Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p013792 Quercus lobata HOM05D004807 ORTHO05D005915 2.5e-36 154.8 75 100.0
MSTRG.19928 Avicennia marina HOM05D004807 ORTHO05D005915 1.1e-10 69.7 67 55.2
Migut.J01878 Erythranthe guttata HOM05D004807 ORTHO05D005915 1.1e-10 69.7 67 55.2
SalBow6G5976 Salvia bowleyana HOM05D004807 ORTHO05D005915 1.1e-10 69.7 67 53.7
vmacro12557 Vaccinium macrocarpon HOM05D004807 ORTHO05D005915 1.1e-10 69.7 71 53.5
Manes.08G040000 Manihot esculenta HOM05D004807 ORTHO05D005915 1.8e-10 68.9 71 52.1
Rhsim03G0002200 Rhododendron simsii HOM05D004807 ORTHO05D005915 1.8e-10 68.9 71 52.1
Rhsim03G0002400 Rhododendron simsii HOM05D004807 ORTHO05D005915 2.4e-10 68.6 71 52.1
Lj1A1135G80 Lonicera japonica HOM05D004807 ORTHO05D005915 3.1e-10 68.2 71 52.1
Oeu046734.3 Olea europaea HOM05D004807 ORTHO05D005915 3.1e-10 68.2 67 52.2
GSVIVG01033428001 Vitis vinifera HOM05D004807 ORTHO05D005915 4.1e-10 67.8 71 52.1
Nn7g35896 Nelumbo nucifera HOM05D004807 ORTHO05D005915 5.3e-10 67.4 71 52.1
Potri.006G197200 Populus trichocarpa HOM05D004807 ORTHO05D005915 5.3e-10 67.4 67 53.7
TAR623G0137 Trochodendron aralioides HOM05D004807 ORTHO05D005915 9.1e-10 66.6 71 50.7
Thecc.05G180400 Theobroma cacao HOM05D004807 ORTHO05D005915 1.2e-09 66.2 67 50.7
Cfa020114 Carpinus fangiana HOM05D004807 ORTHO05D005915 1.6e-09 65.9 71 50.7
CiPaw.09G026200 Carya illinoinensis HOM05D004807 ORTHO05D005915 1.6e-09 65.9 71 52.1
Psat0s2035g0040 Pisum sativum HOM05D004807 ORTHO05D005915 1.6e-09 65.9 71 49.3
QL07p025555 Quercus lobata HOM05D004807 ORTHO05D005915 1.6e-09 65.9 71 52.1
PSO170G3481 Papaver somniferum HOM05D004807 ORTHO05D005915 2.7e-09 65.1 66 53.0
PGR142G0165 Punica granatum HOM05D004807 ORTHO05D005915 2.7e-09 65.1 71 47.9
Sabra06G0151700 Salix brachista HOM05D004807 ORTHO05D005915 2.7e-09 65.1 71 50.7
Aqoxy1G00442 Aquilegia oxysepala HOM05D004807 ORTHO05D005915 3.5e-09 64.7 66 53.0
Lalb_Chr25g0287671 Lupinus albus HOM05D004807 ORTHO05D005915 3.5e-09 64.7 67 50.7
SEGI_25187 Sequoiadendron giganteum HOM05D004807 ORTHO05D005915 3.5e-09 64.7 71 50.7
CAN.G128.57 Capsicum annuum HOM05D004807 ORTHO05D005915 4.5e-09 64.3 67 47.8
Nitab4.5_0001079g0110 Nicotiana tabacum HOM05D004807 ORTHO05D005915 4.5e-09 64.3 67 49.3
TPR.G32304 Trifolium pratense HOM05D004807 ORTHO05D005915 4.5e-09 64.3 67 49.3
Ca_09097_v3 Cicer arietinum L. HOM05D004807 ORTHO05D005915 5.9e-09 63.9 71 47.9
Gohir.A09G130500 Gossypium hirsutum HOM05D004807 ORTHO05D005915 5.9e-09 63.9 71 49.3
Gohir.D09G126500 Gossypium hirsutum HOM05D004807 ORTHO05D005915 5.9e-09 63.9 71 49.3
Gorai.006G145300 Gossypium raimondii HOM05D004807 ORTHO05D005915 5.9e-09 63.9 71 49.3
