Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p017636 Quercus lobata HOM05D000032 ORTHO05D009383 5.3e-57 224.2 117 100.0
QL02p068178 Quercus lobata HOM05D000032 ORTHO05D009383 2.1e-21 105.9 72 77.8
Ciclev10017882m.g Citrus clementina HOM05D000032 ORTHO05D009383 2.0e-19 99.4 72 66.7
Lj1A478G35 Lonicera japonica HOM05D000032 ORTHO05D009383 2.6e-19 99.0 54 87.0
Manes.04G096700 Manihot esculenta HOM05D000032 ORTHO05D009383 3.4e-19 98.6 73 64.4
Lj1A470G20 Lonicera japonica HOM05D000032 ORTHO05D009383 4.4e-19 98.2 72 68.1
Thecc.04G052100 Theobroma cacao HOM05D000032 ORTHO05D009383 4.4e-19 98.2 73 65.8
Atru.chr12.440 Acer truncatum HOM05D000032 ORTHO05D009383 5.8e-19 97.8 72 68.1
MD17G1003800 Malus domestica HOM05D000032 ORTHO05D009383 7.5e-19 97.4 72 65.3
Nn3g18407 Nelumbo nucifera HOM05D000032 ORTHO05D009383 7.5e-19 97.4 72 63.9
Actinidia01839 Actinidia chinensis HOM05D000032 ORTHO05D009383 9.8e-19 97.1 72 65.3
TWI32G0219 Tripterygium wilfordii HOM05D000032 ORTHO05D009383 9.8e-19 97.1 72 63.9
Haze_14989 Corylus avellana HOM05D000032 ORTHO05D009383 1.3e-18 96.7 58 82.8
Cc01_g03330 Coffea canephora HOM05D000032 ORTHO05D009383 1.7e-18 96.3 73 63.0
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 2.2e-18 95.9 73 61.6
CsaV3_3G020080 Cucumis sativus L. HOM05D000032 ORTHO05D009383 3.7e-18 95.1 72 65.3
CSS0019503 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 4.9e-18 94.7 72 65.3
CSS0028588 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 4.9e-18 94.7 72 65.3
PSO339G1569 Papaver somniferum HOM05D000032 ORTHO05D009383 4.9e-18 94.7 73 64.4
PSO384G0785 Papaver somniferum HOM05D000032 ORTHO05D009383 4.9e-18 94.7 73 64.4
Sed0009896 Sechium edule HOM05D000032 ORTHO05D009383 4.9e-18 94.7 72 66.7
Glyma.02G068300 Glycine max HOM05D000032 ORTHO05D009383 6.4e-18 94.4 72 63.9
Peaxi162Scf00192g00012 Petunia axillaris HOM05D000032 ORTHO05D009383 6.4e-18 94.4 72 62.5
Potri.014G140100 Populus trichocarpa HOM05D000032 ORTHO05D009383 6.4e-18 94.4 73 60.3
Nitab4.5_0003436g0100 Nicotiana tabacum HOM05D000032 ORTHO05D009383 8.3e-18 94.0 72 61.1
Sc14g0008440 Simmondsia chinensis HOM05D000032 ORTHO05D009383 1.1e-17 93.6 73 63.0
CSS0012229 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 1.4e-17 93.2 72 63.9
Glyma.16G149800 Glycine max HOM05D000032 ORTHO05D009383 1.4e-17 93.2 72 62.5
Phvul.004G067700 Phaseolus vulgaris HOM05D000032 ORTHO05D009383 1.4e-17 93.2 72 62.5
RcHm_v2.0_Chr2g0147891 Rosa chinensis HOM05D000032 ORTHO05D009383 1.4e-17 93.2 72 63.9
TAR633G1362 Trochodendron aralioides HOM05D000032 ORTHO05D009383 1.4e-17 93.2 72 63.9
VMungo0464G1688 Vigna mungo HOM05D000032 ORTHO05D009383 1.4e-17 93.2 72 62.5
