Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 0.0e+00 1144.0 545 100.0
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.6e-207 725.7 541 66.7
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.7e-201 706.4 541 65.2
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.8e-200 703.0 541 65.1
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 2.3e-179 632.9 542 56.6
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 1.4e-171 607.1 544 55.3
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 4.0e-171 605.5 542 54.1
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 9.8e-170 600.9 544 55.0
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.3e-169 600.5 543 55.1
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.7e-169 600.1 543 54.5
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 5.0e-166 588.6 508 55.9
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 3.6e-164 582.4 544 52.2
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 3.0e-163 579.3 542 53.7
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 8.9e-163 577.8 542 51.8
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.2e-162 577.4 542 52.2
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 3.7e-161 572.4 542 53.7
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 1.2e-159 567.4 543 52.5
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 3.5e-159 565.8 542 52.2
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 7.8e-159 564.7 491 55.8
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 4.3e-157 558.9 542 50.0
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 3.4e-154 549.3 542 51.5
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.3e-153 547.4 543 50.1
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 4.1e-152 542.3 543 50.3
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 7.8e-151 538.1 543 50.6
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 3.9e-150 535.8 543 49.9
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 3.3e-149 532.7 539 49.0
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 2.8e-148 529.6 539 48.1
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 6.2e-148 528.5 544 48.7
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 1.8e-147 526.9 544 48.2
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 1.5e-146 523.9 563 48.0
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 2.0e-146 523.5 539 47.1
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 4.4e-146 522.3 546 47.3
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 2.2e-145 520.0 539 48.2
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 6.4e-145 518.5 542 48.3
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.4e-144 516.5 544 47.8
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 3.2e-144 516.2 539 47.9
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 7.0e-144 515.0 544 47.6
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 7.8e-143 511.5 541 49.4
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 7.8e-143 511.5 542 48.2
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 8.6e-142 508.1 543 47.3
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 5.8e-138 495.4 543 46.6
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 2.2e-137 493.4 542 46.5
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 3.2e-136 489.6 548 49.1
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 1.6e-135 487.3 552 46.0
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 8.6e-134 481.5 543 45.1
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 5.4e-128 462.2 532 46.1
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 7.1e-128 461.8 561 44.2
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 1.7e-126 457.2 382 59.2
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 6.6e-126 455.3 545 44.6
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 3.3e-125 453.0 545 45.0
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 4.3e-125 452.6 375 57.1
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 9.6e-125 451.4 554 45.3
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 2.0e-122 443.7 379 55.1
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 2.0e-122 443.7 378 57.1
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 1.7e-121 440.7 541 43.3
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 3.5e-119 433.0 541 43.1
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 4.6e-119 432.6 543 43.8
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 6.0e-119 432.2 541 43.1
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 1.7e-118 430.6 540 42.4
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.3e-118 430.3 541 43.1
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 4.3e-117 426.0 547 43.3
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 1.6e-116 424.1 550 42.9
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 9.0e-115 418.3 542 41.0
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.2e-114 417.9 546 40.8
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 1.3e-113 414.5 518 44.8
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.7e-111 406.8 542 42.6
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 6.0e-111 405.6 538 42.0
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.0e-110 404.8 542 42.6
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.5e-109 401.0 612 39.5
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 5.6e-109 399.1 547 39.7
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 2.1e-108 397.1 543 40.3
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 1.4e-107 394.4 543 40.3
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.5e-106 391.0 543 39.4
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 9.9e-106 388.3 549 39.3
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 2.2e-105 387.1 549 39.2
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.9e-105 386.7 556 39.9
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.2e-103 381.3 549 39.0
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 8.7e-102 375.2 305 57.4
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 5.6e-101 372.5 542 39.3
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.1e-100 370.5 499 39.7
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.8e-100 369.4 584 36.6
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 4.8e-100 369.4 262 64.1
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 1.4e-99 367.9 477 41.7
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.8e-99 367.5 550 38.0
