Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p032370 Quercus lobata HOM05D000966 ORTHO05D004359 5.4e-292 1006.9 499 100.0
Haze_17638 Corylus avellana HOM05D000966 ORTHO05D004359 1.2e-201 706.8 500 76.4
Cfa018425 Carpinus fangiana HOM05D000966 ORTHO05D004359 2.6e-201 705.7 499 76.0
CiPaw.16G022600 Carya illinoinensis HOM05D000966 ORTHO05D004359 5.0e-197 691.4 497 72.8
CiPaw.15G031200 Carya illinoinensis HOM05D000966 ORTHO05D004359 3.0e-189 665.6 497 71.2
Dinv14693 Davidia involucrata HOM05D000966 ORTHO05D004359 3.0e-165 585.9 511 63.4
Potri.005G182100 Populus trichocarpa HOM05D000966 ORTHO05D004359 4.0e-154 548.9 505 60.4
Potri.002G079100 Populus trichocarpa HOM05D000966 ORTHO05D004359 1.1e-151 540.8 505 61.4
Sabra05G0138100 Salix brachista HOM05D000966 ORTHO05D004359 9.6e-148 527.7 506 58.7
Manes.02G168600 Manihot esculenta HOM05D000966 ORTHO05D004359 8.1e-147 524.6 507 58.2
Atru.chr13.1574 Acer truncatum HOM05D000966 ORTHO05D004359 4.0e-146 522.3 499 60.3
Thecc.08G133300 Theobroma cacao HOM05D000966 ORTHO05D004359 4.0e-146 522.3 503 59.0
MD08G1159600 Malus domestica HOM05D000966 ORTHO05D004359 2.1e-142 510.0 506 55.1
TAR381G1211 Trochodendron aralioides HOM05D000966 ORTHO05D004359 3.5e-142 509.2 510 56.1
TAR625G0972 Trochodendron aralioides HOM05D000966 ORTHO05D004359 5.7e-140 501.9 499 54.5
Duzib093G1496 Durio zibethinus HOM05D000966 ORTHO05D004359 7.4e-140 501.5 502 57.0
Ciclev10000005m.g Citrus clementina HOM05D000966 ORTHO05D004359 9.6e-140 501.1 496 58.1
ClCG08G006030 Citrullus lanatus HOM05D000966 ORTHO05D004359 4.1e-138 495.7 506 57.5
RcHm_v2.0_Chr6g0296741 Rosa chinensis HOM05D000966 ORTHO05D004359 4.1e-138 495.7 508 57.7
Cpa.g.sc26.315 Carica papaya HOM05D000966 ORTHO05D004359 5.3e-138 495.4 525 54.5
MELO3C008475.2 Cucumis melo HOM05D000966 ORTHO05D004359 5.8e-137 491.9 502 57.2
MD15G1133700 Malus domestica HOM05D000966 ORTHO05D004359 1.7e-136 490.3 512 54.5
Sed0004584 Sechium edule HOM05D000966 ORTHO05D004359 8.4e-136 488.0 507 57.2
Actinidia21275 Actinidia chinensis HOM05D000966 ORTHO05D004359 1.1e-135 487.6 493 55.2
CsaV3_6G034050 Cucumis sativus L. HOM05D000966 ORTHO05D004359 1.6e-134 483.8 502 56.2
TWI60G1172 Tripterygium wilfordii HOM05D000966 ORTHO05D004359 2.7e-134 483.0 503 56.5
Sed0009206 Sechium edule HOM05D000966 ORTHO05D004359 6.1e-134 481.9 507 55.0
TWI34G1216 Tripterygium wilfordii HOM05D000966 ORTHO05D004359 6.7e-133 478.4 503 56.3
Actinidia15211 Actinidia chinensis HOM05D000966 ORTHO05D004359 2.5e-132 476.5 497 54.1
TWI32G0333 Tripterygium wilfordii HOM05D000966 ORTHO05D004359 4.3e-132 475.7 508 55.7
Manes.18G082550 Manihot esculenta HOM05D000966 ORTHO05D004359 7.4e-132 474.9 492 55.7