MSTRG.18394 Avicennia marina HOM05D000032 ORTHO05D009383 1.9e-17 92.8 72 62.5
Rhsim13G0227500 Rhododendron simsii HOM05D006358 ORTHO05D009383 1.9e-17 92.8 72 65.3
CAN.G140.9 Capsicum annuum HOM05D000032 ORTHO05D009383 2.4e-17 92.4 72 61.1
Duzib187G1127 Durio zibethinus HOM05D000032 ORTHO05D009383 2.4e-17 92.4 73 64.4
Solyc01g006340.3 Solanum lycopersicum HOM05D000032 ORTHO05D009383 2.4e-17 92.4 72 59.7
Sopen01g002340 Solanum pennellii HOM05D000032 ORTHO05D009383 2.4e-17 92.4 72 59.7
PGSC0003DMG400032150 Solanum tuberosum HOM05D000032 ORTHO05D009383 3.2e-17 92.0 72 59.7
arahy.Tifrunner.gnm1.ann1.U3NDHF Arachis hypogaea HOM05D000032 ORTHO05D009383 4.1e-17 91.7 72 62.5
HanXRQChr14g0453351 Helianthus annuus HOM05D000032 ORTHO05D009383 4.1e-17 91.7 72 65.3
ClCG05G012450 Citrullus lanatus HOM05D000032 ORTHO05D009383 5.4e-17 91.3 72 62.5
MELO3C014755.2 Cucumis melo HOM05D000032 ORTHO05D009383 5.4e-17 91.3 72 63.9
Gohir.D10G081800 Gossypium hirsutum HOM05D000032 ORTHO05D009383 5.4e-17 91.3 73 63.0
Gorai.011G088700 Gossypium raimondii HOM05D000032 ORTHO05D009383 5.4e-17 91.3 73 63.0
Lalb_Chr03g0043781 Lupinus albus HOM05D000032 ORTHO05D009383 5.4e-17 91.3 72 61.1
arahy.Tifrunner.gnm1.ann1.8UB6M3 Arachis hypogaea HOM05D000032 ORTHO05D009383 7.0e-17 90.9 72 62.5
Lsat_1_v5_gn_2_101321 Lactuca sativa HOM05D000032 ORTHO05D009383 7.0e-17 90.9 73 63.0
PGR044G2709 Punica granatum HOM05D000032 ORTHO05D009383 7.0e-17 90.9 72 61.1
Aqoxy7G03583 Aquilegia oxysepala HOM05D000032 ORTHO05D009383 9.2e-17 90.5 70 65.7
COL.COLO4_13406 Corchorus olitorius HOM05D000032 ORTHO05D009383 9.2e-17 90.5 73 65.8
vmacro21760 Vaccinium macrocarpon HOM05D000032 ORTHO05D009383 9.2e-17 90.5 72 62.5
FAN02G2103 Fragaria x ananassa HOM05D000032 ORTHO05D009383 1.2e-16 90.1 72 61.1
Gohir.A10G069700 Gossypium hirsutum HOM05D000032 ORTHO05D009383 1.2e-16 90.1 73 63.0
Psat1g014560 Pisum sativum HOM05D000032 ORTHO05D009383 1.2e-16 90.1 80 57.5
ECA238G2389 Erigeron canadensis HOM05D000032 ORTHO05D009383 1.6e-16 89.7 72 62.5
Eucgr.K02338 Eucalyptus grandis HOM05D000032 ORTHO05D009383 1.6e-16 89.7 72 56.9
FvH4_6g35850 Fragaria vesca HOM05D000032 ORTHO05D009383 1.6e-16 89.7 72 61.1
FAN09G2555 Fragaria x ananassa HOM05D000032 ORTHO05D009383 1.6e-16 89.7 72 61.1
FAN14G3162 Fragaria x ananassa HOM05D000032 ORTHO05D009383 1.6e-16 89.7 72 61.1
FAN14G3671 Fragaria x ananassa HOM05D000032 ORTHO05D009383 1.6e-16 89.7 72 61.1
MBI11_g17278_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D009383 1.6e-16 89.7 72 59.7
Medtr6g033070 Medicago truncatula HOM05D000032 ORTHO05D009383 1.6e-16 89.7 80 57.5
