Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 1.9e-228 795.4 375 100.0
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 3.8e-221 771.2 375 96.8
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 2.4e-199 698.7 373 87.1
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 1.5e-198 696.0 372 85.5
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 5.1e-194 681.0 374 82.6
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 7.4e-193 677.2 375 84.0
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 3.7e-192 674.9 374 82.9
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 4.8e-192 674.5 374 82.6
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 2.6e-190 668.7 374 82.1
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 5.8e-190 667.5 372 82.3
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 7.6e-190 667.2 374 82.1
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 1.3e-189 666.4 372 81.2
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 2.2e-189 665.6 374 80.5
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 6.5e-189 664.1 375 81.6
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 8.4e-189 663.7 373 81.5
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.1e-188 663.3 373 80.2
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 1.1e-188 663.3 372 81.5
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 1.4e-188 662.9 374 80.2
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 5.5e-188 661.0 383 79.9
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.1e-187 659.1 373 79.9
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 3.5e-187 658.3 371 81.9
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 1.0e-186 656.8 374 79.4
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.3e-186 656.4 373 80.2
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.8e-186 656.0 373 79.9
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 2.3e-186 655.6 366 80.9
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 2.3e-186 655.6 374 79.9
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 3.9e-186 654.8 373 80.2
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 6.7e-186 654.1 374 81.3
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 8.7e-186 653.7 375 81.1
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 1.1e-185 653.3 375 79.7
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 1.9e-185 652.5 373 78.0
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.9e-185 652.5 375 79.7
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 1.9e-185 652.5 374 79.1
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 4.3e-185 651.4 375 79.7
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 5.7e-185 651.0 374 78.9
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 5.7e-185 651.0 368 79.3
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 5.7e-185 651.0 373 79.1
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 5.7e-185 651.0 374 78.9
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 7.4e-185 650.6 374 79.7
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 7.4e-185 650.6 372 79.3
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.6e-184 649.4 382 77.7
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 2.2e-184 649.0 375 79.2
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 2.8e-184 648.7 374 78.9
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 8.2e-184 647.1 374 78.9
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 4.1e-183 644.8 375 77.6
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.2e-182 643.3 375 78.9
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.5e-182 642.9 373 77.5
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 1.5e-182 642.9 375 78.9
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 2.0e-182 642.5 374 77.3
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 7.7e-182 640.6 391 75.7
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 1.0e-181 640.2 374 78.1
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.2e-181 639.0 373 77.7
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 1.4e-180 636.3 374 77.0
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.4e-180 636.3 372 78.5
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 7.2e-180 634.0 375 78.1
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 7.2e-180 634.0 373 76.1
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 1.2e-179 633.3 372 76.9
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 1.6e-179 632.9 372 76.3
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 2.1e-179 632.5 372 76.9
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 3.6e-179 631.7 373 76.9
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 6.1e-179 630.9 373 75.9
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 7.9e-179 630.6 372 76.9
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 1.0e-178 630.2 374 77.0
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 1.0e-178 630.2 374 76.7
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 3.0e-178 628.6 373 75.6
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 6.7e-178 627.5 370 77.0
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 2.0e-177 625.9 370 76.2
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 3.3e-177 625.2 373 76.4
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 5.7e-177 624.4 374 74.3
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.2e-176 622.5 373 76.4
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 2.8e-176 622.1 374 74.9
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 2.8e-176 622.1 380 74.7
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 1.1e-175 620.2 372 74.7
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 1.4e-175 619.8 372 76.3
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 2.6e-174 615.5 374 75.1
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.0e-173 613.6 380 76.8
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 1.0e-173 613.6 368 74.7
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 4.2e-172 608.2 371 73.3
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 4.2e-172 608.2 368 73.9
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 9.4e-172 607.1 371 73.3
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 2.1e-171 605.9 372 74.5
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 2.1e-171 605.9 374 74.1
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 2.1e-171 605.9 357 76.8
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 2.7e-171 605.5 374 73.8
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 3.6e-171 605.1 373 73.2
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 6.1e-171 604.4 373 73.2
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 7.9e-171 604.0 369 74.5
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 7.9e-171 604.0 368 73.6
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 2.3e-170 602.4 369 74.3
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 2.3e-170 602.4 373 72.9
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 6.7e-170 600.9 385 72.7
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.3e-169 598.6 348 79.3
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 5.7e-169 597.8 403 70.0
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 7.4e-169 597.4 373 71.6
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 7.4e-169 597.4 343 79.6
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 1.7e-168 596.3 369 72.9
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 2.8e-168 595.5 374 71.4
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 3.7e-168 595.1 454 63.9
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 6.3e-168 594.3 372 75.0
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 8.2e-168 594.0 403 67.2
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 1.1e-167 593.6 368 73.4
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 3.1e-167 592.0 426 67.4
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 2.2e-165 585.9 377 73.7
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 8.5e-165 583.9 410 68.8
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 8.0e-163 577.4 374 69.8
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 5.7e-161 571.2 368 71.2
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 2.4e-159 565.8 369 71.3
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 1.3e-157 560.1 308 85.1
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.3e-157 560.1 375 68.0
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 1.8e-154 549.7 374 66.6
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 5.2e-154 548.1 373 68.4
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 6.7e-154 547.7 361 68.7
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 2.0e-153 546.2 370 67.6
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 4.1e-151 538.5 374 66.0
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 3.5e-150 535.4 373 64.6
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 3.4e-145 518.8 417 60.7
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 7.5e-145 517.7 366 65.6
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 5.2e-138 495.0 293 75.4
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 2.4e-135 486.1 372 63.2
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 2.3e-130 469.5 384 59.6
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 5.6e-124 448.4 278 74.1
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 6.4e-120 434.9 344 64.5
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 3.1e-114 416.0 385 53.8
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.8e-98 363.6 250 69.2
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.3e-98 362.1 229 71.6
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 4.4e-97 359.0 217 74.7
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 6.6e-93 345.1 382 46.9
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 2.5e-92 343.2 373 48.8
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 9.6e-92 341.3 221 71.9
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 2.8e-91 339.7 384 46.4
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 1.3e-85 320.9 403 44.4
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.3e-83 314.3 204 71.1
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 1.0e-77 294.7 170 78.2
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.1e-77 292.4 165 77.0
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 7.2e-63 245.4 171 69.0
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 5.5e-47 192.6 474 30.2
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 3.7e-43 179.9 94 86.2
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 3.7e-35 153.3 100 70.0
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 8.3e-35 152.1 100 69.0
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.4e-34 150.6 129 64.3
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 9.4e-31 138.7 78 83.3
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 5.4e-26 122.9 92 65.2
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 1.3e-24 118.2 340 27.6
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 2.3e-16 90.9 163 35.6
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 5.6e-15 86.3 157 35.7
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 2.8e-14 84.0 43 86.0
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 4.7e-14 83.2 47 80.9
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 3.1e-13 80.5 46 76.1
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 2.0e-12 77.8 39 89.7
Cpa.g.c47417 Carica papaya HOM05D004692 ORTHO05D117256 3.3e-07 60.5 29 89.7
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 7.3e-07 59.3 30 70.0
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 6.2e-06 56.2 29 69.0


User provided reference genes

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