Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p047355 Quercus lobata HOM05D001780 ORTHO05D004373 4.3e-83 311.2 150 100.0
Potri.017G033200 Populus trichocarpa HOM05D001780 ORTHO05D004373 1.1e-19 100.5 99 51.5
QL10p047812 Quercus lobata HOM05D001780 ORTHO05D004373 5.7e-19 98.2 97 50.5
Cfa015768 Carpinus fangiana HOM05D001780 ORTHO05D004373 7.4e-19 97.8 99 48.5
Manes.04G040600 Manihot esculenta HOM05D001780 ORTHO05D004373 9.7e-19 97.4 99 49.5
Sabra07G0102600 Salix brachista HOM05D001780 ORTHO05D004373 9.7e-19 97.4 99 49.5
CiPaw.01G102300 Carya illinoinensis HOM05D001780 ORTHO05D004373 1.3e-18 97.1 97 50.5
Ciclev10018576m.g Citrus clementina HOM05D001780 ORTHO05D004373 1.3e-18 97.1 99 49.5
Lj6C607G11 Lonicera japonica HOM05D001780 ORTHO05D004373 1.6e-18 96.7 99 49.5
PSO063G4644 Papaver somniferum HOM05D001780 ORTHO05D004373 1.6e-18 96.7 98 50.0
Sed0001787 Sechium edule HOM05D001780 ORTHO05D004373 1.6e-18 96.7 99 48.5
Haze_00734 Corylus avellana HOM05D001780 ORTHO05D004373 2.8e-18 95.9 99 47.5
Cpa.g.sc32.3 Carica papaya HOM05D001780 ORTHO05D004373 3.7e-18 95.5 99 50.5
Sabra17G0020800 Salix brachista HOM05D001780 ORTHO05D004373 3.7e-18 95.5 99 49.5
GSVIVG01010735001 Vitis vinifera HOM05D001780 ORTHO05D004373 3.7e-18 95.5 99 48.5
Nn1g08648 Nelumbo nucifera HOM05D001780 ORTHO05D004373 4.8e-18 95.1 99 48.5
Atru.chr3.1561 Acer truncatum HOM05D001780 ORTHO05D004373 6.3e-18 94.7 99 48.5
Atru.chr3.1583 Acer truncatum HOM05D001780 ORTHO05D004373 6.3e-18 94.7 99 48.5
arahy.Tifrunner.gnm1.ann1.05K2HA Arachis hypogaea HOM05D001780 ORTHO05D004373 8.2e-18 94.4 99 46.5
arahy.Tifrunner.gnm1.ann1.AHZV2Y Arachis hypogaea HOM05D001780 ORTHO05D004373 8.2e-18 94.4 99 46.5
Lsat_1_v5_gn_5_77240 Lactuca sativa HOM05D001780 ORTHO05D004373 8.2e-18 94.4 99 49.5
MD04G1037200 Malus domestica HOM05D001780 ORTHO05D004373 8.2e-18 94.4 99 47.5
Oeu025915.1 Olea europaea HOM05D001780 ORTHO05D004373 8.2e-18 94.4 99 48.5
COL.COLO4_14418 Corchorus olitorius HOM05D001780 ORTHO05D004373 1.1e-17 94.0 99 48.5
Atru.chr12.1705 Acer truncatum HOM05D001780 ORTHO05D004373 1.4e-17 93.6 99 47.5
COL.COLO4_24691 Corchorus olitorius HOM05D001780 ORTHO05D004373 1.4e-17 93.6 99 48.5
CsaV3_4G003190 Cucumis sativus L. HOM05D001780 ORTHO05D004373 1.4e-17 93.6 99 47.5
Duzib106G1771 Durio zibethinus HOM05D001780 ORTHO05D004373 1.4e-17 93.6 99 46.5
Lsat_1_v5_gn_5_76141 Lactuca sativa HOM05D001780 ORTHO05D004373 1.4e-17 93.6 99 48.5
Sc20g0004730 Simmondsia chinensis HOM05D001780 ORTHO05D004373 1.4e-17 93.6 99 48.5
THA.LOC104803625 Tarenaya hassleriana HOM05D001780 ORTHO05D004373 1.4e-17 93.6 98 49.0
TWI56G0090 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 1.4e-17 93.6 99 48.5
ClCG07G015560 Citrullus lanatus HOM05D001780 ORTHO05D004373 1.8e-17 93.2 99 47.5
MELO3C017728.2 Cucumis melo HOM05D001780 ORTHO05D004373 1.8e-17 93.2 99 47.5
Gohir.A01G231000 Gossypium hirsutum HOM05D001780 ORTHO05D004373 1.8e-17 93.2 99 47.5
