Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p045785 Quercus lobata HOM05D000022 ORTHO05D000306 3.3e-52 208.0 99 100.0
QL09p045775 Quercus lobata HOM05D000022 ORTHO05D000306 4.4e-36 154.5 108 71.3
QL09p045759 Quercus lobata HOM05D000022 ORTHO05D000306 5.9e-33 144.1 108 68.5
QL09p045770 Quercus lobata HOM05D000022 ORTHO05D000306 1.3e-32 142.9 107 66.4
Cfa010361 Carpinus fangiana HOM05D000022 ORTHO05D000306 7.0e-26 120.6 107 56.1
Haze_03310 Corylus avellana HOM05D000022 ORTHO05D000306 7.0e-26 120.6 107 57.0
CiPaw.13G053800 Carya illinoinensis HOM05D000022 ORTHO05D000306 9.2e-26 120.2 107 57.0
CiPaw.14G042900 Carya illinoinensis HOM05D000022 ORTHO05D000306 4.6e-25 117.9 107 56.1
TWI18G1216 Tripterygium wilfordii HOM05D000022 ORTHO05D000306 4.6e-25 117.9 112 54.5
Ciclev10032523m.g Citrus clementina HOM05D000022 ORTHO05D000306 1.0e-24 116.7 107 56.1
Thecc.01G212600 Theobroma cacao HOM05D000022 ORTHO05D000306 3.9e-24 114.8 108 53.7
Gohir.A07G197100 Gossypium hirsutum HOM05D000022 ORTHO05D000306 1.9e-23 112.5 106 53.8
Gohir.D07G203500 Gossypium hirsutum HOM05D000022 ORTHO05D000306 2.5e-23 112.1 106 52.8
Lalb_Chr19g0126051 Lupinus albus HOM05D000022 ORTHO05D000306 1.2e-22 109.8 107 55.1
Lalb_Chr19g0126061 Lupinus albus HOM05D000022 ORTHO05D000306 1.2e-22 109.8 107 55.1
Gorai.001G229100 Gossypium raimondii HOM05D000022 ORTHO05D000306 1.6e-22 109.4 106 51.9
Prupe.8G192200 Prunus persica HOM05D000022 ORTHO05D000306 1.6e-22 109.4 108 53.7
Duzib211G0183 Durio zibethinus HOM05D000022 ORTHO05D000306 2.1e-22 109.0 104 51.9
Manes.12G052300 Manihot esculenta HOM05D000022 ORTHO05D000306 3.6e-22 108.2 104 51.0
PGR044G0497 Punica granatum HOM05D000022 ORTHO05D000306 6.2e-22 107.5 107 50.5
Dinv12803 Davidia involucrata HOM05D000022 ORTHO05D000306 1.1e-21 106.7 130 46.2
CANSAT01G1198 Cannabis sativa HOM05D000022 ORTHO05D000306 1.4e-21 106.3 112 48.2
CANSAT01G0781 Cannabis sativa HOM05D000022 ORTHO05D000306 2.3e-21 105.5 112 48.2
VMungo1383G2998 Vigna mungo HOM05D000022 ORTHO05D000306 4.0e-21 104.8 98 54.1
COL.COLO4_04503 Corchorus olitorius HOM05D000022 ORTHO05D000306 5.2e-21 104.4 113 47.8
Medtr7g052020 Medicago truncatula HOM05D000022 ORTHO05D000306 5.2e-21 104.4 93 55.9
arahy.Tifrunner.gnm1.ann1.642FWA Arachis hypogaea HOM05D000022 ORTHO05D000306 6.8e-21 104.0 106 50.9
arahy.Tifrunner.gnm1.ann1.L0VV9Y Arachis hypogaea HOM05D000022 ORTHO05D000306 6.8e-21 104.0 106 50.0
MD10G1153400 Malus domestica HOM05D000022 ORTHO05D000306 8.9e-21 103.6 109 51.4