Eucgr.F03851 Eucalyptus grandis HOM05D000966 ORTHO05D004359 2.8e-131 473.0 506 54.2
COL.COLO4_36773 Corchorus olitorius HOM05D000966 ORTHO05D004359 4.1e-130 469.2 506 56.5
FAN20G2668 Fragaria x ananassa HOM05D000966 ORTHO05D004359 2.0e-129 466.8 527 53.5
FvH4_2g27880 Fragaria vesca HOM05D000966 ORTHO05D004359 4.5e-129 465.7 527 53.3
Gorai.005G087500 Gossypium raimondii HOM05D000966 ORTHO05D004359 4.5e-129 465.7 506 54.9
FAN24G3136 Fragaria x ananassa HOM05D000966 ORTHO05D004359 2.2e-128 463.4 527 53.3
Gohir.A02G070700 Gossypium hirsutum HOM05D000966 ORTHO05D004359 5.0e-128 462.2 505 54.3
FAN27G3367 Fragaria x ananassa HOM05D000966 ORTHO05D004359 2.5e-127 459.9 527 53.1
arahy.Tifrunner.gnm1.ann1.P7B6WW Arachis hypogaea HOM05D000966 ORTHO05D004359 3.2e-127 459.5 499 54.1
FAN15G1688 Fragaria x ananassa HOM05D000966 ORTHO05D004359 7.2e-127 458.4 527 53.3
Ca_16610_v3 Cicer arietinum L. HOM05D000966 ORTHO05D004359 2.1e-126 456.8 507 54.0
Gohir.D02G077900 Gossypium hirsutum HOM05D000966 ORTHO05D004359 2.1e-126 456.8 506 54.3
arahy.Tifrunner.gnm1.ann1.Z22D2G Arachis hypogaea HOM05D000966 ORTHO05D004359 1.0e-125 454.5 498 54.6
CSS0042459 Camellia sinensis var. sinensis HOM05D000966 ORTHO05D004359 1.5e-124 450.7 433 57.5
Glyma.04G245400 Glycine max HOM05D000966 ORTHO05D004359 7.4e-124 448.4 504 54.0
Medtr3g088625 Medicago truncatula HOM05D000966 ORTHO05D004359 8.2e-123 444.9 512 52.1
Phvul.009G130100 Phaseolus vulgaris HOM05D000966 ORTHO05D004359 1.5e-121 440.7 512 52.0
VMungo1309G2033 Vigna mungo HOM05D000966 ORTHO05D004359 2.0e-121 440.3 511 52.1
CANSAT25G2222 Cannabis sativa HOM05D000966 ORTHO05D004359 7.7e-121 438.3 511 51.5
Lj1g0026196 Lotus japonicus HOM05D000966 ORTHO05D004359 7.7e-121 438.3 505 52.7
Glyma.06G117700 Glycine max HOM05D000966 ORTHO05D004359 1.0e-120 438.0 504 53.2
TPR.G21850 Trifolium pratense HOM05D000966 ORTHO05D004359 8.5e-120 434.9 508 51.6
GSVIVG01008805001 Vitis vinifera HOM05D000966 ORTHO05D004359 1.9e-119 433.7 484 53.1
Duzib041G0231 Durio zibethinus HOM05D000966 ORTHO05D004359 7.4e-116 421.8 505 52.3
Gohir.D05G240000 Gossypium hirsutum HOM05D000966 ORTHO05D004359 7.4e-116 421.8 494 51.2
Gorai.009G248900 Gossypium raimondii HOM05D000966 ORTHO05D004359 7.4e-116 421.8 494 51.2
Nn1g08953 Nelumbo nucifera HOM05D000966 ORTHO05D004359 8.2e-115 418.3 501 51.7
Lalb_Chr11g0066181 Lupinus albus HOM05D000966 ORTHO05D004359 3.1e-114 416.4 498 50.0
Lalb_Chr08g0241051 Lupinus albus HOM05D000966 ORTHO05D004359 4.1e-114 416.0 513 48.7
PGR042G2231 Punica granatum HOM05D000966 ORTHO05D004359 4.1e-114 416.0 499 53.3