Gohir.D01G221100 Gossypium hirsutum HOM05D001780 ORTHO05D004373 1.8e-17 93.2 99 47.5
Gorai.002G267700 Gossypium raimondii HOM05D001780 ORTHO05D004373 1.8e-17 93.2 99 47.5
HanXRQChr10g0310431 Helianthus annuus HOM05D001780 ORTHO05D004373 1.8e-17 93.2 99 48.5
CDE05G1969 Ceratophyllum demersum HOM05D001780 ORTHO05D004373 2.4e-17 92.8 99 45.5
Actinidia34617 Actinidia chinensis HOM05D001780 ORTHO05D004373 3.1e-17 92.4 99 47.5
AUR62002268 Chenopodium quinoa HOM05D001780 ORTHO05D004373 3.1e-17 92.4 97 48.5
AUR62015426 Chenopodium quinoa HOM05D001780 ORTHO05D004373 3.1e-17 92.4 97 48.5
SGA_v2.0_scaffold29G12214 Striga asiatica HOM05D001780 ORTHO05D004373 3.1e-17 92.4 99 46.5
Aqoxy7G01270 Aquilegia oxysepala HOM05D001780 ORTHO05D004373 4.1e-17 92.0 101 46.5
ECA234G4143 Erigeron canadensis HOM05D001780 ORTHO05D004373 4.1e-17 92.0 99 48.5
Eucgr.H00404 Eucalyptus grandis HOM05D001780 ORTHO05D004373 4.1e-17 92.0 99 47.5
Potri.007G126501 Populus trichocarpa HOM05D001780 ORTHO05D004373 4.1e-17 92.0 99 47.5
Hund03144 Selenicereus undatus HOM05D001780 ORTHO05D004373 4.1e-17 92.0 97 49.5
Aa31LG10G13700 Aethionema arabicum HOM05D001780 ORTHO05D004373 5.3e-17 91.7 98 48.0
Ca_26060_v3 Cicer arietinum L. HOM05D001780 ORTHO05D004373 5.3e-17 91.7 99 45.5
Os06g0645400 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D004373 5.3e-17 91.7 99 47.5
Psat7g172640 Pisum sativum HOM05D001780 ORTHO05D004373 5.3e-17 91.7 99 46.5
CANSAT78G0939 Cannabis sativa HOM05D001780 ORTHO05D004373 6.9e-17 91.3 97 47.4
TAR362G1083 Trochodendron aralioides HOM05D001780 ORTHO05D004373 6.9e-17 91.3 96 49.0
Atru.chr12.1717 Acer truncatum HOM05D001780 ORTHO05D004373 9.0e-17 90.9 93 49.5
AT4G10320 Arabidopsis thaliana HOM05D001780 ORTHO05D004373 9.0e-17 90.9 98 49.0
Migut.D00680 Erythranthe guttata HOM05D001780 ORTHO05D004373 9.0e-17 90.9 99 44.4
RcHm_v2.0_Chr5g0060211 Rosa chinensis HOM05D001780 ORTHO05D004373 1.2e-16 90.5 99 47.5
EL10Ac3g05575 Beta vulgaris HOM05D001780 ORTHO05D004373 1.5e-16 90.1 97 47.4
BcaB06g27675 Brassica carinata HOM05D001780 ORTHO05D004373 1.5e-16 90.1 98 48.0
BcaC02g08915 Brassica carinata HOM05D001780 ORTHO05D004373 1.5e-16 90.1 98 48.0
A04p14990 Brassica napus HOM05D001780 ORTHO05D004373 1.5e-16 90.1 98 48.0
C04p49170 Brassica napus HOM05D001780 ORTHO05D004373 1.5e-16 90.1 98 48.0
BolC4t26502H Brassica oleracea HOM05D001780 ORTHO05D004373 1.5e-16 90.1 98 48.0
BraA04t17141Z Brassica rapa HOM05D001780 ORTHO05D004373 1.5e-16 90.1 98 48.0
CARHR218350 Cardamine hirsuta HOM05D001780 ORTHO05D004373 1.5e-16 90.1 98 48.0
Thhalv10027624m.g Eutrema salsugineum HOM05D001780 ORTHO05D004373 1.5e-16 90.1 98 48.0
Actinidia35963 Actinidia chinensis HOM05D001780 ORTHO05D004373 2.0e-16 89.7 99 46.5
Carub.0006s2892 Capsella rubella HOM05D001780 ORTHO05D004373 2.0e-16 89.7 98 48.0
MD09G1065200 Malus domestica HOM05D001780 ORTHO05D004373 2.0e-16 89.7 99 45.5