Cpa.g.sc17.215 Carica papaya HOM05D000032 ORTHO05D009383 2.1e-16 89.4 75 65.3
TPR.G6050 Trifolium pratense HOM05D000032 ORTHO05D009383 2.7e-16 89.0 72 58.3
Ca_04506_v3 Cicer arietinum L. HOM05D000032 ORTHO05D009383 4.6e-16 88.2 70 58.6
unitig_0.g181 Utricularia gibba HOM05D000032 ORTHO05D009383 4.6e-16 88.2 77 54.5
Migut.D00539 Erythranthe guttata HOM05D000032 ORTHO05D009383 6.0e-16 87.8 72 58.3
Hma1.2p1_0098F.1_g048240 Hydrangea macrophylla HOM05D000032 ORTHO05D009383 6.0e-16 87.8 63 69.8
THA.LOC104823368 Tarenaya hassleriana HOM05D000032 ORTHO05D009383 1.3e-15 86.7 72 59.7
EL10Ac9g22788 Beta vulgaris HOM05D000032 ORTHO05D009383 2.3e-15 85.9 72 58.3
Os02g0201900 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D009383 2.3e-15 85.9 72 56.9
EL10Ac7g17945 Beta vulgaris HOM05D000032 ORTHO05D009383 3.9e-15 85.1 72 59.7
CDE07G0397 Ceratophyllum demersum HOM05D000032 ORTHO05D009383 3.9e-15 85.1 79 55.7
AUR62016519 Chenopodium quinoa HOM05D000032 ORTHO05D009383 3.9e-15 85.1 86 51.2
Ah.15g094020 Amaranthus hybridus HOM05D000032 ORTHO05D009383 6.6e-15 84.3 79 50.6
Lj3g0015614 Lotus japonicus HOM05D000032 ORTHO05D009383 8.6e-15 84.0 72 56.9
AL3G10020 Arabidopsis lyrata HOM05D000032 ORTHO05D009383 1.5e-14 83.2 58 63.8
AT3G02065 Arabidopsis thaliana HOM05D000032 ORTHO05D009383 1.5e-14 83.2 58 63.8
BcaNung05597 Brassica carinata HOM05D000032 ORTHO05D009383 1.5e-14 83.2 58 63.8
Carub.0003s0002 Capsella rubella HOM05D000032 ORTHO05D009383 1.5e-14 83.2 85 52.9
Zm00001eb235630 Zea mays HOM05D000032 ORTHO05D009383 1.5e-14 83.2 78 50.0
AUR62001157 Chenopodium quinoa HOM05D000032 ORTHO05D009383 1.9e-14 82.8 73 53.4
CARHR074860 Cardamine hirsuta HOM05D000032 ORTHO05D009383 3.3e-14 82.0 59 59.3
Aa31LG5G11250 Aethionema arabicum HOM05D000032 ORTHO05D009383 4.3e-14 81.6 58 60.3
ATR0824G065 Amborella trichopoda HOM05D000032 ORTHO05D009383 5.6e-14 81.3 73 52.1
Thhalv10020567m.g Eutrema salsugineum HOM05D000032 ORTHO05D009383 7.3e-14 80.9 58 62.1
Mapoly0135s0036 Marchantia polymorpha HOM05D000032 ORTHO05D009383 7.3e-14 80.9 73 56.2
SGA_v2.0_scaffold8G04635 Striga asiatica HOM05D000032 ORTHO05D009383 7.3e-14 80.9 72 51.4
Sp3g00020 Schrenkiella parvula HOM05D000032 ORTHO05D009383 2.1e-13 79.3 58 60.3
SHI50144 Sapria himalayana HOM05D000032 ORTHO05D009383 8.1e-13 77.4 95 43.2
FAN05G0348 Fragaria x ananassa HOM05D000032 ORTHO05D009383 1.4e-12 76.6 60 61.7
QL03p074042 Quercus lobata HOM05D000622 ORTHO05D000475 6.8e-12 74.3 51 78.4
QL03p074423 Quercus lobata HOM05D000622 ORTHO05D000475 6.8e-12 74.3 51 78.4
Pp3c8_12050 Physcomitrium patens HOM05D000032 ORTHO05D009383 2.6e-11 72.4 73 46.6