Nn5g28439 Nelumbo nucifera HOM05D000966 ORTHO05D004359 1.6e-110 404.1 509 50.9
Lalb_Chr23g0271181 Lupinus albus HOM05D000966 ORTHO05D004359 2.3e-109 400.2 499 50.5
Oeu015303.1 Olea europaea HOM05D000966 ORTHO05D004359 3.3e-108 396.4 508 47.0
Sc26g0002860 Simmondsia chinensis HOM05D000966 ORTHO05D004359 5.7e-108 395.6 509 46.6
DCAR_014368 Daucus carota HOM05D000966 ORTHO05D004359 1.8e-106 390.6 511 46.6
Hund26773 Selenicereus undatus HOM05D000966 ORTHO05D004359 1.8e-101 374.0 516 45.7
Nitab4.5_0000418g0030 Nicotiana tabacum HOM05D000966 ORTHO05D004359 6.8e-101 372.1 511 46.0
Gohir.A05G238000 Gossypium hirsutum HOM05D000966 ORTHO05D004359 8.8e-101 371.7 481 49.5
CAN.G531.16 Capsicum annuum HOM05D000966 ORTHO05D004359 7.5e-100 368.6 506 45.7
Oeu040397.2 Olea europaea HOM05D000966 ORTHO05D004359 8.3e-99 365.2 498 46.2
Oeu040396.1 Olea europaea HOM05D000966 ORTHO05D004359 1.4e-98 364.4 498 46.2
SalBow7G0355 Salvia bowleyana HOM05D000966 ORTHO05D004359 3.1e-98 363.2 500 44.2
SalBow7G2771 Salvia bowleyana HOM05D000966 ORTHO05D004359 3.1e-98 363.2 500 44.2
Sopen06g020060 Solanum pennellii HOM05D000966 ORTHO05D004359 3.1e-98 363.2 500 44.6
Peaxi162Scf00591g00715 Petunia axillaris HOM05D000966 ORTHO05D004359 4.1e-98 362.8 508 44.7
Peaxi162Scf00066g00223 Petunia axillaris HOM05D000966 ORTHO05D004359 2.0e-97 360.5 508 46.9
Solyc06g059960.4 Solanum lycopersicum HOM05D000966 ORTHO05D004359 2.7e-97 360.1 499 43.9
MBI03_g13487_MAGBIO Magnolia biondii HOM05D000966 ORTHO05D004359 3.5e-97 359.8 532 43.0
MSTRG.1411 Avicennia marina HOM05D000966 ORTHO05D004359 7.7e-97 358.6 510 42.4
Cc10_g13740 Coffea canephora HOM05D000966 ORTHO05D004359 8.5e-96 355.1 504 46.0
EL10Ac1g01359 Beta vulgaris HOM05D000966 ORTHO05D004359 1.9e-95 354.0 498 46.8
Nitab4.5_0005166g0010 Nicotiana tabacum HOM05D000966 ORTHO05D004359 6.1e-94 349.0 513 42.9
Sp5g32470 Schrenkiella parvula HOM05D000966 ORTHO05D004359 3.0e-93 346.7 496 47.6
THA.LOC104812082 Tarenaya hassleriana HOM05D000966 ORTHO05D004359 5.2e-93 345.9 483 46.4
THA.LOC104810214 Tarenaya hassleriana HOM05D000966 ORTHO05D004359 4.4e-92 342.8 495 47.3
AUR62007714 Chenopodium quinoa HOM05D000966 ORTHO05D004359 7.5e-92 342.0 500 45.2
AUR62013429 Chenopodium quinoa HOM05D000966 ORTHO05D004359 2.8e-91 340.1 500 45.8
Migut.N03259 Erythranthe guttata HOM05D000966 ORTHO05D004359 2.8e-91 340.1 514 41.6
Thhalv10017998m.g Eutrema salsugineum HOM05D000966 ORTHO05D004359 4.1e-90 336.3 498 46.8
Solyc04g057880.3 Solanum lycopersicum HOM05D000966 ORTHO05D004359 4.1e-90 336.3 405 48.6
Sopen04g025730 Solanum pennellii HOM05D000966 ORTHO05D004359 7.0e-90 335.5 405 49.9
Aqoxy5G02416 Aquilegia oxysepala HOM05D000966 ORTHO05D004359 2.7e-89 333.6 489 42.1
