Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 4.0e-197 691.4 395 100.0
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 4.2e-138 495.4 412 75.7
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 2.0e-132 476.5 450 69.3
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 3.8e-131 472.2 394 74.6
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.2e-98 362.8 394 61.7
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.2e-97 360.9 378 59.3
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.2e-97 360.9 395 54.9
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 3.0e-96 356.3 390 62.8
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 3.4e-95 352.8 391 59.8
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.7e-91 340.5 394 52.3
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.3e-91 340.1 391 58.1
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 2.9e-91 339.7 391 55.2
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 3.3e-90 336.3 418 53.6
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 5.5e-90 335.5 403 52.1
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.8e-89 333.2 414 55.8
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 2.0e-87 327.0 398 54.5
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.4e-87 325.9 392 53.1
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 7.5e-87 325.1 392 52.8
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 2.2e-86 323.6 404 49.5
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 2.2e-86 323.6 397 52.1
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 2.8e-86 323.2 391 57.8
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.7e-86 322.8 385 58.2
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 4.9e-86 322.4 390 53.1
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 2.4e-85 320.1 409 57.5
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.1e-85 319.3 384 58.3
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 4.1e-85 319.3 393 57.8
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 5.4e-85 318.9 404 53.0
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 9.2e-85 318.2 409 57.9
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.2e-84 317.8 403 56.6
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 2.0e-84 317.0 395 58.2
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 5.9e-84 315.5 386 53.4
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 7.8e-84 315.1 392 51.3
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.0e-83 314.7 391 53.5
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.7e-83 313.9 398 55.3
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 3.8e-83 312.8 402 55.0
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 2.5e-82 310.1 416 54.3
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.3e-82 309.7 389 52.7
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 5.6e-82 308.9 393 53.4
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 1.6e-81 307.4 393 50.9
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 2.8e-81 306.6 386 51.8
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 6.1e-81 305.4 403 55.3
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 8.0e-81 305.1 396 56.1
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.0e-80 304.7 432 52.5
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.0e-80 304.7 378 54.8
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.4e-80 304.3 416 52.2
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 1.8e-80 303.9 390 50.8
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 6.8e-80 302.0 393 53.4
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 6.8e-80 302.0 389 51.9
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 1.2e-79 301.2 407 51.1
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 2.6e-79 300.1 407 50.6
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.3e-78 297.7 387 49.6
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 1.3e-78 297.7 392 52.8
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.7e-78 297.4 382 52.6
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 3.7e-78 296.2 394 50.0
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 1.4e-77 294.3 393 47.6
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.9e-77 293.9 403 46.7
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.4e-77 293.5 404 47.3
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 1.2e-76 291.2 393 47.8
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.2e-76 291.2 379 49.3
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.6e-76 290.8 391 49.6
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.7e-76 290.0 376 54.3
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 4.6e-76 289.3 402 46.3
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 3.9e-75 286.2 393 46.6
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.5e-74 284.3 384 47.7
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.3e-74 283.1 394 52.3
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 7.3e-74 282.0 399 48.6
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 1.2e-73 281.2 446 47.5
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 6.2e-73 278.9 385 50.9
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 4.0e-72 276.2 405 51.1
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 4.0e-72 276.2 385 50.9
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 6.8e-72 275.4 400 50.5
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 8.9e-72 275.0 405 49.1
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 9.8e-71 271.6 404 45.8
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 8.3e-70 268.5 376 56.1
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.2e-68 264.6 394 46.4
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 2.1e-68 263.8 392 49.5
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 2.7e-68 263.5 331 52.3
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 3.5e-68 263.1 395 52.2
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 4.6e-68 262.7 327 49.2
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 7.8e-68 261.9 390 45.9
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 1.5e-66 257.7 384 51.3
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 2.5e-66 256.9 397 45.3
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 2.8e-65 253.4 395 47.3
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.4e-64 251.1 268 55.6
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.8e-64 250.8 391 45.5
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 6.4e-62 242.3 375 51.7
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.1e-61 239.6 341 46.3
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 2.1e-60 237.3 394 44.9
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 3.5e-60 236.5 427 47.1
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.3e-59 234.6 408 43.1
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.5e-58 230.3 223 60.1
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.8e-57 226.9 418 45.5
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.6e-57 226.5 406 45.3
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 4.7e-57 226.1 384 47.4
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 8.1e-57 225.3 390 41.0
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 8.9e-56 221.9 440 38.4
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.2e-55 221.5 421 45.4
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.6e-55 220.3 425 45.6
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 4.4e-55 219.5 404 45.8
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 1.4e-53 214.5 371 43.7
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 4.2e-53 213.0 399 43.4
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 5.4e-53 212.6 368 41.6
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 7.1e-53 212.2 420 41.2
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 7.1e-53 212.2 414 42.8
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 1.2e-52 211.5 413 42.4
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 1.2e-52 211.5 413 42.4
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 1.2e-52 211.5 413 42.4
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 2.1e-52 210.7 182 67.0
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 2.7e-52 210.3 366 44.0
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 3.5e-52 209.9 420 44.5
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 2.3e-51 207.2 416 42.5
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 3.0e-51 206.8 414 42.8
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 2.5e-50 203.8 405 43.0
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 2.5e-50 203.8 405 43.0
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 3.3e-50 203.4 355 47.9
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 9.6e-50 201.8 410 42.2
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 2.1e-49 200.7 391 40.7
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 3.6e-49 199.9 196 58.7
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 8.1e-49 198.7 399 44.6
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 1.8e-48 197.6 416 41.1
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 1.8e-48 197.6 416 41.1
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.8e-48 197.6 419 40.1
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 9.0e-48 195.3 388 39.4
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.9e-45 187.6 423 37.4
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 4.6e-44 183.0 405 41.7
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 3.9e-43 179.9 415 41.4
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 6.6e-43 179.1 402 41.5
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 2.8e-41 173.7 346 39.3
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.6e-39 167.2 271 50.9
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 3.4e-39 166.8 416 35.3
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 7.6e-39 165.6 275 47.3
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.1e-37 161.8 375 36.5
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 9.3e-37 158.7 421 41.6
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 3.5e-36 156.8 341 43.4
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.9e-34 151.0 259 45.6
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 6.2e-33 146.0 392 32.4
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 7.4e-26 122.5 244 42.6
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 5.8e-23 112.8 199 44.2
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 3.2e-21 107.1 212 39.2
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 9.3e-21 105.5 340 32.6
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 7.9e-12 75.9 322 27.6
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 1.5e-10 71.6 159 40.3
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 7.7e-07 59.3 45 73.3


User provided reference genes

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