Gene: Sopen06g020060

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g020060
  • Transcript Identifier Sopen06g020060.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 47631466-47653244 : negative

Gene Family Information

  • ID HOM05D000966
  • #Genes/#Species 619/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g020060.1

Descriptions

  • Description Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones.Required for ovule, embryo sac, anther and pollen development. | EARLY FLOWERING IN SHORT DAYS (EFS) | FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific) | INVOLVED IN: in 10 processes | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: SET domain , Post-SET domain , AWS , Zinc finger, CW-type | BEST Arabidopsis thaliana protein match is: SET domain group 26
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT1G77300
GO:0010223
ISO
PLAZA Integrative Orthologysecondary shoot formation AT1G77300
GO:0016116
ISO
PLAZA Integrative Orthologycarotenoid metabolic process AT1G77300
GO:0090548
ISO
PLAZA Integrative Orthologyresponse to nitrate starvation AT1G77300
GO:0048481
ISO
PLAZA Integrative Orthologyplant ovule development AT1G77300
GO:0048653
ISO
PLAZA Integrative Orthologyanther development AT1G77300
GO:0040029
ISO
PLAZA Integrative Orthologyregulation of gene expression, epigenetic AT1G77300
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT1G77300
GO:0009553
ISO
PLAZA Integrative Orthologyembryo sac development AT1G77300
GO:0043067
ISO
PLAZA Integrative Orthologyregulation of programmed cell death AT1G77300
GO:0031062
ISO
PLAZA Integrative Orthologypositive regulation of histone methylation AT1G77300
GO:0010363
ISO
PLAZA Integrative Orthologyregulation of plant-type hypersensitive response AT1G77300
GO:0010452
IEA
InterProhistone H3-K36 methylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0042800
ISO
PLAZA Integrative Orthologyhistone methyltransferase activity (H3-K4 specific) AT1G77300
GO:0008270
IEA
InterProzinc ion binding
GO:0046975
IEA
InterProhistone methyltransferase activity (H3-K36 specific)
GO:0018024
IEA
InterProhistone-lysine N-methyltransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001214 SET domain
IPR006560 AWS domain
IPR044437 SETD2/Set2, SET domain
IPR011124 Zinc finger, CW-type
Mapman id Description
12.3.3.3 Chromatin organisation.post-translational histone modification.histone lysine methylation.class-II histone methyltransferase (ASH)