Psat7g176080 Pisum sativum HOM05D000022 ORTHO05D000306 8.9e-21 103.6 93 54.8
TPR.G26811 Trifolium pratense HOM05D000022 ORTHO05D000306 1.5e-20 102.8 93 54.8
Glyma.18G152600 Glycine max HOM05D000022 ORTHO05D000306 2.0e-20 102.4 93 55.9
MD05G1163600 Malus domestica HOM05D000022 ORTHO05D000306 2.0e-20 102.4 115 51.3
COL.COLO4_04504 Corchorus olitorius HOM05D000022 ORTHO05D000306 2.6e-20 102.1 113 47.8
Hma1.2p1_0405F.1_g145880 Hydrangea macrophylla HOM05D000022 ORTHO05D000306 2.6e-20 102.1 110 46.4
BcaC06g30784 Brassica carinata HOM05D000022 ORTHO05D000306 3.4e-20 101.7 107 48.6
Phvul.008G135300 Phaseolus vulgaris HOM05D000022 ORTHO05D000306 3.4e-20 101.7 93 55.9
Phvul.008G160150 Phaseolus vulgaris HOM05D000022 ORTHO05D000306 3.4e-20 101.7 93 55.9
FAN27G0681 Fragaria x ananassa HOM05D000022 ORTHO05D000306 5.8e-20 100.9 114 47.4
Sp2g18900 Schrenkiella parvula HOM05D000022 ORTHO05D000306 5.8e-20 100.9 105 46.7
GSVIVG01005286001 Vitis vinifera HOM05D000022 ORTHO05D000306 7.5e-20 100.5 96 52.1
Nn1g08069 Nelumbo nucifera HOM05D000022 ORTHO05D000306 9.8e-20 100.1 93 54.8
Potri.002G249600 Populus trichocarpa HOM05D000022 ORTHO05D000306 1.3e-19 99.8 101 50.5
Lj1g0015302 Lotus japonicus HOM05D000022 ORTHO05D000306 1.7e-19 99.4 93 53.8
TAR633G0671 Trochodendron aralioides HOM05D000022 ORTHO05D000306 1.7e-19 99.4 100 52.0
Migut.N00658 Erythranthe guttata HOM05D000022 ORTHO05D000306 2.2e-19 99.0 94 52.1
FAN15G2137 Fragaria x ananassa HOM05D000022 ORTHO05D000306 2.2e-19 99.0 114 45.6
Oeu013413.1 Olea europaea HOM05D000022 ORTHO05D000306 2.2e-19 99.0 99 48.5
RcHm_v2.0_Chr6g0283211 Rosa chinensis HOM05D000022 ORTHO05D000306 2.2e-19 99.0 113 46.0
Eucgr.K02100 Eucalyptus grandis HOM05D000022 ORTHO05D000306 2.9e-19 98.6 97 53.6
GSVIVG01005284001 Vitis vinifera HOM05D000022 ORTHO05D000306 3.7e-19 98.2 93 52.7
AT5G48540 Arabidopsis thaliana HOM05D000022 ORTHO05D000306 4.9e-19 97.8 100 50.0
FvH4_2g17970 Fragaria vesca HOM05D000022 ORTHO05D000306 4.9e-19 97.8 114 44.7
FAN24G3230 Fragaria x ananassa HOM05D000022 ORTHO05D000306 4.9e-19 97.8 114 44.7
Hma1.2p1_0405F.1_g145870 Hydrangea macrophylla HOM05D000022 ORTHO05D000306 6.4e-19 97.4 98 50.0
Nitab4.5_0000038g0030 Nicotiana tabacum HOM05D000022 ORTHO05D000306 6.4e-19 97.4 99 52.5
CARHR183490 Cardamine hirsuta HOM05D000022 ORTHO05D000306 1.1e-18 96.7 118 44.1
Thhalv10005717m.g Eutrema salsugineum HOM05D000022 ORTHO05D000306 1.1e-18 96.7 118 44.1
