Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 3.5e-161 571.6 301 100.0
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 3.8e-75 285.8 353 52.7
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 3.8e-75 285.8 353 52.7
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.5e-71 273.9 345 48.7
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 2.0e-71 273.5 318 55.3
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 2.0e-63 246.9 333 45.6
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 5.4e-61 238.8 341 46.3
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 7.0e-61 238.4 344 44.2
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 1.3e-59 234.2 334 45.2
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 1.7e-59 233.8 244 56.6
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 2.3e-59 233.4 297 48.8
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 2.5e-58 229.9 296 50.0
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 5.2e-56 222.2 297 47.8
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 8.9e-56 221.5 301 46.8
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 8.9e-56 221.5 302 48.0
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 1.2e-55 221.1 296 46.3
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 1.2e-55 221.1 309 47.9
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.5e-55 220.7 303 47.5
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 3.4e-55 219.5 301 48.2
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 4.4e-55 219.2 309 46.6
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 5.8e-55 218.8 309 46.0
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 1.3e-54 217.6 298 46.3
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 6.4e-54 215.3 298 48.7
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 8.3e-54 214.9 309 47.6
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 1.1e-53 214.5 295 48.5
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 1.9e-53 213.8 293 46.4
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.9e-53 213.8 306 45.4
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 2.4e-53 213.4 300 48.0
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 4.1e-53 212.6 306 45.1
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 1.2e-52 211.1 295 48.1
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.2e-52 211.1 304 48.4
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.6e-52 210.7 303 45.5
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.1e-52 210.3 306 44.8
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 3.5e-52 209.5 313 43.8
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 4.6e-52 209.1 308 45.5
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 4.6e-52 209.1 297 46.5
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 6.0e-52 208.8 293 46.4
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 6.0e-52 208.8 295 46.4
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.0e-51 208.0 297 45.8
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.3e-51 207.6 297 45.1
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 1.3e-51 207.6 311 46.9
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.7e-51 207.2 303 47.9
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.7e-51 207.2 311 44.7
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 2.3e-51 206.8 293 44.4
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 3.0e-51 206.5 297 45.1
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 3.0e-51 206.5 298 45.6
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 3.0e-51 206.5 300 47.0
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 3.9e-51 206.1 254 50.0
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 3.9e-51 206.1 300 46.0
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 3.9e-51 206.1 298 44.6
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 3.9e-51 206.1 302 45.4
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 3.9e-51 206.1 300 46.3
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 5.1e-51 205.7 293 44.4
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 5.1e-51 205.7 298 46.0
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 6.6e-51 205.3 293 46.1
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 6.6e-51 205.3 296 47.0
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 8.6e-51 204.9 297 45.5
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 1.5e-50 204.1 294 45.9
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 2.5e-50 203.4 292 46.6
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 3.3e-50 203.0 293 46.4
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 5.6e-50 202.2 334 44.0
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 7.3e-50 201.8 300 44.7
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 9.5e-50 201.4 292 45.9
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 1.2e-49 201.1 375 39.2
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 1.2e-49 201.1 304 44.7
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 2.8e-49 199.9 298 45.3
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 3.6e-49 199.5 280 45.7
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 4.7e-49 199.1 292 45.9
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 1.1e-48 198.0 291 44.7
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 1.4e-48 197.6 292 45.9
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.8e-48 197.2 293 44.7
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 2.3e-48 196.8 301 44.2
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 2.3e-48 196.8 299 44.8
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 3.1e-48 196.4 277 46.6
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 4.0e-48 196.1 292 45.9
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 4.0e-48 196.1 317 42.3
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 5.2e-48 195.7 339 43.1
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 6.8e-48 195.3 297 44.4
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 8.9e-48 194.9 304 43.4
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 1.2e-47 194.5 298 44.6
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 1.2e-47 194.5 292 45.2
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.5e-47 194.1 311 44.1
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.5e-47 194.1 303 45.5
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 2.0e-47 193.7 311 40.5
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 2.0e-47 193.7 291 45.4
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 4.4e-47 192.6 290 44.8
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 9.9e-47 191.4 304 44.7
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 1.3e-46 191.0 292 45.2
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 1.3e-46 191.0 292 45.2
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.7e-46 190.7 292 45.2
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.7e-46 190.7 292 44.9
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 1.7e-46 190.7 292 44.9
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.7e-46 190.7 292 44.9
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.7e-46 190.7 292 44.9
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 2.2e-46 190.3 251 47.8
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 2.2e-46 190.3 305 43.6
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.9e-46 189.9 310 42.9
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 2.9e-46 189.9 305 43.3
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 3.7e-46 189.5 291 44.7
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 4.9e-46 189.1 302 42.7
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 8.3e-46 188.3 292 43.5
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 1.4e-45 187.6 290 43.4
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.9e-45 187.2 291 44.0
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 3.2e-45 186.4 342 39.5
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 3.2e-45 186.4 300 43.3
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.6e-44 184.1 338 41.4
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.0e-43 181.4 294 42.2
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.0e-43 181.4 251 47.8
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 3.0e-43 179.9 304 42.8
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 3.0e-43 179.9 249 47.8
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 3.9e-43 179.5 300 42.0
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 6.6e-43 178.7 304 42.8
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 6.6e-43 178.7 297 43.8
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.5e-42 176.8 294 40.5
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 4.7e-41 172.6 292 41.4
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 6.2e-41 172.2 119 73.9
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 2.0e-39 167.2 297 36.7
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 4.4e-39 166.0 202 51.0
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.9e-37 160.6 199 48.7
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 7.1e-37 158.7 287 40.1
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 2.7e-36 156.8 124 62.9
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 2.7e-36 156.8 102 77.5
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 3.5e-36 156.4 309 35.9
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 6.6e-35 152.1 306 36.3
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 2.4e-32 143.7 110 64.5
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 3.1e-32 143.3 110 65.5
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 6.9e-32 142.1 294 36.7
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 6.9e-32 142.1 289 35.6
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 8.4e-30 135.2 247 40.9
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 4.2e-29 132.9 172 48.8
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 9.3e-29 131.7 119 61.3
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.5e-28 129.8 315 32.7
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 1.3e-27 127.9 256 34.0
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 1.3e-27 127.9 300 32.7
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 2.5e-26 123.6 237 41.4
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 3.3e-26 123.2 97 60.8
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.3e-25 121.3 117 49.6
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 4.8e-25 119.4 267 30.3
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 1.5e-23 114.4 92 64.1
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 2.9e-22 110.2 117 47.0
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 7.9e-12 75.5 49 65.3
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.5e-10 71.2 211 31.8
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-09 67.0 113 38.1
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.8e-09 67.0 125 42.4


User provided reference genes

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