CSS0037288 Camellia sinensis var. sinensis HOM05D000966 ORTHO05D004359 1.7e-88 330.9 258 68.6
Carub.0002s2418 Capsella rubella HOM05D000966 ORTHO05D004359 3.3e-87 326.6 486 47.1
Aa31LG4G7310 Aethionema arabicum HOM05D000966 ORTHO05D004359 9.5e-87 325.1 497 44.3
CANSAT56G0447 Cannabis sativa HOM05D000966 ORTHO05D004359 2.1e-86 323.9 415 49.9
CANSAT64G2451 Cannabis sativa HOM05D000966 ORTHO05D004359 4.7e-86 322.8 410 50.5
AL2G37500 Arabidopsis lyrata HOM05D000966 ORTHO05D004359 1.0e-85 321.6 496 44.4
AT1G77300 Arabidopsis thaliana HOM05D000966 ORTHO05D004359 2.9e-83 313.5 494 43.5
CARHR070780 Cardamine hirsuta HOM05D000966 ORTHO05D004359 3.2e-82 310.1 495 45.9
PSO170G5191 Papaver somniferum HOM05D000966 ORTHO05D004359 3.2e-82 310.1 525 42.3
Ah.05g169110 Amaranthus hybridus HOM05D000966 ORTHO05D004359 7.0e-82 308.9 503 42.5
A07p42840 Brassica napus HOM05D000966 ORTHO05D004359 7.8e-81 305.4 494 43.5
SalBow2G0813 Salvia bowleyana HOM05D000966 ORTHO05D004359 1.7e-80 304.3 426 43.2
SGA_v2.0_scaffold28G11969 Striga asiatica HOM05D000966 ORTHO05D004359 5.0e-80 302.8 513 40.7
BraA07t31805Z Brassica rapa HOM05D000966 ORTHO05D004359 6.6e-80 302.4 494 43.1
C06p51460 Brassica napus HOM05D000966 ORTHO05D004359 3.3e-79 300.1 494 42.5
BolC6t40164H Brassica oleracea HOM05D000966 ORTHO05D004359 3.3e-79 300.1 494 42.5
CDE02G1847 Ceratophyllum demersum HOM05D000966 ORTHO05D004359 3.3e-79 300.1 397 46.6
PSO017G4997 Papaver somniferum HOM05D000966 ORTHO05D004359 3.3e-79 300.1 509 42.4
BcaB05g25036 Brassica carinata HOM05D000966 ORTHO05D004359 2.1e-78 297.4 490 42.4
COL.COLO4_35487 Corchorus olitorius HOM05D000966 ORTHO05D004359 2.6e-76 290.4 390 45.9
SGA_v2.0_scaffold25G11140 Striga asiatica HOM05D000966 ORTHO05D004359 8.3e-75 285.4 491 39.1
THA.LOC104809635 Tarenaya hassleriana HOM05D000966 ORTHO05D004359 4.3e-71 273.1 500 41.0
CDE06G2822 Ceratophyllum demersum HOM05D000625 ORTHO05D004359 7.3e-71 272.3 403 43.7
CDE08G1614 Ceratophyllum demersum HOM05D000966 ORTHO05D004359 9.5e-71 271.9 400 43.0
BcaC08g47620 Brassica carinata HOM05D000966 ORTHO05D004359 1.6e-70 271.2 494 40.5
HanXRQChr05g0149781 Helianthus annuus HOM05D000966 ORTHO05D004359 4.7e-70 269.6 477 39.4
Lsat_1_v5_gn_6_110300 Lactuca sativa HOM05D000966 ORTHO05D004359 2.3e-69 267.3 479 40.3
ECA246G3937 Erigeron canadensis HOM05D000966 ORTHO05D004359 5.8e-68 262.7 479 39.0
Psat1g148080 Pisum sativum HOM05D000966 ORTHO05D004359 6.4e-67 259.2 167 79.0
Psat5g084600 Pisum sativum HOM05D000966 ORTHO05D004359 1.4e-66 258.1 164 80.5
unitig_747.g21497 Utricularia gibba HOM05D000966 ORTHO05D004359 1.0e-64 251.9 238 58.4
