Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 0.0e+00 3866.6 2170 100.0
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 0.0e+00 2214.1 2217 63.3
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 0.0e+00 2198.7 2113 63.7
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 0.0e+00 2121.3 2112 61.6
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 0.0e+00 1348.6 2135 46.7
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 0.0e+00 1314.7 2118 45.9
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 0.0e+00 1255.7 2089 44.7
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 0.0e+00 1234.6 2105 45.0
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 0.0e+00 1194.5 2105 44.8
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 0.0e+00 1186.0 2144 44.6
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 0.0e+00 1152.5 2103 43.5
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 0.0e+00 1115.9 2100 42.8
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 0.0e+00 1112.4 2203 41.4
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 0.0e+00 1104.4 1815 46.2
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 0.0e+00 1099.0 2062 43.1
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 0.0e+00 1099.0 2062 43.2
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 0.0e+00 1093.6 1958 43.1
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 0.0e+00 1075.8 2083 41.7
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.3e-310 1070.8 1984 43.1
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 6.5e-310 1068.5 2180 40.7
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 1.8e-307 1060.4 2152 40.6
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 3.1e-307 1059.7 2204 38.4
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 3.4e-306 1056.2 2146 41.1
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 9.8e-306 1054.7 2136 41.5
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 5.4e-304 1048.9 2179 40.3
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.9e-302 1042.7 2000 41.9
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 9.9e-298 1028.1 2172 40.7
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 1.4e-296 1024.2 2154 40.3
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.7e-286 990.7 1440 47.8
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 9.6e-285 984.9 2105 39.2
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.6e-263 914.4 2038 40.4
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 3.7e-260 903.3 2144 39.1
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.2e-258 898.3 1933 41.0
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 7.1e-256 889.0 2123 38.8
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 2.5e-253 880.6 1977 40.1
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 6.9e-251 872.5 1924 40.5
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 2.2e-249 867.5 2221 37.8
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 3.7e-244 850.1 2128 38.7
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 4.1e-243 846.7 1950 39.5
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 1.4e-240 838.2 1964 39.0
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 3.2e-240 837.0 1249 48.2
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 3.1e-235 820.5 1837 38.5
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 2.3e-230 804.3 1932 39.4
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 4.8e-228 796.6 2160 37.5
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 8.5e-225 785.8 2156 37.1
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 1.6e-223 781.6 2021 37.1
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 1.8e-222 778.1 782 63.8
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 3.0e-222 777.3 1967 38.2
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.7e-217 761.5 1922 37.3
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 2.5e-216 757.7 800 61.0
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 1.0e-209 735.7 2151 34.7
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 1.2e-207 728.8 1964 35.7
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 2.3e-206 724.5 2120 35.3
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 2.4e-195 688.0 1156 45.6
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 7.0e-195 686.4 731 63.2
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 1.1e-192 679.1 1272 44.7
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.9e-179 635.2 804 55.3
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 4.6e-178 630.6 2135 33.1
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 1.7e-177 628.6 1713 34.0
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 1.1e-171 609.4 978 47.3
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.0e-169 602.8 1946 34.2
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 2.0e-165 588.6 2074 33.1
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.0e-165 588.6 2125 32.7
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 5.8e-165 587.0 1939 33.4
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 1.0e-161 576.2 1900 31.9
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 8.7e-161 573.2 2202 31.2
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 6.2e-159 567.0 2058 32.5
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 5.5e-155 553.9 2066 31.6
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 7.1e-155 553.5 871 47.3
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 3.9e-153 547.7 2060 31.6
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.5e-152 545.8 2060 31.6
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 3.3e-152 544.7 2096 32.2
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.3e-151 542.7 2160 31.7
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 2.8e-151 541.6 2104 31.8
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 3.8e-148 531.2 2102 29.8
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 1.9e-147 528.9 976 45.4
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 2.5e-147 528.5 478 70.5
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 3.3e-144 518.1 810 49.9
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 5.9e-141 507.3 849 45.2
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 6.5e-140 503.8 780 47.4
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 8.4e-140 503.4 849 44.9
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 1.4e-139 502.7 896 43.3
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.4e-139 502.7 777 47.5
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.2e-138 499.6 1967 31.1
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 1.3e-137 496.1 2160 30.9
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 8.7e-137 493.4 912 45.5
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 1.1e-136 493.0 800 47.6
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 3.3e-136 491.5 931 43.9
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 1.6e-135 489.2 2187 30.4
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 2.2e-135 488.8 827 47.3
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 4.1e-134 484.6 1997 29.0
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 6.5e-132 477.2 798 48.1
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 6.5e-132 477.2 827 46.8
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 6.7e-129 467.2 1965 29.8
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 2.0e-128 465.7 893 43.1
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 1.8e-126 459.1 730 48.9
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 8.8e-121 440.3 940 40.2
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 9.1e-118 430.3 2155 29.8
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.3e-116 426.4 497 58.8
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.1e-115 423.3 759 41.6
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 1.3e-108 399.8 821 41.9
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 1.9e-107 396.0 911 39.6
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 2.3e-105 389.0 507 48.5
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 9.1e-102 377.1 644 42.1
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 2.9e-100 372.1 795 41.9
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 1.1e-99 370.2 802 40.3
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 1.3e-92 346.7 972 36.3
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 5.0e-92 344.7 620 45.5
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 3.0e-76 292.4 934 30.9
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 3.9e-76 292.0 601 37.4
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 8.6e-76 290.8 810 39.8
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.1e-75 290.4 1505 29.3
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 5.2e-73 281.6 334 58.1
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 7.5e-72 277.7 971 32.2
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.5e-67 262.7 254 55.9
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 4.7e-66 258.5 792 34.1
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.4e-65 256.9 1653 27.4
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 8.4e-63 247.7 1081 29.7
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 8.9e-57 227.6 282 59.6
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 1.1e-54 220.7 551 39.9
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.1e-51 210.7 1671 25.8
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 1.3e-47 197.2 540 38.0
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 2.8e-42 179.5 215 47.9
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 7.1e-38 164.9 144 63.2
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 3.5e-37 162.5 224 45.1
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 4.3e-35 155.6 210 63.3
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 5.6e-35 155.2 139 54.0
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 3.4e-32 146.0 99 74.7
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 2.7e-29 136.3 409 31.8
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 1.5e-27 130.6 225 54.7
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 2.0e-24 120.2 142 52.1
MD08G1160200 Malus domestica HOM05D000237 ORTHO05D006530 8.7e-20 104.8 317 31.5
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 7.4e-19 101.7 250 33.2
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 1.8e-17 97.1 99 59.6
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 4.1e-17 95.9 119 48.7
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 9.1e-17 94.7 136 45.6
MD08G1160100 Malus domestica HOM05D000237 ORTHO05D006530 9.4e-14 84.7 150 42.7
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 1.7e-10 73.9 135 40.7
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 2.4e-09 70.1 144 31.9
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 4.1e-09 69.3 151 32.5
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 5.3e-09 68.9 556 25.7
BcaC04g19090 Brassica carinata HOM05D001762 ORTHO05D001774 3.8e-07 62.8 110 38.2


User provided reference genes

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