Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 0.0e+00 1897.5 985 100.0
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1327.0 994 71.8
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1321.6 994 71.7
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1280.8 985 70.6
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1240.7 1005 67.4
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1223.4 999 66.8
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1221.8 994 66.0
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1221.8 999 66.7
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1214.5 994 66.8
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1211.4 999 66.1
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1197.6 994 65.2
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1189.9 983 64.6
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1184.9 988 65.3
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1184.5 997 65.3
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1183.3 981 64.7
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1181.4 1002 64.7
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1179.9 995 64.6
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1179.9 980 64.9
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1178.3 995 64.5
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1174.8 1003 62.9
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1169.5 1005 63.1
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1166.0 987 63.4
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 0.0e+00 1163.3 984 64.0
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1159.4 993 64.0
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1157.5 1004 62.5
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1154.8 1003 63.0
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1147.1 994 62.4
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1146.3 980 62.6
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1143.6 1003 62.8
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 0.0e+00 1136.7 986 63.5
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1133.6 989 62.3
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1131.3 1000 61.8
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 0.0e+00 1127.1 982 62.0
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 0.0e+00 1124.4 1001 62.3
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1122.1 1006 61.2
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 0.0e+00 1121.7 987 61.5
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1103.2 990 60.4
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 0.0e+00 1099.7 984 61.1
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1096.3 1000 59.6
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1092.8 985 59.8
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1090.1 999 59.7
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 0.0e+00 1084.7 977 61.9
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 0.0e+00 1079.3 1000 57.9
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 6.1e-311 1070.8 991 58.9
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 2.3e-310 1068.9 981 58.9
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 3.0e-310 1068.5 978 58.8
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 3.3e-309 1065.1 989 59.2
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 1.6e-308 1062.8 960 60.0
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 3.7e-308 1061.6 988 59.0
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 8.1e-308 1060.4 964 59.2
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 3.8e-305 1051.6 974 57.3
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 6.4e-305 1050.8 989 58.2
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 6.4e-305 1050.8 980 57.6
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 1.9e-304 1049.3 991 57.2
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 2.4e-304 1048.9 992 58.1
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 2.7e-303 1045.4 981 57.7
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 6.0e-303 1044.3 991 58.2
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 1.8e-302 1042.7 979 57.3
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 3.0e-302 1042.0 1001 56.5
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 1.1e-301 1040.0 899 63.6
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 1.5e-301 1039.6 983 58.2
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 1.3e-300 1036.6 1006 56.8
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 1.6e-300 1036.2 998 56.8
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 2.1e-300 1035.8 877 63.1
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 2.8e-300 1035.4 999 56.7
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 3.7e-300 1035.0 985 57.7
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 8.2e-300 1033.9 985 57.5
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 8.2e-300 1033.9 985 57.5
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.1e-299 1033.5 988 58.0
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 1.4e-299 1033.1 995 56.7
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 2.0e-298 1029.2 996 56.4
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 1.3e-297 1026.5 979 57.0
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 3.2e-296 1021.9 995 56.2
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 1.6e-292 1009.6 993 55.9
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 8.2e-292 1007.3 998 57.1
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 6.9e-291 1004.2 998 55.7
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 6.9e-291 1004.2 992 55.2
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 4.3e-285 984.9 812 64.3
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 1.2e-279 966.8 956 56.0
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.7e-276 956.4 988 55.2
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 2.8e-276 955.7 996 53.7
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 1.4e-275 953.4 854 61.0
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 1.2e-274 950.3 986 54.6
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 8.8e-270 934.1 986 53.9
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 5.9e-258 894.8 733 63.8
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 3.6e-255 885.6 983 50.3
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 8.8e-254 880.9 860 54.5
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 9.1e-251 870.9 990 51.4
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 1.1e-240 837.4 786 60.2
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.4e-229 799.3 734 61.6
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 3.2e-227 792.7 993 46.2
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 7.6e-205 718.4 488 73.0
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 6.9e-198 695.3 1001 42.2
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 1.2e-189 667.9 1022 41.0
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 1.8e-185 654.1 703 52.8
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 4.0e-182 642.9 913 41.4
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 2.4e-166 590.5 986 37.0
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 2.1e-162 577.4 421 67.5
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.0e-148 531.9 409 67.2
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 6.8e-137 492.7 924 34.8
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 1.5e-131 474.9 474 60.8
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 8.9e-129 465.7 950 33.4
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 9.8e-128 462.2 791 38.7
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 1.6e-125 454.9 973 31.9
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 4.9e-111 406.8 452 55.5
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.7e-109 401.0 428 55.4
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.6e-98 365.2 258 70.2
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 9.6e-83 312.8 199 74.9
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.0e-73 280.8 426 45.8
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.4e-41 176.0 341 40.5
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 7.0e-41 173.7 438 32.9
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.6e-40 171.8 144 61.1
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 4.5e-40 171.0 336 41.1
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.1e-30 139.8 381 31.5
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 4.0e-28 131.3 160 52.5
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.8e-26 124.4 125 54.4
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 3.4e-19 101.7 121 47.9
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 4.9e-18 97.8 112 54.5
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.4e-17 96.3 158 43.7
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 2.4e-17 95.5 67 70.1
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 3.1e-17 95.1 129 50.4
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.3e-15 89.7 86 58.1
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 5.0e-15 87.8 86 57.0
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 5.0e-15 87.8 86 57.0
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 6.6e-15 87.4 168 35.1
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 1.1e-14 86.7 86 57.0
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 2.5e-14 85.5 86 54.7
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.6e-14 84.3 114 47.4
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 8.0e-13 80.5 46 78.3
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 8.9e-12 77.0 60 76.7
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.5e-11 76.3 62 61.3
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 3.4e-11 75.1 69 50.7
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.4e-09 69.7 62 56.5
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 2.7e-08 65.5 38 78.9
Actinidia04704 Actinidia chinensis HOM05D004953 ORTHO05D006193 4.6e-08 64.7 232 28.4
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.0e-07 62.0 104 44.2
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 3.9e-07 61.6 68 51.5
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.9e-07 61.6 68 51.5
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.0e-07 61.2 38 73.7
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 5.0e-07 61.2 165 30.9


User provided reference genes

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