Lj1P98T6 Lonicera japonica HOM05D000022 ORTHO05D000306 1.9e-18 95.9 105 49.5
AL8G21480 Arabidopsis lyrata HOM05D000022 ORTHO05D000306 3.2e-18 95.1 104 49.0
A06p39110 Brassica napus HOM05D000022 ORTHO05D000306 3.2e-18 95.1 118 43.2
C07p39230 Brassica napus HOM05D000022 ORTHO05D000306 3.2e-18 95.1 118 43.2
BolC7t44443H Brassica oleracea HOM05D000022 ORTHO05D000306 3.2e-18 95.1 118 43.2
BraA06t26825Z Brassica rapa HOM05D000022 ORTHO05D000306 3.2e-18 95.1 118 43.2
Lj1C95G0 Lonicera japonica HOM05D000022 ORTHO05D000306 3.2e-18 95.1 97 50.5
Sc05g0001790 Simmondsia chinensis HOM05D000022 ORTHO05D000306 3.2e-18 95.1 101 48.5
Solyc09g057960.1 Solanum lycopersicum HOM05D000022 ORTHO05D000306 4.1e-18 94.7 104 49.0
MSTRG.17974 Avicennia marina HOM05D000022 ORTHO05D000306 5.4e-18 94.4 94 46.8
Nitab4.5_0010147g0020 Nicotiana tabacum HOM05D000022 ORTHO05D000306 5.4e-18 94.4 104 48.1
Peaxi162Scf00054g00191 Petunia axillaris HOM05D000022 ORTHO05D000306 5.4e-18 94.4 99 50.5
TAR633G0069 Trochodendron aralioides HOM05D000022 ORTHO05D000306 5.4e-18 94.4 93 49.5
Lj1P99T5 Lonicera japonica HOM05D000022 ORTHO05D000306 7.0e-18 94.0 105 47.6
MBI19_g08509_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000306 7.0e-18 94.0 98 49.0
MBI19_g04408_MAGBIO Magnolia biondii HOM05D000022 ORTHO05D000306 1.2e-17 93.2 93 48.4
THA.LOC104802650 Tarenaya hassleriana HOM05D000022 ORTHO05D000306 1.6e-17 92.8 105 48.6
AUR62001196 Chenopodium quinoa HOM05D000022 ORTHO05D000306 2.0e-17 92.4 98 48.0
vmacro02809 Vaccinium macrocarpon HOM05D000022 ORTHO05D000306 2.0e-17 92.4 96 49.0
Actinidia23364 Actinidia chinensis HOM05D000022 ORTHO05D000306 2.7e-17 92.0 93 48.4
Lj1P99T6 Lonicera japonica HOM05D000022 ORTHO05D000306 2.7e-17 92.0 105 46.7
Carub.0008s0815 Capsella rubella HOM05D000022 ORTHO05D000306 3.5e-17 91.7 104 47.1
SalBow6G6871 Salvia bowleyana HOM05D000022 ORTHO05D000306 3.5e-17 91.7 94 47.9
AUR62022132 Chenopodium quinoa HOM05D000022 ORTHO05D000306 4.6e-17 91.3 98 46.9
Cc01_g16290 Coffea canephora HOM05D000022 ORTHO05D000306 4.6e-17 91.3 104 46.2
Rhsim13G0051900 Rhododendron simsii HOM05D000022 ORTHO05D000306 4.6e-17 91.3 111 46.8
RcHm_v2.0_Chr6g0283271 Rosa chinensis HOM05D000022 ORTHO05D000306 4.6e-17 91.3 98 48.0
CSS0016669 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 6.0e-17 90.9 94 46.8
Aa31sc459G10 Aethionema arabicum HOM05D000022 ORTHO05D000306 7.8e-17 90.5 92 48.9
EL10Ac7g17984 Beta vulgaris HOM05D000022 ORTHO05D000306 1.0e-16 90.1 99 45.5