SMO201G0222 Selaginella moellendorffii HOM05D000032 ORTHO05D009383 5.8e-11 71.2 71 45.1
AagrBONN_evm.TU.Sc2ySwM_369.192 Anthoceros agrestis HOM05D000032 ORTHO05D009383 1.3e-10 70.1 70 47.1
CBR_g3873 Chara braunii HOM05D000032 ORTHO05D009383 2.4e-09 65.9 68 41.2
CiPaw.14G093500 Carya illinoinensis HOM05D000032 ORTHO05D009383 1.0e-07 60.5 49 61.2
FAN08G2420 Fragaria x ananassa HOM05D000032 ORTHO05D002561 3.9e-07 58.5 57 43.9
FAN18G3796 Fragaria x ananassa HOM05D000032 ORTHO05D002561 3.9e-07 58.5 57 43.9
PGR055G0004 Punica granatum HOM05D000032 ORTHO05D002561 3.9e-07 58.5 57 45.6
PGR083G2332 Punica granatum HOM05D000032 ORTHO05D002561 3.9e-07 58.5 57 45.6
RcHm_v2.0_Chr7g0192711 Rosa chinensis HOM05D000032 ORTHO05D002561 3.9e-07 58.5 57 43.9
GSVIVG01007666001 Vitis vinifera HOM05D000032 ORTHO05D002561 8.6e-07 57.4 57 42.1
Aqoxy1G00425 Aquilegia oxysepala HOM05D000032 ORTHO05D001620 1.1e-06 57.0 51 47.1
Cfa019205 Carpinus fangiana HOM05D000032 ORTHO05D002561 1.1e-06 57.0 57 40.4
Lj4g0020387 Lotus japonicus HOM05D000032 ORTHO05D002561 1.1e-06 57.0 57 42.1
Ah.02g110670 Amaranthus hybridus HOM05D000032 ORTHO05D002561 1.9e-06 56.2 57 42.1
Lj9A443T63 Lonicera japonica HOM05D000032 ORTHO05D002561 1.9e-06 56.2 57 42.1
Oeu036513.2 Olea europaea HOM05D000032 ORTHO05D002561 1.9e-06 56.2 57 43.9
Atru.chr8.1195 Acer truncatum HOM05D000032 ORTHO05D001620 2.5e-06 55.8 53 45.3
AL8G40180 Arabidopsis lyrata HOM05D000032 ORTHO05D002561 2.5e-06 55.8 57 40.4
EL10Ac5g10666 Beta vulgaris HOM05D000032 ORTHO05D002561 2.5e-06 55.8 57 43.9
Cre16.g676400 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D005217 2.5e-06 55.8 53 41.5
Peaxi162Scf00089g01436 Petunia axillaris HOM05D000032 ORTHO05D002561 2.5e-06 55.8 57 45.6
Sabra12G0060800 Salix brachista HOM05D000032 ORTHO05D002561 2.5e-06 55.8 57 45.6
Aa31LG1G18860 Aethionema arabicum HOM05D000032 ORTHO05D002561 3.3e-06 55.5 76 38.2
DCAR_024336 Daucus carota HOM05D000032 ORTHO05D001620 3.3e-06 55.5 51 45.1
MD14G1172400 Malus domestica HOM05D000032 ORTHO05D002561 3.3e-06 55.5 57 40.4
Ah.10g032290 Amaranthus hybridus HOM05D000622 ORTHO05D000475 4.3e-06 55.1 40 70.0
MSTRG.3358 Avicennia marina HOM05D000622 ORTHO05D000475 4.3e-06 55.1 39 71.8
BcaB04g19938 Brassica carinata HOM05D000032 ORTHO05D002561 4.3e-06 55.1 57 40.4
BcaC04g23360 Brassica carinata HOM05D000032 ORTHO05D002561 4.3e-06 55.1 57 40.4
A09p08120 Brassica napus HOM05D000032 ORTHO05D002561 4.3e-06 55.1 57 40.4
C09p09180 Brassica napus HOM05D000032 ORTHO05D002561 4.3e-06 55.1 57 40.4
BolC9t53831H Brassica oleracea HOM05D000032 ORTHO05D002561 4.3e-06 55.1 57 40.4
BraA09t36463Z Brassica rapa HOM05D000032 ORTHO05D002561 4.3e-06 55.1 57 40.4
