Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 0.0e+00 1116.7 622 100.0
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 1.4e-300 1035.8 622 90.5
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 1.6e-221 773.1 626 75.7
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 1.1e-206 723.8 572 78.0
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 5.7e-198 694.9 626 70.4
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 2.2e-170 603.2 624 63.1
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 2.1e-160 570.1 557 66.1
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.2e-158 564.3 557 65.5
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 2.8e-157 559.7 609 62.6
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 2.8e-157 559.7 556 66.0
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 1.8e-156 557.0 557 65.4
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 5.9e-155 552.0 623 60.8
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.5e-153 547.4 557 64.8
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 1.9e-153 547.0 613 60.5
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 6.8e-151 538.5 575 63.0
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 2.6e-150 536.6 609 59.1
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 5.6e-145 518.8 616 55.8
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 5.2e-143 512.3 525 66.3
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 1.9e-137 493.8 613 56.4
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 4.7e-136 489.2 608 57.1
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 8.9e-135 485.0 611 53.5
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 3.7e-133 479.6 625 56.0
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 3.2e-132 476.5 454 68.5
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 2.1e-131 473.8 460 67.4
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 3.5e-131 473.0 539 61.0
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 3.5e-131 473.0 595 57.1
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 6.0e-131 472.2 599 56.1
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 8.6e-130 468.4 454 67.6
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 1.4e-127 461.1 465 67.1
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 3.1e-127 459.9 618 52.4
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 3.4e-126 456.4 609 53.5
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 6.4e-125 452.2 486 64.0
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 3.9e-122 443.0 457 62.4
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 7.3e-121 438.7 451 65.0
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 1.6e-120 437.6 445 65.2
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 3.6e-120 436.4 530 56.6
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 6.2e-120 435.6 444 65.5
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 6.9e-119 432.2 437 63.8
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 9.0e-119 431.8 459 61.9
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 1.5e-118 431.0 509 57.6
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 2.0e-118 430.6 451 63.0
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 2.2e-117 427.2 521 54.7
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 1.1e-116 424.9 446 63.9
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 1.1e-116 424.9 564 55.0
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 1.4e-116 424.5 608 52.8
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 2.4e-116 423.7 446 64.1
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 3.2e-116 423.3 445 62.0
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 9.3e-116 421.8 444 64.4
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 3.5e-115 419.9 534 56.4
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 1.7e-114 417.5 578 54.7
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 6.6e-114 415.6 446 62.6
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 1.1e-113 414.8 532 58.1
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 1.9e-113 414.1 459 61.7
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 4.3e-113 412.9 497 56.5
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 1.8e-111 407.5 456 61.4
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 4.0e-111 406.4 447 62.6
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 3.4e-110 403.3 619 51.5
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 4.5e-110 402.9 440 62.7
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 2.2e-109 400.6 441 62.1
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 3.8e-109 399.8 462 60.0
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 8.4e-109 398.7 621 51.2
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 1.1e-108 398.3 448 60.5
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 1.1e-108 398.3 383 70.0
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 2.4e-108 397.1 460 60.4
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 5.4e-108 396.0 476 58.2
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 3.0e-106 390.2 406 65.8
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 1.5e-105 387.9 471 59.7
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 2.1e-104 384.0 452 59.1
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 2.4e-103 380.6 507 54.4
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 2.4e-103 380.6 531 53.9
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 9.9e-102 375.2 520 55.0
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 2.2e-101 374.0 446 59.0
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 1.1e-100 371.7 630 48.9
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 1.9e-100 370.9 534 52.2
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 2.4e-100 370.5 507 53.6
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 8.2e-96 355.5 531 51.8
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 1.8e-95 354.4 449 57.9
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 1.5e-94 351.3 446 57.0
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 1.3e-90 338.2 416 60.3
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 1.8e-90 337.8 427 59.5
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 5.7e-89 332.8 479 53.2
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 4.8e-88 329.7 387 45.7
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 4.8e-88 329.7 387 45.7
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 1.1e-87 328.6 445 53.7
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 2.4e-87 327.4 446 52.9
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 1.2e-86 325.1 445 53.5
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 1.5e-86 324.7 449 55.0
