Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 3.8e-254 880.9 423 100.0
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 1.7e-233 812.4 423 92.7
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 4.1e-232 807.7 423 92.0
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.9e-229 798.9 423 90.8
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 9.4e-229 796.6 423 89.6
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 4.7e-228 794.3 423 89.4
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 1.4e-227 792.7 423 89.1
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 3.0e-227 791.6 423 89.1
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 4.0e-227 791.2 423 88.9
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 6.7e-227 790.4 423 88.9
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 1.2e-226 789.6 423 89.4
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 1.5e-226 789.3 423 89.1
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 2.0e-226 788.9 423 88.9
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 2.0e-226 788.9 418 89.5
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 2.6e-226 788.5 423 88.7
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 5.7e-226 787.3 423 88.7
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.3e-225 786.2 424 88.2
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 1.7e-225 785.8 423 88.7
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 2.8e-225 785.0 423 88.4
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 2.8e-225 785.0 423 88.4
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 3.7e-225 784.6 424 88.0
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.8e-225 784.3 424 88.0
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 8.2e-225 783.5 424 87.7
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 1.1e-224 783.1 423 88.9
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.8e-224 782.3 423 88.7
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 1.8e-224 782.3 423 89.1
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 1.8e-224 782.3 423 88.4
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 3.1e-224 781.6 423 88.9
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 3.1e-224 781.6 423 88.2
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 4.1e-224 781.2 423 88.4
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 5.3e-224 780.8 423 87.9
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 1.6e-223 779.2 416 89.2
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 2.7e-223 778.5 425 88.0
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 3.5e-223 778.1 423 87.5
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 5.9e-223 777.3 423 87.7
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 1.0e-222 776.5 425 87.3
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 1.3e-222 776.2 426 88.7
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.3e-222 776.2 423 87.0
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.3e-222 776.2 425 88.0
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 1.7e-222 775.8 423 87.0
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.7e-222 775.8 422 87.7
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 3.8e-222 774.6 423 87.9
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 5.0e-222 774.2 423 87.0
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 5.0e-222 774.2 427 88.1
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 5.0e-222 774.2 422 88.2
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 5.0e-222 774.2 423 87.5
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 8.5e-222 773.5 423 86.5
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 1.1e-221 773.1 423 87.5
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.5e-221 772.7 422 88.2
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 1.9e-221 772.3 423 86.8
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 2.5e-221 771.9 422 87.7
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 4.2e-221 771.2 423 87.0
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 9.4e-221 770.0 422 86.7
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 9.4e-221 770.0 447 83.7
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.2e-220 769.6 423 86.5
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 2.1e-220 768.8 423 86.5
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 6.1e-220 767.3 422 87.4
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 6.1e-220 767.3 423 85.6
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 8.0e-220 766.9 423 86.5
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 1.0e-219 766.5 423 85.8
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.8e-219 765.8 423 86.5
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 2.3e-219 765.4 423 85.8
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 4.0e-219 764.6 423 85.8
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 5.2e-219 764.2 423 85.3
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 5.2e-219 764.2 418 87.1
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.2e-218 763.1 423 85.3
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 2.0e-218 762.3 414 87.9
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 4.4e-218 761.1 453 81.7
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 7.5e-218 760.4 423 86.1
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 1.7e-217 759.2 423 85.8
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 2.8e-217 758.4 423 85.6
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 3.7e-217 758.1 423 86.5
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 8.3e-217 756.9 423 85.3
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 1.4e-216 756.1 417 86.8
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 2.4e-216 755.4 423 84.9
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 7.0e-216 753.8 423 84.9
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.2e-215 753.1 423 84.4
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 2.7e-215 751.9 424 85.4
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 4.5e-215 751.1 403 91.1
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.0e-214 750.0 423 83.9
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 1.3e-214 749.6 423 84.6
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 1.7e-214 749.2 423 84.6
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.5e-213 745.3 423 85.3
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.2e-213 745.0 423 84.2
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 4.2e-213 744.6 418 85.4
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.1e-212 742.3 419 84.5
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 6.1e-212 740.7 423 82.5
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 1.4e-211 739.6 431 82.1
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.7e-209 732.6 423 81.3
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.8e-209 731.9 421 82.2
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 4.9e-209 731.1 423 81.6
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 4.1e-208 728.0 423 81.3
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 7.0e-208 727.2 421 81.7
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 1.6e-207 726.1 423 81.8
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 7.8e-207 723.8 425 82.6
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 2.3e-206 722.2 424 83.3
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 1.5e-205 719.5 423 82.3
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.0e-203 713.4 423 80.6
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 9.8e-202 706.8 423 83.7
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 6.4e-201 704.1 420 77.6
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.9e-197 692.6 417 79.1
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.4e-192 675.6 423 79.7
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.4e-192 675.6 414 78.3
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.1e-192 674.9 414 78.0
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 3.5e-191 671.8 420 75.7
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 3.9e-190 668.3 419 76.4
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 6.6e-190 667.5 423 75.7
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 2.1e-188 662.5 413 79.2
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 3.1e-187 658.7 424 74.1
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 5.8e-186 654.4 369 84.8
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 7.1e-184 647.5 423 75.2
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 3.5e-183 645.2 421 73.9
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 1.4e-179 633.3 434 76.3
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 8.4e-177 624.0 413 73.6
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 5.4e-176 621.3 472 68.4
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 1.1e-171 607.1 329 89.4
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 5.2e-171 604.7 417 70.5
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 4.9e-169 598.2 413 70.2
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 1.9e-168 596.3 413 69.5
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.3e-166 590.1 333 84.7
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 2.5e-165 585.9 423 71.2
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 4.0e-163 578.6 420 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.3e-158 562.8 413 66.1
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 8.7e-150 534.3 291 87.3
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.1e-147 527.3 423 64.3
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.1e-147 527.3 423 64.3
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 4.8e-132 475.3 308 75.6
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 6.5e-113 411.8 424 50.0
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 3.2e-104 382.9 346 61.3
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 4.1e-99 365.9 199 86.9
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 4.6e-66 256.1 134 88.1
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 7.3e-64 248.8 139 87.1
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 2.2e-60 237.3 132 87.9
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 1.7e-57 227.6 207 59.9
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.3e-56 223.0 202 59.4
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 2.1e-50 204.1 124 77.4
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 7.8e-50 202.2 136 71.3
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 2.8e-47 193.7 126 73.0
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 2.8e-47 193.7 126 73.0
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.2e-45 188.3 203 49.3
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 3.8e-44 183.3 115 73.9
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 3.8e-44 183.3 115 73.9
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 2.4e-43 180.6 95 85.3
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.4e-43 179.5 119 72.3
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 2.1e-42 177.6 118 71.2
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 2.1e-42 177.6 118 71.2
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 2.5e-40 170.6 93 79.6
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 1.5e-32 144.8 79 87.3
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.5e-32 144.8 76 85.5
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 9.7e-24 115.5 61 82.0
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.3e-23 115.2 60 85.0
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 1.3e-23 115.2 189 41.8
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 2.5e-16 90.9 62 71.0


User provided reference genes

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