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 9.0e-99 365.2 540 38.9
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 7.6e-98 362.1 578 36.5
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 1.3e-97 361.3 541 37.9
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 2.2e-97 360.5 546 38.3
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 8.4e-97 358.6 541 38.4
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.4e-96 357.8 540 38.3
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 1.4e-96 357.8 558 36.0
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 7.1e-96 355.5 540 37.8
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 1.2e-95 354.8 540 37.0
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 4.6e-95 352.8 543 37.8
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 1.0e-94 351.7 541 37.9
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 5.7e-93 345.9 558 37.1
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 5.7e-93 345.9 558 37.1
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.8e-92 343.6 545 37.2
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 1.8e-91 340.9 549 36.4
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 3.1e-91 340.1 538 35.7
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.0e-90 337.4 541 37.2
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 2.6e-90 337.0 556 36.5
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 4.5e-90 336.3 518 37.8
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 2.1e-87 327.4 539 35.1
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 3.6e-87 326.6 542 37.3
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 7.9e-87 325.5 255 62.4
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 8.8e-86 322.0 557 35.7
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.0e-85 320.9 560 35.2
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 2.5e-85 320.5 262 58.0
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 3.3e-85 320.1 542 37.8
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 9.7e-85 318.5 334 47.6
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 1.7e-84 317.8 551 34.5
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 3.7e-84 316.6 559 35.2
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 8.2e-84 315.5 542 36.3
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 1.8e-83 314.3 470 37.9
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.6e-82 310.5 556 34.7
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 3.8e-81 306.6 542 36.3
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 5.1e-78 296.2 540 32.4
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 3.3e-77 293.5 546 33.3
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 5.7e-77 292.7 309 47.9
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 9.7e-77 292.0 546 34.2
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 9.7e-77 292.0 546 34.2
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 6.3e-76 289.3 538 33.1
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 2.4e-75 287.3 546 33.5
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 2.0e-74 284.3 543 33.7
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.6e-74 283.9 380 39.5
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.5e-74 283.5 403 40.2
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 4.5e-74 283.1 493 34.7
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 7.7e-74 282.3 543 33.9
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.2e-71 275.0 302 44.4
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 3.6e-71 273.5 378 42.3
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 6.1e-71 272.7 298 44.3
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 1.0e-70 271.9 548 31.2
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 1.1e-69 268.5 575 30.4
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 4.8e-68 263.1 550 32.4
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 6.3e-68 262.7 571 29.9
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 2.1e-63 247.7 572 30.9
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 1.7e-60 238.0 291 45.7
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 4.8e-60 236.5 547 30.5
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 3.8e-57 226.9 538 29.6
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 1.5e-56 224.9 380 35.0
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 8.0e-55 219.2 203 51.7
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 2.6e-53 214.2 593 27.8
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.8e-52 210.7 196 51.0
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 4.1e-51 206.8 299 38.1
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.6e-47 194.9 137 63.5
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 2.1e-47 194.5 438 31.3
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 3.2e-43 180.6 144 57.6
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 1.5e-40 171.8 81 97.5
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 3.1e-38 164.1 201 44.3
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 1.4e-35 155.2 232 38.8
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 4.9e-28 130.2 86 70.9
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 2.8e-23 114.4 507 23.1
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 2.1e-18 98.2 61 72.1
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 2.3e-17 94.7 280 25.7
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 6.2e-15 86.7 110 40.9
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 1.5e-13 82.0 65 53.8
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 2.6e-13 81.3 61 60.7
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 3.4e-13 80.9 96 46.9
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 5.8e-13 80.1 380 22.6
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 5.8e-13 80.1 125 32.0
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 1.7e-12 78.6 96 47.9
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 6.4e-12 76.6 82 40.2
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 9.3e-11 72.8 84 45.2
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 2.7e-10 71.2 93 38.7
Cpa.g.sc10.94 Carica papaya HOM05D004162 ORTHO05D004543 1.6e-07 62.0 37 73.0
QL08p034434 Quercus lobata HOM05D003773 ORTHO05D004377 1.4e-06 58.9 85 40.0
Dinv32093 Davidia involucrata HOM05D004162 ORTHO05D004543 5.3e-06 57.0 46 63.0


User provided reference genes

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