PGSC0003DMG400041220 Solanum tuberosum HOM05D000022 ORTHO05D000306 1.0e-16 90.1 94 48.9
Oeu005343.1 Olea europaea HOM05D000022 ORTHO05D000306 2.3e-16 89.0 88 47.7
Lsat_1_v5_gn_9_13261 Lactuca sativa HOM05D000022 ORTHO05D000306 3.0e-16 88.6 91 48.4
C09p04860 Brassica napus HOM05D000022 ORTHO05D000306 5.0e-16 87.8 109 45.0
BolC9t53414H Brassica oleracea HOM05D000022 ORTHO05D000306 5.0e-16 87.8 109 45.0
Cc09_g09930 Coffea canephora HOM05D000022 ORTHO05D000306 5.0e-16 87.8 101 44.6
HanXRQChr10g0286771 Helianthus annuus HOM05D000022 ORTHO05D000306 1.9e-15 85.9 66 57.6
Hma1.2p1_2126F.1_g314580 Hydrangea macrophylla HOM05D000022 ORTHO05D000306 1.9e-15 85.9 45 77.8
SalBow6G0116 Salvia bowleyana HOM05D000022 ORTHO05D000306 2.5e-15 85.5 93 44.1
ECA247G3668 Erigeron canadensis HOM05D000022 ORTHO05D000306 1.6e-14 82.8 45 77.8
unitig_899.g15395 Utricularia gibba HOM05D000022 ORTHO05D000306 1.6e-14 82.8 104 41.3
Cc01_g16280 Coffea canephora HOM05D000022 ORTHO05D000306 2.1e-14 82.4 101 41.6
PSO675G7644 Papaver somniferum HOM05D000022 ORTHO05D000306 1.8e-13 79.3 91 44.0
BcaC04g23771 Brassica carinata HOM05D000022 ORTHO05D000306 2.3e-13 79.0 60 63.3
Migut.N00659 Erythranthe guttata HOM05D000022 ORTHO05D000306 3.1e-13 78.6 91 39.6
DCAR_004764 Daucus carota HOM05D000022 ORTHO05D000306 4.0e-13 78.2 106 35.8
Migut.D02470 Erythranthe guttata HOM05D000022 ORTHO05D000306 5.2e-13 77.8 45 68.9
PSO675G4418 Papaver somniferum HOM05D000022 ORTHO05D000306 1.2e-12 76.6 44 68.2
ATR0753G039 Amborella trichopoda HOM05D000022 ORTHO05D000306 1.5e-12 76.3 99 44.4
ATR0753G046 Amborella trichopoda HOM05D000022 ORTHO05D000306 1.5e-12 76.3 104 40.4
PSO017G1939 Papaver somniferum HOM05D000022 ORTHO05D000306 2.0e-12 75.9 43 67.4
PSO017G4875 Papaver somniferum HOM05D000022 ORTHO05D000306 2.0e-12 75.9 44 63.6
ATR0753G130 Amborella trichopoda HOM05D000022 ORTHO05D000306 5.8e-12 74.3 100 38.0
Nn1g08068 Nelumbo nucifera HOM05D000022 ORTHO05D000306 7.5e-12 73.9 94 38.3
PSO017G0393 Papaver somniferum HOM05D000022 ORTHO05D000306 7.5e-12 73.9 44 65.9
HanXRQChr08g0231691 Helianthus annuus HOM05D000022 ORTHO05D000306 1.3e-11 73.2 45 68.9
SGA_v2.0_scaffold77G25291 Striga asiatica HOM05D000022 ORTHO05D000306 3.7e-11 71.6 98 40.8
Os03g0277700 Oryza sativa ssp. japonica HOM05D000022 ORTHO05D000306 6.4e-11 70.9 49 57.1
PSO017G0171 Papaver somniferum HOM05D000022 ORTHO05D000306 8.3e-11 70.5 39 69.2
HanXRQChr08g0231681 Helianthus annuus HOM05D000022 ORTHO05D000306 2.4e-10 68.9 69 42.0