Glyma.05G041000 Glycine max HOM05D000032 ORTHO05D002561 4.3e-06 55.1 57 40.4
Os11g0599500 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D001620 4.3e-06 55.1 51 45.1
Sed0007859 Sechium edule HOM05D000032 ORTHO05D001620 4.3e-06 55.1 51 45.1
SEGI_13090 Sequoiadendron giganteum HOM05D000032 ORTHO05D001620 4.3e-06 55.1 51 45.1
CiPaw.13G174700 Carya illinoinensis HOM05D000032 ORTHO05D001620 5.6e-06 54.7 51 45.1
Migut.J01870 Erythranthe guttata HOM05D000032 ORTHO05D001620 5.6e-06 54.7 51 47.1
Thhalv10003871m.g Eutrema salsugineum HOM05D000032 ORTHO05D002561 5.6e-06 54.7 57 40.4
Phvul.003G204200 Phaseolus vulgaris HOM05D000032 ORTHO05D002561 5.6e-06 54.7 57 40.4
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 7.3e-06 54.3 51 41.2
Carub.0008s2387 Capsella rubella HOM05D000032 ORTHO05D002561 7.3e-06 54.3 57 40.4
CiPaw.09G027100 Carya illinoinensis HOM05D000032 ORTHO05D001620 7.3e-06 54.3 53 41.5
Eucgr.B03621 Eucalyptus grandis HOM05D000032 ORTHO05D001620 7.3e-06 54.3 51 45.1
Eucgr.L03255 Eucalyptus grandis HOM05D000032 ORTHO05D009383 7.3e-06 54.3 45 55.6
PSO067G0018 Papaver somniferum HOM05D000032 ORTHO05D002561 7.3e-06 54.3 57 40.4
PSO111G0052 Papaver somniferum HOM05D000032 ORTHO05D002561 7.3e-06 54.3 57 40.4
QL01p008067 Quercus lobata HOM05D000032 ORTHO05D001620 7.3e-06 54.3 51 45.1
TWI39G0188 Tripterygium wilfordii HOM05D000032 ORTHO05D002561 7.3e-06 54.3 57 40.4
vmacro16641 Vaccinium macrocarpon HOM05D000032 ORTHO05D002561 7.3e-06 54.3 57 40.4
CSS0005487 Camellia sinensis var. sinensis HOM05D000622 ORTHO05D000475 9.5e-06 53.9 39 71.8
CARHR168960 Cardamine hirsuta HOM05D000032 ORTHO05D001620 9.5e-06 53.9 51 43.1
Cfa009605 Carpinus fangiana HOM05D000032 ORTHO05D001620 9.5e-06 53.9 51 45.1
Ca_14269_v3 Cicer arietinum L. HOM05D000032 ORTHO05D002561 9.5e-06 53.9 57 38.6
Haze_22976 Corylus avellana HOM05D000032 ORTHO05D001620 9.5e-06 53.9 51 45.1
Duzib068G0241 Durio zibethinus HOM05D000032 ORTHO05D002561 9.5e-06 53.9 57 38.6
Migut.K00017 Erythranthe guttata HOM05D000032 ORTHO05D001620 9.5e-06 53.9 51 43.1
MD03G1007400 Malus domestica HOM05D000032 ORTHO05D001620 9.5e-06 53.9 51 43.1
Medtr4g105100 Medicago truncatula HOM05D000032 ORTHO05D002561 9.5e-06 53.9 57 40.4
PSO339G0392 Papaver somniferum HOM05D000032 ORTHO05D001620 9.5e-06 53.9 51 43.1
PSO384G1002 Papaver somniferum HOM05D000032 ORTHO05D001620 9.5e-06 53.9 51 43.1
Rhsim01G0185100 Rhododendron simsii HOM05D000032 ORTHO05D001620 9.5e-06 53.9 51 43.1
TPR.G37455 Trifolium pratense HOM05D000032 ORTHO05D002561 9.5e-06 53.9 57 40.4


User provided reference genes

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