Solyc10g080630.2 Solanum lycopersicum HOM05D004807 ORTHO05D005915 5.9e-09 63.9 67 47.8
Sopen10g031170 Solanum pennellii HOM05D004807 ORTHO05D005915 5.9e-09 63.9 67 47.8
AL3G23560 Arabidopsis lyrata HOM05D004807 ORTHO05D005915 7.7e-09 63.5 76 47.4
BcaC05g29309 Brassica carinata HOM05D004807 ORTHO05D005915 7.7e-09 63.5 67 52.2
BolC5t34266H Brassica oleracea HOM05D004807 ORTHO05D005915 7.7e-09 63.5 67 52.2
CSS0045552 Camellia sinensis var. sinensis HOM05D004807 ORTHO05D005915 7.7e-09 63.5 71 47.9
Carub.0003s1129 Capsella rubella HOM05D004807 ORTHO05D005915 7.7e-09 63.5 71 49.3
ClCG10G017810 Citrullus lanatus HOM05D004807 ORTHO05D005915 7.7e-09 63.5 71 49.3
Eucgr.K01882 Eucalyptus grandis HOM05D004807 ORTHO05D005915 7.7e-09 63.5 71 47.9
Glyma.19G204200 Glycine max HOM05D004807 ORTHO05D005915 7.7e-09 63.5 71 50.7
Nitab4.5_0005684g0020 Nicotiana tabacum HOM05D004807 ORTHO05D005915 7.7e-09 63.5 67 49.3
MELO3C009593.2 Cucumis melo HOM05D004807 ORTHO05D005915 1.0e-08 63.2 71 49.3
CsaV3_3G038490 Cucumis sativus L. HOM05D004807 ORTHO05D005915 1.0e-08 63.2 71 49.3
PSO528G0235 Papaver somniferum HOM05D004807 ORTHO05D005915 1.0e-08 63.2 66 51.5
Medtr7g107350 Medicago truncatula HOM05D004807 ORTHO05D005915 1.3e-08 62.8 67 47.8
Atru.chr8.1221 Acer truncatum HOM05D004807 ORTHO05D005915 1.7e-08 62.4 71 47.9
Glyma.03G206600 Glycine max HOM05D004807 ORTHO05D005915 1.7e-08 62.4 71 47.9
Lj1g0016427 Lotus japonicus HOM05D004807 ORTHO05D005915 1.7e-08 62.4 71 47.9
Os07g0203700 Oryza sativa ssp. japonica HOM05D004807 ORTHO05D005915 1.7e-08 62.4 72 45.8
FAN14G4845 Fragaria x ananassa HOM05D004807 ORTHO05D005915 2.2e-08 62.0 71 49.3
Phvul.001G200200 Phaseolus vulgaris HOM05D004807 ORTHO05D005915 2.2e-08 62.0 71 47.9
VMungo1383G3705 Vigna mungo HOM05D004807 ORTHO05D005915 2.2e-08 62.0 71 47.9
Actinidia22072 Actinidia chinensis HOM05D004807 ORTHO05D005915 2.9e-08 61.6 71 46.5
Aa31LG3G5560 Aethionema arabicum HOM05D004807 ORTHO05D005915 2.9e-08 61.6 71 47.9
DCAR_017047 Daucus carota HOM05D004807 ORTHO05D005915 2.9e-08 61.6 67 44.8
Peaxi162Scf00249g00811 Petunia axillaris HOM05D004807 ORTHO05D005915 2.9e-08 61.6 67 47.8
AT3G11960 Arabidopsis thaliana HOM05D004807 ORTHO05D005915 3.8e-08 61.2 76 46.1
arahy.Tifrunner.gnm1.ann1.14IR3Z Arachis hypogaea HOM05D004807 ORTHO05D005915 3.8e-08 61.2 71 49.3
arahy.Tifrunner.gnm1.ann1.4PIV4R Arachis hypogaea HOM05D004807 ORTHO05D005915 3.8e-08 61.2 71 49.3
FvH4_6g21460 Fragaria vesca HOM05D004807 ORTHO05D005915 3.8e-08 61.2 71 49.3
FAN02G2347 Fragaria x ananassa HOM05D004807 ORTHO05D005915 3.8e-08 61.2 71 49.3
FAN05G1427 Fragaria x ananassa HOM05D004807 ORTHO05D005915 3.8e-08 61.2 71 49.3
