Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 2.7e-126 455.3 219 100.0
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 9.9e-81 303.9 163 85.9
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.8e-74 283.1 163 77.3
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 3.1e-74 282.3 164 79.9
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 2.6e-73 279.3 162 79.0
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 7.6e-73 277.7 163 77.9
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 9.9e-73 277.3 162 75.9
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 1.3e-72 276.9 161 75.2
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 2.9e-72 275.8 163 77.9
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 4.9e-72 275.0 163 74.2
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 6.4e-72 274.6 164 76.8
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.1e-71 273.9 163 77.3
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.1e-71 273.9 162 75.9
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.9e-71 273.1 169 71.6
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.4e-71 272.7 169 71.6
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.4e-71 272.7 162 75.3
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 3.2e-71 272.3 163 74.2
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 4.2e-71 271.9 163 73.0
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.5e-71 271.6 162 76.5
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 9.3e-71 270.8 168 74.4
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 9.3e-71 270.8 163 73.6
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 9.3e-71 270.8 163 74.8
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.2e-70 270.4 164 75.6
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.6e-70 270.0 171 71.9
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.1e-70 269.6 162 74.7
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.7e-70 269.2 162 76.5
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 3.5e-70 268.9 163 74.2
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 4.6e-70 268.5 169 73.4
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 6.0e-70 268.1 162 77.2
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 6.0e-70 268.1 163 74.8
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.0e-69 267.3 163 74.2
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.3e-69 266.9 163 73.6
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.0e-69 265.8 163 72.4
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.0e-69 265.8 163 72.4
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.9e-69 265.4 163 73.0
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 5.1e-69 265.0 162 75.3
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 5.1e-69 265.0 164 73.8
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 6.7e-69 264.6 163 73.6
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 8.7e-69 264.2 162 74.7
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 8.7e-69 264.2 163 72.4
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.1e-68 263.8 162 72.8
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.1e-68 263.8 162 75.9
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 1.5e-68 263.5 163 72.4
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.5e-68 263.5 163 73.0
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 1.9e-68 263.1 162 73.5
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.9e-68 263.1 173 69.4
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.9e-68 263.1 164 73.2
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 2.5e-68 262.7 166 71.1
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 4.3e-68 261.9 163 73.6
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 5.6e-68 261.5 175 69.7
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 5.6e-68 261.5 163 72.4
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 9.6e-68 260.8 163 71.8
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 9.6e-68 260.8 163 73.0
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 2.8e-67 259.2 162 71.0
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 3.7e-67 258.8 171 70.2
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 6.2e-67 258.1 162 72.2
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 6.2e-67 258.1 163 73.6
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.1e-66 257.3 162 72.8
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.8e-66 256.5 169 68.6
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 5.3e-66 255.0 163 71.8
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 6.9e-66 254.6 162 72.8
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 6.9e-66 254.6 162 71.6
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 1.2e-65 253.8 163 71.8
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 2.0e-65 253.1 161 71.4
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 2.0e-65 253.1 163 71.8
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 2.6e-65 252.7 163 71.2
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.4e-65 252.3 166 70.5
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 5.8e-65 251.5 163 71.2
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 7.6e-65 251.1 163 67.5
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 7.6e-65 251.1 162 71.6
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.0e-64 250.8 145 76.6
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 2.2e-64 249.6 162 71.0
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.2e-64 249.6 163 71.2
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.2e-64 249.6 163 71.2
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.2e-64 249.6 163 71.2
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 8.4e-64 247.7 183 65.6
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 8.4e-64 247.7 162 68.5
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.4e-63 246.9 162 70.4
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.9e-63 246.5 163 67.5
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 3.2e-63 245.7 162 69.8
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 5.5e-63 245.0 163 69.3
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.2e-62 243.8 163 69.9
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 1.2e-62 243.8 162 67.9
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.0e-61 239.2 145 73.8
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 1.1e-60 237.3 167 68.9
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.9e-60 236.5 222 52.7
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 3.3e-60 235.7 162 67.3
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 9.6e-60 234.2 162 67.3
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.3e-59 233.8 145 72.4
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.6e-59 233.4 154 70.1
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 3.7e-59 232.3 143 71.3
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.1e-58 230.7 163 67.5
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.4e-58 230.3 189 58.2
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.8e-58 229.9 234 50.0
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.5e-57 226.9 163 62.6
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 2.0e-57 226.5 183 57.4
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 7.6e-57 224.6 163 66.3
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.1e-55 220.7 163 62.6
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 3.2e-55 219.2 162 59.9
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 7.2e-55 218.0 166 61.4
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 1.0e-53 214.2 145 66.9
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 4.3e-52 208.8 183 56.8
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 4.8e-51 205.3 162 55.6
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 1.8e-50 203.4 162 55.6
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 6.9e-50 201.4 162 54.9
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.2e-49 200.7 162 54.3
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 1.2e-49 200.7 162 54.3
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 2.0e-49 199.9 162 54.3
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 3.8e-48 195.7 162 53.7
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 3.8e-48 195.7 162 53.7
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 3.8e-48 195.7 162 53.7
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 3.8e-48 195.7 162 53.7
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 3.8e-48 195.7 162 53.7
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 6.5e-48 194.9 138 62.3
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.1e-47 194.1 175 53.7
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 2.5e-47 193.0 174 53.4
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 5.5e-47 191.8 167 55.1
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 5.5e-47 191.8 163 52.8
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 3.3e-44 182.6 164 52.4
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 5.7e-44 181.8 164 52.4
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 5.7e-44 181.8 164 52.4
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 4.8e-43 178.7 165 50.9
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.1e-42 176.0 175 47.4
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 9.1e-42 174.5 173 48.6
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 3.4e-41 172.6 172 52.9
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 5.5e-39 165.2 161 45.3
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 9.4e-39 164.5 175 46.3
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.6e-38 162.5 164 49.4
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.4e-37 160.6 99 72.7
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.4e-37 160.6 173 46.2
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.6e-33 146.4 163 47.9
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 5.9e-33 145.2 160 46.9
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.0e-29 132.9 120 50.8
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 3.0e-29 132.9 163 47.2
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 4.8e-27 125.6 124 47.6
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.7e-25 119.8 161 41.6
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.2e-23 111.7 164 40.2


User provided reference genes

Program Settings