7 190 47.9
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 3.6e-45 185.7 190 47.4
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 4.8e-45 185.3 190 48.9
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 4.8e-45 185.3 146 57.5
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 8.1e-45 184.5 190 48.4
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 8.1e-45 184.5 190 46.8
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.8e-44 183.3 176 51.1
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 5.3e-44 181.8 197 47.7
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 5.3e-44 181.8 175 52.0
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 5.3e-44 181.8 194 47.4
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 1.2e-43 180.6 193 48.2
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.2e-43 180.6 197 49.7
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 1.5e-43 180.3 193 45.1
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.5e-43 180.3 197 48.2
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 2.0e-43 179.9 175 52.0
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.2e-42 176.4 174 54.0
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 4.9e-42 175.3 199 45.7
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.2e-41 172.6 199 45.2
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 7.1e-41 171.4 196 48.0
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 7.1e-41 171.4 196 42.3
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.2e-40 170.6 198 45.5
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 7.9e-40 167.9 179 45.8
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.8e-39 166.8 197 47.7
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 3.0e-39 166.0 163 47.2
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.9e-39 165.6 128 58.6
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.1e-39 165.2 200 44.0
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 3.3e-38 162.5 192 45.3
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 7.4e-38 161.4 190 43.7
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.3e-37 160.6 165 49.1
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.6e-37 160.2 160 51.2
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.7e-37 159.1 166 50.0
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.1e-37 157.9 153 51.6
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.1e-36 157.5 195 44.6
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.8e-36 156.8 144 50.0
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.0e-34 151.0 199 41.7
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.7e-34 150.2 175 46.9
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 3.8e-34 149.1 199 41.2
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 3.5e-32 142.5 196 38.8
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.0e-32 141.7 199 40.2
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 6.0e-32 141.7 196 38.8
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.3e-31 140.6 192 39.6
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 2.3e-31 139.8 198 40.4
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 4.1e-28 129.0 200 36.5
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.1e-28 129.0 161 44.7
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 9.0e-28 127.9 136 46.3
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 4.5e-27 125.6 129 46.5
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 2.3e-23 113.2 110 52.7
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.8e-21 106.3 199 35.7
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 1.3e-18 97.4 117 41.9
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.1e-17 94.4 193 33.7
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 7.9e-16 88.2 204 29.4
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 1.8e-15 87.0 189 34.4
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 3.3e-14 82.8 93 43.0
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 4.3e-14 82.4 197 30.5
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 3.1e-12 76.3 83 48.2
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 7.7e-11 71.6 193 32.6
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.1e-09 67.8 169 29.6
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 1.9e-09 67.0 181 28.2
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.9e-09 67.0 79 41.8
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.9e-07 59.3 107 36.4


User provided reference genes

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