Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 7.8e-186 653.7 337 100.0
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 1.3e-164 583.2 342 86.3
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 5.5e-163 577.8 345 85.5
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 7.1e-163 577.4 352 84.1
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.6e-162 576.2 340 85.0
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.0e-161 573.5 346 85.5
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.9e-161 571.6 344 84.9
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 5.1e-161 571.2 345 84.6
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 5.1e-161 571.2 345 84.3
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 1.1e-160 570.1 368 80.7
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 1.5e-160 569.7 338 85.8
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 5.7e-160 567.8 341 83.9
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.1e-158 563.5 350 83.1
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.4e-158 563.1 341 83.6
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.4e-158 563.1 341 83.6
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 1.8e-158 562.8 322 87.3
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 3.1e-158 562.0 341 82.4
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 4.1e-158 561.6 341 83.0
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 5.3e-158 561.2 344 82.3
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 5.3e-158 561.2 348 83.0
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 5.3e-158 561.2 344 82.3
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 1.2e-157 560.1 344 82.3
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 2.0e-157 559.3 337 82.2
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 2.6e-157 558.9 341 81.8
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 4.5e-157 558.1 344 82.8
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 1.7e-156 556.2 352 82.1
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 3.8e-156 555.1 343 81.9
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 3.8e-156 555.1 341 82.1
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 6.5e-156 554.3 340 82.6
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 1.4e-155 553.1 350 81.1
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 3.2e-155 552.0 326 84.4
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 4.2e-155 551.6 344 81.1
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 5.5e-155 551.2 345 82.3
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 7.2e-155 550.8 344 81.7
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.2e-154 550.1 344 80.8
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 2.1e-154 549.3 317 87.1
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 2.1e-154 549.3 342 81.6
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 2.1e-154 549.3 342 81.9
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 2.7e-154 548.9 340 81.2
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 2.7e-154 548.9 329 84.8
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.7e-154 548.9 343 79.9
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 4.6e-154 548.1 337 80.7
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 6.1e-154 547.7 344 79.9
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 7.9e-154 547.4 349 80.5
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 7.9e-154 547.4 340 81.2
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 1.8e-153 546.2 340 81.8
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 5.1e-153 544.7 341 81.5
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 6.7e-153 544.3 346 79.8
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 6.7e-153 544.3 344 80.2
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.1e-152 543.5 342 80.4
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 1.1e-152 543.5 350 80.9
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 7.4e-152 540.8 342 80.1
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 9.7e-152 540.4 326 81.9
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 9.7e-152 540.4 332 82.5
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 1.3e-151 540.0 342 79.8
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.7e-151 539.7 323 83.0
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.7e-151 539.7 346 78.9
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 2.2e-151 539.3 342 79.5
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 3.7e-151 538.5 347 77.2
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 3.7e-151 538.5 339 79.9
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 6.3e-151 537.7 347 77.2
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 8.2e-151 537.3 344 79.9
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.1e-150 537.0 342 79.8
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 1.4e-150 536.6 340 79.4
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 1.4e-150 536.6 340 78.8
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 1.4e-150 536.6 347 80.1
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 1.8e-150 536.2 312 84.9
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.8e-150 536.2 339 79.9
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 2.4e-150 535.8 322 82.3
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 2.4e-150 535.8 342 77.8
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 3.1e-150 535.4 325 81.2
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 3.1e-150 535.4 343 78.4
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 4.1e-150 535.0 347 76.4
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 4.1e-150 535.0 345 79.4
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 4.1e-150 535.0 347 79.3
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 6.9e-150 534.3 339 78.8
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 9.1e-150 533.9 339 79.4
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 9.1e-150 533.9 347 76.1
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 9.1e-150 533.9 343 77.8
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 1.5e-149 533.1 340 77.9
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 2.0e-149 532.7 347 76.1
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 3.4e-149 531.9 345 77.7
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 1.0e-148 530.4 324 81.2
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 2.2e-148 529.3 338 79.3
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 2.2e-148 529.3 338 79.3
