Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 5.0e-70 267.7 140 100.0
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 5.4e-48 194.5 120 80.8
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.6e-36 156.4 121 66.1
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 8.1e-36 154.1 116 67.2
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.1e-35 153.7 121 65.3
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 1.2e-34 150.2 117 66.7
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.5e-34 149.8 121 63.6
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 5.8e-34 147.9 116 62.1
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 5.8e-34 147.9 120 64.2
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 5.8e-34 147.9 119 63.9
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.7e-33 146.4 116 62.1
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 3.8e-33 145.2 119 63.0
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 3.8e-33 145.2 120 62.5
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 6.4e-33 144.4 117 63.2
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 6.4e-33 144.4 117 63.2
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 8.4e-33 144.1 121 61.2
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 8.4e-33 144.1 116 62.1
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.4e-32 141.4 129 61.2
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 9.3e-32 140.6 116 58.6
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.2e-31 140.2 117 62.4
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.2e-31 140.2 121 62.0
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.6e-31 139.8 120 61.7
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 1.6e-31 139.8 119 58.0
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 2.1e-31 139.4 120 61.7
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 2.7e-31 139.0 119 58.8
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 4.6e-31 138.3 116 57.8
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.0e-31 137.9 121 61.2
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 7.9e-31 137.5 123 57.7
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.0e-30 137.1 120 60.0
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.0e-30 137.1 119 59.7
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.3e-30 136.7 116 56.9
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 3.0e-30 135.6 121 61.2
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 3.0e-30 135.6 119 56.3
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.1e-30 134.8 117 62.4
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 6.7e-30 134.4 119 54.6
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.5e-29 133.3 116 56.9
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 2.5e-29 132.5 119 53.8
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 2.5e-29 132.5 119 55.5
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 5.6e-29 131.3 119 53.8
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 7.4e-29 131.0 119 52.9
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.6e-28 129.8 116 55.2
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 2.1e-28 129.4 119 51.3
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 2.8e-28 129.0 115 58.3
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 4.8e-28 128.3 119 52.1
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 6.2e-28 127.9 118 55.1
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.1e-27 127.1 116 51.7
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.4e-27 126.7 119 48.7
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.8e-27 126.3 116 55.2
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 4.0e-27 125.2 113 51.3
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 4.0e-27 125.2 91 69.2
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.2e-26 123.6 117 50.4
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.2e-26 123.6 115 57.4
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 2.0e-26 122.9 122 54.9
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.6e-26 122.5 120 56.7
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.6e-26 122.5 120 56.7
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 2.6e-26 122.5 119 48.7
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.6e-26 122.5 111 56.8
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 3.4e-26 122.1 116 53.4
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 4.5e-26 121.7 120 56.7
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 9.9e-26 120.6 115 55.7
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 1.3e-25 120.2 120 51.7
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.7e-25 119.8 118 55.9
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 2.2e-25 119.4 119 47.9
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 4.9e-25 118.2 115 51.3
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 6.4e-25 117.9 123 52.0
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 8.4e-25 117.5 117 55.6
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.1e-24 117.1 115 54.8
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.1e-24 117.1 115 52.2
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.4e-24 116.7 145 46.9
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 2.4e-24 115.9 119 56.3
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 4.2e-24 115.2 117 56.4
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 7.1e-24 114.4 137 44.5
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 7.1e-24 114.4 131 45.8
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 7.1e-24 114.4 137 44.5
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 9.3e-24 114.0 115 53.9
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.2e-23 113.6 118 52.5
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.2e-23 113.6 118 52.5
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.6e-23 113.2 98 61.2
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 2.7e-23 112.5 132 44.7
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.7e-23 112.5 117 54.7
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 2.7e-23 112.5 117 54.7
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 3.5e-23 112.1 137 43.8
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 3.5e-23 112.1 111 53.2
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 3.5e-23 112.1 122 55.7
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.0e-22 110.5 115 51.3
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.3e-22 110.2 138 47.1
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 2.3e-22 109.4 115 49.6
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 2.3e-22 109.4 117 53.0
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.3e-22 109.4 119 50.4
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 6.7e-22 107.8 137 41.6
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 6.7e-22 107.8 137 42.3
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 6.7e-22 107.8 137 41.6
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 4.3e-21 105.1 116 44.8
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 4.3e-21 105.1 121 47.1
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.6e-20 103.2 120 45.0
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 2.1e-20 102.8 127 46.5
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 2.8e-20 102.4 119 41.2
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.7e-20 102.1 116 48.3
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 6.2e-20 101.3 104 51.9
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 8.1e-20 100.9 113 48.7
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.5e-18 96.7 122 42.6
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 5.8e-18 94.7 79 58.2
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 5.8e-18 94.7 65 75.4
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 2.2e-17 92.8 117 40.2
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 4.9e-17 91.7 114 45.6
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 6.5e-17 91.3 69 65.2
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.4e-16 90.1 117 45.3
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.5e-16 89.4 115 46.1
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 9.3e-16 87.4 70 60.0
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 9.3e-16 87.4 70 60.0
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 6.0e-15 84.7 111 41.4
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 7.9e-15 84.3 119 42.0
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.0e-14 84.0 115 41.7
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.3e-14 83.6 86 44.2
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.1e-13 80.5 80 55.0
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 1.1e-13 80.5 119 42.0
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 2.5e-13 79.3 65 60.0
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 4.3e-13 78.6 119 37.8
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 4.3e-13 78.6 119 37.8
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 7.4e-13 77.8 74 55.4
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 9.6e-13 77.4 73 57.5
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 9.6e-13 77.4 113 38.9
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 2.8e-12 75.9 121 37.2
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 2.8e-12 75.9 70 48.6
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.4e-11 73.6 119 41.2
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.8e-11 73.2 112 39.3
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 5.3e-11 71.6 66 54.5
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 5.3e-11 71.6 117 34.2
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.0e-09 67.4 115 35.7
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.2e-09 66.2 57 61.4
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 8.5e-09 64.3 65 47.7
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 4.6e-07 58.5 50 54.0
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.3e-06 56.2 116 33.6


User provided reference genes

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