Os05g0112800 Oryza sativa ssp. japonica HOM05D000022 ORTHO05D000306 5.4e-10 67.8 44 63.6
Os03g0277600 Oryza sativa ssp. japonica HOM05D000022 ORTHO05D000306 2.1e-09 65.9 52 50.0
Os08g0136800 Oryza sativa ssp. japonica HOM05D000022 ORTHO05D000306 4.6e-09 64.7 50 50.0
Os08g0136300 Oryza sativa ssp. japonica HOM05D000022 ORTHO05D000306 6.0e-09 64.3 50 52.0
Zm00001eb266690 Zea mays HOM05D000022 ORTHO05D000306 6.0e-09 64.3 43 60.5
Os08g0136700 Oryza sativa ssp. japonica HOM05D000022 ORTHO05D000306 1.0e-08 63.5 50 48.0
Zm00001eb012570 Zea mays HOM05D000022 ORTHO05D000306 1.3e-08 63.2 45 55.6
Os08g0136500 Oryza sativa ssp. japonica HOM05D000022 ORTHO05D000306 2.3e-08 62.4 44 54.5
HanXRQChr03g0065301 Helianthus annuus HOM05D000022 ORTHO05D000306 3.0e-08 62.0 37 64.9
Migut.B01016 Erythranthe guttata HOM05D000022 ORTHO05D000306 5.1e-08 61.2 45 57.8
Cc00_g00710 Coffea canephora HOM05D000022 ORTHO05D000306 6.6e-08 60.8 101 32.7
HanXRQChr08g0231671 Helianthus annuus HOM05D000022 ORTHO05D000306 1.5e-07 59.7 45 46.7
HanXRQChr08g0231231 Helianthus annuus HOM05D000022 ORTHO05D000306 4.3e-07 58.2 45 46.7
VMungo1383G1694 Vigna mungo HOM05D000022 ORTHO05D010537 5.6e-07 57.8 55 41.8
HPP92_003377 Vanilla planifolia HOM05D000022 ORTHO05D000306 9.5e-07 57.0 40 57.5
HPP92_003379 Vanilla planifolia HOM05D000022 ORTHO05D000306 9.5e-07 57.0 40 57.5
HPP92_003380 Vanilla planifolia HOM05D000022 ORTHO05D000306 9.5e-07 57.0 40 57.5
QL12p029668 Quercus lobata HOM05D000022 ORTHO05D000071 1.2e-06 56.6 40 57.5
arahy.Tifrunner.gnm1.ann1.4BBW7G Arachis hypogaea HOM05D000022 ORTHO05D010537 1.6e-06 56.2 60 46.7
arahy.Tifrunner.gnm1.ann1.D83SSP Arachis hypogaea HOM05D000022 ORTHO05D010537 1.6e-06 56.2 60 46.7
Phvul.008G077500 Phaseolus vulgaris HOM05D000022 ORTHO05D010537 1.6e-06 56.2 58 39.7
Glyma.16G202100 Glycine max HOM05D000022 ORTHO05D010537 3.6e-06 55.1 40 52.5
CSS0010768 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000071 4.7e-06 54.7 42 52.4
Rhsim13G0161900 Rhododendron simsii HOM05D000022 ORTHO05D000306 6.2e-06 54.3 39 53.8
A01p33070 Brassica napus HOM05D000022 ORTHO05D010289 8.1e-06 53.9 48 47.9
BraA01t03429Z Brassica rapa HOM05D000022 ORTHO05D010289 8.1e-06 53.9 48 47.9
Lj2g0007740 Lotus japonicus HOM05D000022 ORTHO05D000071 8.1e-06 53.9 48 45.8
Phvul.004G124900 Phaseolus vulgaris HOM05D000022 ORTHO05D010537 8.1e-06 53.9 53 41.5


User provided reference genes

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