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 2.9e-148 528.9 329 80.2
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 6.5e-148 527.7 342 78.4
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 1.4e-147 526.6 339 79.4
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 1.4e-147 526.6 340 78.2
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 1.4e-147 526.6 347 77.2
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 1.4e-147 526.6 340 78.2
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 1.4e-147 526.6 347 77.2
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 1.4e-147 526.6 340 78.2
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 2.5e-147 525.8 361 75.1
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 5.5e-147 524.6 352 76.4
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 7.2e-147 524.2 327 80.1
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 7.2e-147 524.2 348 77.0
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 9.4e-147 523.9 340 77.6
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 1.6e-146 523.1 327 80.1
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 1.6e-146 523.1 330 79.4
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 2.1e-146 522.7 342 76.9
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 6.1e-146 521.2 329 79.3
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 1.4e-145 520.0 318 80.2
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 1.4e-145 520.0 323 79.9
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 3.0e-145 518.8 347 76.4
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 5.1e-145 518.1 343 77.0
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 5.1e-145 518.1 340 77.9
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 8.8e-145 517.3 322 80.1
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 5.3e-142 508.1 328 79.9
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 1.5e-141 506.5 383 70.5
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.6e-138 496.5 329 78.7
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 2.2e-135 486.1 343 72.3
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 1.2e-133 480.3 338 70.7
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 3.5e-133 478.8 347 72.9
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 1.7e-132 476.5 343 70.6
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 3.8e-132 475.3 346 72.8
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 3.8e-132 475.3 346 72.8
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 5.5e-131 471.5 338 71.9
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 9.8e-128 460.7 329 75.1
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 1.7e-127 459.9 335 70.4
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 8.3e-127 457.6 344 67.4
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.4e-126 456.8 314 71.0
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 3.1e-126 455.7 343 68.5
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 7.0e-126 454.5 298 75.2
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.6e-125 453.4 292 78.1
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.6e-125 453.4 292 78.1
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 2.0e-125 453.0 345 66.4
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.7e-125 452.6 314 70.4
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 2.7e-125 452.6 315 69.5
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 1.7e-124 449.9 347 65.7
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 6.1e-122 441.4 339 67.8
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 8.0e-122 441.0 343 67.1
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 8.8e-121 437.6 314 67.8
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 2.1e-114 416.4 271 77.1
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 8.3e-111 404.4 326 61.0
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 8.3e-111 404.4 317 62.8
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 1.1e-110 404.1 230 85.2
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.1e-110 402.1 321 62.6
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 1.6e-101 373.6 255 76.1
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.5e-99 367.1 229 78.2
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 9.2e-94 347.8 200 84.0
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 5.1e-84 315.5 297 55.9
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 4.0e-81 305.8 215 72.1
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 2.6e-80 303.1 248 64.1
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 1.3e-71 274.2 184 77.2
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.8e-65 253.8 182 65.9
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.8e-65 253.8 182 65.9
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.2e-62 242.7 164 70.1
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 3.7e-58 229.6 140 80.7
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 4.5e-56 222.6 130 82.3
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 1.3e-55 221.1 122 86.9
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 4.6e-53 212.6 122 79.5
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 8.4e-47 191.8 164 63.4
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 2.5e-46 190.3 164 64.0
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 5.1e-44 182.6 164 61.6
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.3e-36 157.1 127 61.4
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 3.8e-31 139.8 119 65.5
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 7.9e-29 132.1 91 74.7
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 5.3e-25 119.4 92 66.3
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 7.0e-25 119.0 69 82.6
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 2.9e-23 113.6 163 41.1
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 3.6e-21 106.7 78 65.4
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 2.8e-18 97.1 71 63.4
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.0e-16 90.9 118 44.9
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 2.9e-15 87.0 78 56.4
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 3.2e-14 83.6 145 40.0
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 9.1e-09 65.5 97 47.4
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 1.6e-08 64.7 51 62.7
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 4.5e-08 63.2 40 70.0


User provided reference genes

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