unitig_0.g2115 Utricularia gibba HOM05D000966 ORTHO05D004359 1.3e-64 251.5 608 33.4
ATR0584G046 Amborella trichopoda HOM05D000966 ORTHO05D004359 5.8e-60 236.1 336 44.3
Oeu026372.2 Olea europaea HOM05D000966 ORTHO05D004359 7.6e-60 235.7 155 77.4
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 1.3e-59 235.0 374 41.7
Rhsim06G0088400 Rhododendron simsii HOM05D000966 ORTHO05D004359 9.9e-52 208.8 124 85.5
SEGI_04625 Sequoiadendron giganteum HOM05D000966 ORTHO05D004359 4.9e-51 206.5 447 35.8
Nitab4.5_0000317g0220 Nicotiana tabacum HOM05D000966 ORTHO05D004359 6.6e-48 196.1 508 33.3
Nitab4.5_0003978g0030 Nicotiana tabacum HOM05D000966 ORTHO05D004359 6.9e-45 186.0 510 32.7
DCAR_016658 Daucus carota HOM05D000966 ORTHO05D004359 2.3e-40 171.0 121 74.4
HPP92_016112 Vanilla planifolia HOM05D000966 ORTHO05D004359 5.1e-40 169.9 528 29.5
Hma1.2p1_0880F.1_g231810 Hydrangea macrophylla HOM05D000966 ORTHO05D004359 1.1e-37 162.2 314 38.2
SHI09224 Sapria himalayana HOM05D000966 ORTHO05D004359 6.9e-37 159.5 431 31.1
PGSC0003DMG402025314 Solanum tuberosum HOM05D000966 ORTHO05D004359 3.4e-36 157.1 282 37.2
Pp3c1_33770 Physcomitrium patens HOM05D000966 ORTHO05D004359 1.4e-34 151.8 138 56.5
Pp3c2_12540 Physcomitrium patens HOM05D000966 ORTHO05D004359 4.2e-34 150.2 240 42.1
CANSAT80G2061 Cannabis sativa HOM05D000966 ORTHO05D004359 2.1e-33 147.9 298 38.6
Mapoly0192s0005 Marchantia polymorpha HOM05D000966 ORTHO05D004359 5.1e-32 143.3 140 53.6
CSS0026263 Camellia sinensis var. sinensis HOM05D000966 ORTHO05D004359 1.3e-30 138.7 82 87.8
Hma1.2p1_2565F.1_g324500 Hydrangea macrophylla HOM05D000966 ORTHO05D004359 3.7e-30 137.1 93 79.6
THA.LOC104817099 Tarenaya hassleriana HOM05D000966 ORTHO05D004359 1.4e-29 135.2 82 85.4
SHI09225 Sapria himalayana HOM05D000966 ORTHO05D004359 4.0e-29 133.7 83 81.9
DCAR_016659 Daucus carota HOM05D000966 ORTHO05D004359 8.4e-27 125.9 286 32.9
Lj7P351T22 Lonicera japonica HOM05D000966 ORTHO05D004359 5.7e-23 113.2 215 40.0
Os02g0554000 Oryza sativa ssp. japonica HOM05D000966 ORTHO05D004359 6.3e-22 109.8 83 68.7
AagrBONN_evm.TU.Sc2ySwM_228.2240 Anthoceros agrestis HOM05D000966 ORTHO05D004359 6.9e-21 106.3 141 44.7
SEGI_09567 Sequoiadendron giganteum HOM05D000966 ORTHO05D004359 1.3e-19 102.1 83 65.1
Zm00001eb243610 Zea mays HOM05D000966 ORTHO05D004359 3.8e-19 100.5 83 66.3
CBR_g52455 Chara braunii HOM05D000966 ORTHO05D004359 2.1e-17 94.7 138 37.0
unitig_747.g21498 Utricularia gibba HOM05D000966 ORTHO05D004359 1.8e-16 91.7 216 32.9
Actinidia33296 Actinidia chinensis HOM05D000966 ORTHO05D004359 1.5e-15 88.6 98 48.0


User provided reference genes

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