FAN05G3467 Fragaria x ananassa HOM05D004807 ORTHO05D005915 3.8e-08 61.2 71 49.3
Ah.04g153050 Amaranthus hybridus HOM05D004807 ORTHO05D005915 5.0e-08 60.8 67 43.3
COL.COLO4_29436 Corchorus olitorius HOM05D004807 ORTHO05D005915 5.0e-08 60.8 71 46.5
FAN09G2962 Fragaria x ananassa HOM05D004807 ORTHO05D005915 5.0e-08 60.8 71 49.3
Lsat_1_v5_gn_2_58060 Lactuca sativa HOM05D004807 ORTHO05D005915 5.0e-08 60.8 71 49.3
Prupe.7G085900 Prunus persica HOM05D004807 ORTHO05D005915 5.0e-08 60.8 71 47.9
HPP92_017552 Vanilla planifolia HOM05D004807 ORTHO05D005915 5.0e-08 60.8 68 50.0
BcaB04g18703 Brassica carinata HOM05D004807 ORTHO05D005915 6.5e-08 60.5 71 49.3
BcaC01g04068 Brassica carinata HOM05D004807 ORTHO05D005915 6.5e-08 60.5 71 49.3
A03p37390 Brassica napus HOM05D004807 ORTHO05D005915 6.5e-08 60.5 71 49.3
C03p45390 Brassica napus HOM05D004807 ORTHO05D005915 6.5e-08 60.5 71 49.3
BolC3t16806H Brassica oleracea HOM05D004807 ORTHO05D005915 6.5e-08 60.5 71 49.3
BraA03t12900Z Brassica rapa HOM05D004807 ORTHO05D005915 6.5e-08 60.5 71 49.3
CANSAT64G1965 Cannabis sativa HOM05D004807 ORTHO05D005915 6.5e-08 60.5 71 46.5
AUR62015288 Chenopodium quinoa HOM05D004807 ORTHO05D005915 6.5e-08 60.5 71 45.1
AUR62026870 Chenopodium quinoa HOM05D004807 ORTHO05D005915 6.5e-08 60.5 71 45.1
AUR62032732 Chenopodium quinoa HOM05D004807 ORTHO05D005915 6.5e-08 60.5 71 45.1
RcHm_v2.0_Chr3g0478641 Rosa chinensis HOM05D004807 ORTHO05D005915 6.5e-08 60.5 71 47.9
Ciclev10011020m.g Citrus clementina HOM05D004807 ORTHO05D005915 8.5e-08 60.1 64 48.4
MD14G1049600 Malus domestica HOM05D004807 ORTHO05D005915 8.5e-08 60.1 67 47.8
Sed0007842 Sechium edule HOM05D004807 ORTHO05D005915 8.5e-08 60.1 71 46.5
ATR0665G460 Amborella trichopoda HOM05D004807 ORTHO05D005915 1.5e-07 59.3 74 45.9
Cpa.g.sc85.18 Carica papaya HOM05D004807 ORTHO05D005915 1.5e-07 59.3 67 46.3
Sc19g0006260 Simmondsia chinensis HOM05D004807 ORTHO05D005915 1.5e-07 59.3 67 44.8
SMO276G0043 Selaginella moellendorffii HOM05D004807 ORTHO05D005915 1.9e-07 58.9 60 50.0
ECA238G3196 Erigeron canadensis HOM05D004807 ORTHO05D005915 4.2e-07 57.8 71 46.5
TWI74G1245 Tripterygium wilfordii HOM05D004807 ORTHO05D005915 5.5e-07 57.4 71 43.7
HanXRQChr14g0438891 Helianthus annuus HOM05D004807 ORTHO05D005915 7.2e-07 57.0 71 43.7
Hund19221 Selenicereus undatus HOM05D004807 ORTHO05D005915 7.2e-07 57.0 71 45.1
unitig_0.g511 Utricularia gibba HOM05D004807 ORTHO05D005915 7.2e-07 57.0 63 47.6
CDE05G3662 Ceratophyllum demersum HOM05D004807 ORTHO05D005915 1.6e-06 55.8 69 44.9


User provided reference genes

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