TWI63G0569 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 2.0e-16 89.7 99 47.5
Zm00001eb386920 Zea mays HOM05D001780 ORTHO05D004373 2.0e-16 89.7 99 45.5
Lalb_Chr09g0320441 Lupinus albus HOM05D001780 ORTHO05D004373 2.6e-16 89.4 99 43.4
PSO675G8171 Papaver somniferum HOM05D001780 ORTHO05D004373 2.6e-16 89.4 98 46.9
Prupe.1G186600 Prunus persica HOM05D001780 ORTHO05D004373 2.6e-16 89.4 99 45.5
PGR142G2637 Punica granatum HOM05D001780 ORTHO05D004373 2.6e-16 89.4 99 46.5
RcHm_v2.0_Chr4g0408181 Rosa chinensis HOM05D001780 ORTHO05D004373 2.6e-16 89.4 99 45.5
vmacro00605 Vaccinium macrocarpon HOM05D001780 ORTHO05D004373 2.6e-16 89.4 113 42.5
MSTRG.21338 Avicennia marina HOM05D001780 ORTHO05D004373 3.4e-16 89.0 99 44.4
COL.COLO4_09454 Corchorus olitorius HOM05D001780 ORTHO05D004373 3.4e-16 89.0 99 47.5
Oeu061694.1 Olea europaea HOM05D001780 ORTHO05D004373 3.4e-16 89.0 99 46.5
Phvul.011G023400 Phaseolus vulgaris HOM05D001780 ORTHO05D004373 3.4e-16 89.0 99 45.5
Dinv15122 Davidia involucrata HOM05D001780 ORTHO05D004373 4.5e-16 88.6 99 45.5
Peaxi162Scf00558g00043 Petunia axillaris HOM05D001780 ORTHO05D004373 4.5e-16 88.6 99 45.5
Sp7g00280 Schrenkiella parvula HOM05D001780 ORTHO05D004373 4.5e-16 88.6 98 46.9
MBI18_g09771_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D004373 5.9e-16 88.2 97 48.5
PSO541G0190 Papaver somniferum HOM05D001780 ORTHO05D004373 5.9e-16 88.2 98 45.9
Rhsim05G0075700 Rhododendron simsii HOM05D001780 ORTHO05D004373 5.9e-16 88.2 99 46.5
TPR.G13745 Trifolium pratense HOM05D001780 ORTHO05D004373 5.9e-16 88.2 99 44.4
VMungo1127G1244 Vigna mungo HOM05D001780 ORTHO05D004373 5.9e-16 88.2 99 44.4
ATR0789G163 Amborella trichopoda HOM05D001780 ORTHO05D004373 7.6e-16 87.8 99 44.4
Dinv33218 Davidia involucrata HOM05D001780 ORTHO05D004373 7.6e-16 87.8 98 45.9
AL6G44170 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 1.0e-15 87.4 98 46.9
Glyma.11G094300 Glycine max HOM05D001780 ORTHO05D004373 1.0e-15 87.4 98 43.9
Thecc.05G003300 Theobroma cacao HOM05D001780 ORTHO05D004373 1.0e-15 87.4 99 44.4
Lj3g0013099 Lotus japonicus HOM05D001780 ORTHO05D004373 1.3e-15 87.0 99 43.4
Dinv44242 Davidia involucrata HOM05D001780 ORTHO05D004373 1.7e-15 86.7 99 47.5
SHI29174 Sapria himalayana HOM05D001780 ORTHO05D004373 1.7e-15 86.7 97 45.4
PGSC0003DMG400013343 Solanum tuberosum HOM05D001780 ORTHO05D004373 1.7e-15 86.7 97 47.4
CBR_g17670 Chara braunii HOM05D001780 ORTHO05D004373 2.2e-15 86.3 99 44.4
FvH4_4g11470 Fragaria vesca HOM05D001780 ORTHO05D004373 2.2e-15 86.3 99 43.4
AL7G50050 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 2.9e-15 85.9 99 46.5
FAN07G0072 Fragaria x ananassa HOM05D001780 ORTHO05D004373 3.8e-15 85.5 99 43.4
FAN17G0725 Fragaria x ananassa HOM05D001780 ORTHO05D004373 3.8e-15 85.5 99 43.4
FAN22G0035 Fragaria x ananassa HOM05D001780 ORTHO05D004373 3.8e-15 85.5 99 43.4
Glyma.12G020700 Glycine max HOM05D001780 ORTHO05D004373 3.8e-15 85.5 99 43.4
