Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.2e-284 983.0 693 100.0
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 1.3e-227 793.5 694 80.4
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 6.5e-227 791.2 694 80.3
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 6.5e-211 738.0 693 77.2
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 1.9e-210 736.5 694 75.2
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 1.6e-209 733.4 693 79.5
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 8.8e-208 727.6 690 77.8
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.0e-207 726.5 690 73.6
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 7.4e-207 724.5 690 77.7
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.3e-206 723.8 690 71.9
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 2.2e-206 723.0 696 76.3
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 4.8e-206 721.8 681 78.7
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.8e-206 721.8 687 77.9
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 6.3e-206 721.5 690 78.0
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 5.3e-205 718.4 691 76.0
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 9.1e-205 717.6 687 73.9
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 9.1e-205 717.6 694 75.9
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 2.6e-204 716.1 695 80.0
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 3.5e-204 715.7 688 76.0
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 2.9e-203 712.6 690 67.7
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 1.1e-202 710.7 691 76.7
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 1.1e-202 710.7 640 81.4
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 1.5e-202 710.3 690 75.4
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 1.6e-201 706.8 685 78.5
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 2.1e-201 706.4 693 72.9
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.1e-201 706.4 685 78.7
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.7e-201 706.1 684 79.1
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 4.7e-201 705.3 689 75.3
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 3.0e-200 702.6 686 77.1
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 4.0e-200 702.2 707 75.7
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 4.0e-200 702.2 700 72.6
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 8.8e-200 701.0 688 73.5
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.3e-198 697.2 689 73.6
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 1.3e-198 697.2 665 73.7
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 4.8e-198 695.3 690 76.5
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 8.3e-198 694.5 689 73.9
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 4.1e-197 692.2 688 72.8
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 9.1e-197 691.0 699 71.1
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.2e-196 690.6 723 64.5
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 2.0e-196 689.9 693 72.6
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 2.7e-196 689.5 689 76.3
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 3.5e-196 689.1 684 71.6
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 3.5e-196 689.1 688 77.8
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 2.9e-195 686.0 689 76.1
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 6.5e-195 684.9 691 72.4
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 5.5e-194 681.8 689 74.6
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 7.2e-194 681.4 689 75.9
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 2.1e-193 679.9 679 74.7
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 2.1e-193 679.9 692 72.5
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 8.0e-193 677.9 686 72.6
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 1.8e-192 676.8 687 70.3
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 6.8e-192 674.9 683 76.4
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.5e-191 673.7 692 71.2
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 2.6e-191 672.9 692 75.1
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 5.7e-191 671.8 671 76.2
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 7.5e-191 671.4 693 73.4
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 9.8e-191 671.0 686 73.8
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 1.1e-189 667.5 686 76.5
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 1.1e-189 667.5 693 73.3
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 7.0e-189 664.8 681 74.2
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 9.1e-189 664.5 698 70.3
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 1.6e-188 663.7 682 71.6
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 2.7e-188 662.9 691 76.1
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.3e-187 660.6 699 72.0
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 1.7e-187 660.2 677 71.8
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 6.6e-187 658.3 699 70.1
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 1.5e-186 657.1 694 71.6
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 1.9e-186 656.8 686 74.2
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 3.3e-186 656.0 690 71.9
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 4.2e-186 655.6 673 71.8
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 4.7e-185 652.1 698 70.5
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 4.7e-185 652.1 699 70.1
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.0e-184 651.0 681 70.9
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 1.8e-184 650.2 691 70.2
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 1.8e-184 650.2 691 70.2
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 2.3e-184 649.8 691 70.0
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 5.2e-184 648.7 691 70.0
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 5.2e-184 648.7 691 70.2
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 5.2e-184 648.7 691 70.2
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.2e-183 647.5 671 70.6
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 1.7e-182 643.7 678 70.5
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.7e-182 643.7 680 68.4
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 3.7e-182 642.5 681 70.2
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 3.7e-182 642.5 674 65.4
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 6.3e-182 641.7 688 73.5
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 7.0e-181 638.3 684 69.4
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.7e-180 636.3 688 65.4