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 5.9e-86 322.8 544 48.9
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 2.7e-83 313.9 445 50.6
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 7.9e-83 312.4 531 48.2
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 1.4e-82 311.6 493 50.5
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 1.8e-82 311.2 441 40.6
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 1.9e-76 291.2 386 56.7
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 2.4e-71 274.2 602 43.0
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 3.7e-64 250.4 389 52.4
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 1.8e-63 248.1 446 46.4
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 1.8e-63 248.1 446 46.4
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 6.7e-58 229.6 357 39.5
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 6.7e-58 229.6 357 39.5
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 3.8e-53 213.8 201 53.2
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 1.5e-52 211.8 204 52.5
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 4.8e-48 196.8 212 50.9
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 1.2e-46 192.2 315 37.5
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 1.3e-45 188.7 210 52.9
CiPaw.10G003300 Carya illinoinensis HOM05D007093 ORTHO05D008910 1.6e-14 85.5 125 44.8
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 4.3e-12 77.4 185 27.0
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 1.6e-11 75.5 111 39.6
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 1.6e-11 75.5 111 39.6
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 4.7e-11 73.9 145 30.3
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 1.8e-10 72.0 148 29.1
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 2.4e-10 71.6 159 26.4
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 8.9e-10 69.7 422 18.2
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 2.6e-09 68.2 159 25.2
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 4.4e-09 67.4 496 19.2
AagrBONN_evm.TU.Sc2ySwM_228.4327 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.6e-09 66.6 159 30.8
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.7e-08 65.5 141 27.0
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.7e-08 65.5 148 27.0
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 4.9e-08 63.9 199 25.1
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 4.9e-08 63.9 170 25.3
Ah.08g211930 Amaranthus hybridus HOM05D000855 ORTHO05D008530 6.4e-08 63.5 153 27.5
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 6.4e-08 63.5 176 25.6
AagrBONN_evm.TU.Sc2ySwM_362.120 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.4e-08 63.2 159 29.6
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 8.4e-08 63.2 176 25.0
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 8.4e-08 63.2 176 25.6
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 1.4e-07 62.4 199 24.6
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 1.4e-07 62.4 199 24.6
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 1.9e-07 62.0 183 27.9
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 1.9e-07 62.0 141 24.8
Atru.chr10.1354 Acer truncatum HOM05D007093 ORTHO05D008910 2.4e-07 61.6 37 70.3
ECA240G0604 Erigeron canadensis HOM05D000162 ORTHO05D000090 2.4e-07 61.6 166 28.9
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 2.4e-07 61.6 176 25.0
AagrBONN_evm.TU.Sc2ySwM_228.5230 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.4e-07 60.5 137 28.5
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 7.1e-07 60.1 148 26.4
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 9.2e-07 59.7 140 27.9
AagrBONN_evm.TU.Sc2ySwM_368.2012 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.2e-07 59.7 432 18.5
AagrBONN_evm.TU.Sc2ySwM_368.2013 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.2e-07 59.7 432 18.5
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 9.2e-07 59.7 153 26.1
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.2e-06 59.3 140 27.9
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 1.2e-06 59.3 151 27.8
Hund13165 Selenicereus undatus HOM05D007093 ORTHO05D008910 1.2e-06 59.3 48 58.3
AagrBONN_evm.TU.Sc2ySwM_362.2314 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 58.9 171 28.1
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 1.6e-06 58.9 153 26.8
Lj6C59T5 Lonicera japonica HOM05D008684 ORTHO05D010796 1.6e-06 58.9 168 24.4
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 1.6e-06 58.9 158 25.3
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 2.1e-06 58.5 150 26.0
Nitab4.5_0000895g0210 Nicotiana tabacum HOM05D001779 ORTHO05D001753 2.1e-06 58.5 151 27.8
Zm00001eb004770 Zea mays HOM05D002479 ORTHO05D002675 2.1e-06 58.5 163 24.5
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 2.7e-06 58.2 141 26.2
PSO173G0027 Papaver somniferum HOM05D000001 ORTHO05D010435 2.7e-06 58.2 228 22.8
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 3.5e-06 57.8 139 25.9
CSS0013853 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 3.5e-06 57.8 153 25.5
CSS0023086 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 3.5e-06 57.8 153 25.5
ECA232G2455 Erigeron canadensis HOM05D000001 ORTHO05D009971 3.5e-06 57.8 163 24.5
PSO566G0001 Papaver somniferum HOM05D000001 ORTHO05D010435 3.5e-06 57.8 228 23.2
SGA_v2.0_scaffold359G49863 Striga asiatica HOM05D000001 ORTHO05D010340 3.5e-06 57.8 131 24.4
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.6e-06 57.4 137 27.7
AagrBONN_evm.TU.Sc2ySwM_362.660 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.6e-06 57.4 139 27.3
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 4.6e-06 57.4 153 24.8
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 4.6e-06 57.4 170 23.5
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 4.6e-06 57.4 170 23.5
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 4.6e-06 57.4 148 27.7
AagrBONN_evm.TU.Sc2ySwM_344.5455 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.0e-06 57.0 159 27.7
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 6.0e-06 57.0 533 19.7
Haze_22690 Corylus avellana HOM05D000001 ORTHO05D009837 6.0e-06 57.0 142 28.2
ECA233G0776 Erigeron canadensis HOM05D000001 ORTHO05D000003 6.0e-06 57.0 166 22.9
Peaxi162Scf00229g00044 Petunia axillaris HOM05D000001 ORTHO05D000003 6.0e-06 57.0 190 23.7
SalBow6G5562 Salvia bowleyana HOM05D001779 ORTHO05D001753 6.0e-06 57.0 151 25.2
AagrBONN_evm.TU.Sc2ySwM_362.1609 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.8e-06 56.6 127 26.8
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 7.8e-06 56.6 160 26.2
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 7.8e-06 56.6 148 27.0


User provided reference genes

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