Nitab4.5_0000143g0350 Nicotiana tabacum HOM05D001780 ORTHO05D004373 3.8e-15 85.5 97 46.4
Nitab4.5_0001198g0100 Nicotiana tabacum HOM05D001780 ORTHO05D004373 3.8e-15 85.5 97 46.4
CAN.G1186.25 Capsicum annuum HOM05D001780 ORTHO05D004373 5.0e-15 85.1 97 46.4
unitig_0.g306 Utricularia gibba HOM05D001780 ORTHO05D004373 5.0e-15 85.1 99 41.4
Medtr4g076850 Medicago truncatula HOM05D001780 ORTHO05D004373 6.5e-15 84.7 99 42.4
FAN17G1275 Fragaria x ananassa HOM05D001780 ORTHO05D004373 8.5e-15 84.3 99 42.4
FAN17G1933 Fragaria x ananassa HOM05D001780 ORTHO05D004373 8.5e-15 84.3 99 42.4
Solyc11g012140.2 Solanum lycopersicum HOM05D001780 ORTHO05D004373 1.1e-14 84.0 97 46.4
Sopen11g006930 Solanum pennellii HOM05D001780 ORTHO05D004373 1.1e-14 84.0 97 46.4
HPP92_012310 Vanilla planifolia HOM05D001780 ORTHO05D004373 1.1e-14 84.0 130 33.8
Mapoly0045s0031 Marchantia polymorpha HOM05D001780 ORTHO05D004373 1.9e-14 83.2 98 44.9
Cre16.g651750 Chlamydomonas reinhardtii HOM05D001780 ORTHO05D004373 3.2e-14 82.4 96 43.8
arahy.Tifrunner.gnm1.ann1.NNH8AZ Arachis hypogaea HOM05D001780 ORTHO05D004373 4.2e-14 82.0 99 42.4
AagrBONN_evm.TU.Sc2ySwM_362.2885 Anthoceros agrestis HOM05D001780 ORTHO05D004373 5.5e-14 81.6 99 43.4
Cc04_g11170 Coffea canephora HOM05D001780 ORTHO05D004373 5.5e-14 81.6 109 40.4
Pp3c16_16950 Physcomitrium patens HOM05D001780 ORTHO05D004373 1.6e-13 80.1 99 40.4
DCAR_019070 Daucus carota HOM05D001780 ORTHO05D004373 3.6e-13 79.0 137 36.5
SMO200G0022 Selaginella moellendorffii HOM05D001780 ORTHO05D004373 3.6e-13 79.0 98 41.8
BraA03t14408Z Brassica rapa HOM05D001780 ORTHO05D004373 4.6e-13 78.6 97 43.3
PRCOL_00001024 Prasinoderma coloniale HOM05D001780 ORTHO05D004373 4.6e-13 78.6 96 42.7
A03p53410 Brassica napus HOM05D001780 ORTHO05D004373 3.0e-12 75.9 95 43.2
C07p51720 Brassica napus HOM05D001780 ORTHO05D004373 3.0e-12 75.9 95 42.1
BcaC08g43402 Brassica carinata HOM05D001780 ORTHO05D004373 3.9e-12 75.5 96 40.6
C06p07700 Brassica napus HOM05D001780 ORTHO05D004373 3.9e-12 75.5 96 40.6
C07p51740 Brassica napus HOM05D001780 ORTHO05D004373 5.1e-12 75.1 94 40.4
SEGI_27434 Sequoiadendron giganteum HOM05D001780 ORTHO05D004373 5.1e-12 75.1 99 41.4
BcaNung01699 Brassica carinata HOM05D001780 ORTHO05D004373 6.7e-12 74.7 94 40.4
BolC6t35859H Brassica oleracea HOM05D001780 ORTHO05D004373 8.8e-12 74.3 95 41.1
AagrBONN_evm.TU.Sc2ySwM_368.2030 Anthoceros agrestis HOM05D001780 ORTHO05D004373 1.1e-11 73.9 98 40.8
BcaNung01700 Brassica carinata HOM05D001780 ORTHO05D004373 3.3e-11 72.4 94 39.4
Os02g0183900 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D004373 7.4e-11 71.2 93 40.9
MCO01G256 Micromonas commoda HOM05D001780 ORTHO05D004373 9.7e-11 70.9 96 37.5
Haze_26114 Corylus avellana HOM05D001780 ORTHO05D004373 1.8e-09 66.6 97 41.2
BolC7t45663H Brassica oleracea HOM05D001780 ORTHO05D004373 2.5e-06 56.2 40 57.5


User provided reference genes

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