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 2.3e-179 633.3 667 70.0
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 6.6e-179 631.7 572 77.1
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 6.6e-179 631.7 686 65.9
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 8.6e-179 631.3 576 72.6
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 2.5e-178 629.8 724 61.6
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 1.6e-177 627.1 707 70.7
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 2.8e-177 626.3 686 68.1
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 8.0e-177 624.8 685 68.6
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 1.8e-176 623.6 666 71.0
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 4.0e-176 622.5 680 72.4
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 2.6e-175 619.8 534 89.3
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 2.2e-174 616.7 619 76.6
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 2.9e-174 616.3 685 68.2
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 6.4e-174 615.1 660 71.8
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 6.0e-172 608.6 671 68.4
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 9.5e-170 601.3 563 73.9
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 9.8e-167 591.3 661 66.0
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.0e-163 581.3 660 66.1
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.3e-163 580.9 684 56.3
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 3.6e-161 572.8 631 69.3
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.5e-159 567.4 600 72.2
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 4.9e-158 562.4 688 71.8
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 1.6e-153 547.4 685 65.4
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 1.4e-152 544.3 540 74.8
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 2.4e-152 543.5 677 64.3
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.8e-144 517.3 743 64.9
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 6.4e-142 508.8 533 77.1
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 1.9e-141 507.3 539 74.4
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 3.8e-134 483.0 611 60.4
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 8.7e-131 471.9 508 74.4
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 1.0e-126 458.4 701 49.9
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 4.5e-119 433.0 683 50.1
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 1.1e-114 418.3 642 50.2
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 9.0e-112 408.7 541 58.8
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 2.0e-111 407.5 637 49.5
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 7.9e-108 395.6 306 70.3
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 3.9e-107 393.3 309 69.3
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.0e-98 364.4 253 73.1
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 4.4e-98 363.2 485 68.9
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 5.3e-96 356.3 458 46.9
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 2.6e-95 354.0 269 68.8
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.0e-94 352.1 511 53.8
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 1.3e-81 308.5 476 56.9
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.3e-81 308.5 224 81.7
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 6.3e-73 279.6 320 52.2
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 1.2e-71 275.4 318 55.3
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 1.6e-71 275.0 298 54.7
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 7.7e-71 272.7 203 70.9
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 3.3e-69 267.3 295 55.3
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 4.4e-66 256.9 319 76.2
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 7.8e-63 246.1 286 83.9
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 4.3e-61 240.4 235 53.2
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 4.4e-58 230.3 165 86.1
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 1.1e-56 225.7 138 81.2
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.4e-51 208.8 229 52.4
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 1.8e-51 208.4 315 42.9
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 3.2e-48 197.6 111 87.4
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 1.0e-46 192.6 288 83.3
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 5.1e-46 190.3 111 84.7
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 1.1e-45 189.1 167 64.1
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 4.9e-41 173.7 84 96.4
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 9.2e-40 169.5 190 61.1
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 8.7e-30 136.3 321 57.3
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.3e-29 134.4 96 71.9
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.3e-28 132.5 96 72.9
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.6e-28 132.1 93 72.0
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.1e-27 129.4 105 64.8
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 1.5e-26 125.6 123 48.8
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 8.1e-20 103.2 69 72.5
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 7.9e-15 86.7 193 32.6
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 1.0e-14 86.3 68 63.2
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.8e-14 85.5 66 65.2
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 1.8e-14 85.5 171 35.7
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 1.1e-13 82.8 62 64.5
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 5.6e-13 80.5 63 63.5
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 1.1e-11 76.3 147 34.0
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 1.4e-11 75.9 64 57.8
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 2.6e-10 71.6 124 40.3
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 2.6e-10 71.6 87 47.1
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 5.8e-10 70.5 191 25.7
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.7e-09 68.9 52 63.5
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 3.8e-09 67.8 73 47.9
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 1.2e-07 62.8 59 54.2
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 1.6e-07 62.4 44 65.9
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 2.7e-07 61.6 55 54.5
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 2.7e-07 61.6 524 28.4
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 4.6e-07 60.8 49 61.2
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 7.9e-07 60.1 68 52.9


User provided reference genes

Program Settings