Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 6.4e-296 1020.0 517 100.0
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.4e-250 868.6 523 85.1
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 5.9e-249 864.0 523 84.9
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 2.9e-248 861.7 523 84.7
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 5.7e-244 847.4 522 83.1
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 3.1e-242 841.6 515 83.1
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 2.2e-240 835.5 498 83.9
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 5.0e-240 834.3 518 81.7
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.4e-239 832.8 516 81.8
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.9e-239 832.4 522 80.8
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 7.2e-239 830.5 524 81.5
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 1.2e-238 829.7 524 81.5
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.1e-238 828.9 524 81.5
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 2.7e-238 828.6 518 81.7
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 4.7e-238 827.8 459 88.7
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 2.3e-237 825.5 482 85.5
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 2.3e-237 825.5 522 80.8
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.0e-237 825.1 520 81.3
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 1.5e-236 822.8 486 84.4
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.0e-236 822.4 518 81.1
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 3.3e-236 821.6 522 80.3
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.3e-236 821.6 471 86.4
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.7e-235 819.3 524 80.2
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 2.8e-235 818.5 525 80.2
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 6.3e-235 817.4 465 87.1
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 8.2e-235 817.0 479 84.8
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 8.2e-235 817.0 537 77.8
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 2.4e-234 815.5 522 79.5
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 3.1e-234 815.1 523 79.5
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 4.1e-234 814.7 522 79.5
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 5.3e-234 814.3 460 86.7
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 9.1e-234 813.5 517 80.9
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 9.1e-234 813.5 459 87.1
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.2e-233 813.1 539 78.5
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.2e-233 813.1 465 87.1
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.6e-233 812.8 524 78.8
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.0e-233 812.4 516 80.2
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.6e-233 812.0 554 76.0
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 7.7e-233 810.4 480 83.1
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 7.7e-233 810.4 471 84.3
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.0e-232 810.1 470 84.9
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 1.0e-232 810.1 474 85.4
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.0e-232 810.1 556 75.9
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.3e-232 809.7 523 78.8
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 2.9e-232 808.5 476 84.7
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 2.9e-232 808.5 460 86.7
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.8e-232 808.1 482 82.8
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 8.5e-232 807.0 524 78.4
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.1e-231 806.6 515 79.4
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 1.9e-231 805.8 461 86.6
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.9e-231 805.8 537 77.8
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 2.5e-231 805.4 486 82.5
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.2e-231 805.1 460 86.3
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 4.2e-231 804.7 466 84.8
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 5.5e-231 804.3 467 85.2
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 8.0e-230 800.4 474 83.5
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 8.0e-230 800.4 516 78.7
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.4e-229 799.7 469 83.6
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 3.0e-229 798.5 517 79.1
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 4.0e-229 798.1 522 75.9
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 4.0e-229 798.1 531 78.3
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 5.2e-229 797.7 461 84.8
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 6.7e-229 797.3 515 78.3
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 8.8e-229 797.0 517 78.5
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 1.5e-228 796.2 516 78.3
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 2.6e-228 795.4 530 77.2
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.6e-228 795.4 468 84.0
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 3.3e-228 795.0 460 84.6
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 9.7e-228 793.5 459 83.9
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 9.7e-228 793.5 482 81.7
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.3e-227 793.1 482 81.7
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.7e-227 792.7 471 82.2
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.2e-227 792.3 510 77.6
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 2.8e-227 792.0 512 79.7
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 6.3e-227 790.8 479 82.5
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.4e-226 789.6 474 81.4
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 3.5e-225 785.0 526 77.0
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 7.7e-225 783.9 477 81.6
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.7e-224 782.7 490 80.2
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 6.5e-224 780.8 550 74.2
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 6.5e-224 780.8 503 77.3
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.5e-223 779.6 476 79.8
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 3.2e-223 778.5 476 79.8
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 5.5e-223 777.7 503 76.9
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 7.2e-223 777.3 473 80.3
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 9.4e-223 776.9 510 75.9
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 9.4e-223 776.9 531 75.5
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.2e-222 776.5 498 77.9
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.1e-222 775.8 501 76.0
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 2.1e-222 775.8 476 79.4
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.7e-222 775.4 505 76.4
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.8e-221 772.7 503 76.3
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-220 770.0 515 74.4
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 3.4e-220 768.5 459 81.0
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 8.3e-219 763.8 484 79.3
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.4e-218 763.1 503 75.1
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.4e-218 763.1 510 75.9
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 4.5e-217 758.1 527 75.0
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.3e-216 756.5 494 75.7
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 1.7e-216 756.1 479 78.9
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 4.2e-215 751.5 524 75.4
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.7e-211 739.6 467 77.3
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 1.9e-207 726.1 464 75.6
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 2.5e-207 725.7 471 74.5
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 4.7e-206 721.5 518 68.7
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 9.8e-204 713.8 461 77.0
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 8.3e-203 710.7 420 82.6
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.1e-202 710.3 404 86.6
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 3.2e-202 708.8 470 73.8
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.3e-200 703.4 459 76.3
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 8.6e-200 700.7 490 73.3
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.3e-197 692.6 457 73.1
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 2.0e-196 689.5 520 71.2
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 5.8e-196 688.0 453 79.9
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.3e-195 686.8 382 89.5
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 1.2e-193 680.2 450 80.0
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 3.9e-192 675.2 430 77.2
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 3.6e-190 668.7 374 87.7
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.1e-189 667.2 374 87.7
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 2.3e-184 649.4 453 71.7
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 2.3e-184 649.4 459 72.8
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 8.6e-184 647.5 453 68.4
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.6e-182 643.3 399 81.2
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 4.7e-182 641.7 741 50.1
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 5.1e-176 621.7 476 67.9
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 5.2e-173 611.7 453 70.4
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-170 604.0 453 67.8
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 3.8e-163 578.9 341 85.9
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.9e-162 576.6 402 76.4
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 9.1e-117 424.9 237 87.3
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-116 424.5 373 62.5
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 1.2e-116 424.5 304 73.7
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 6.1e-105 385.6 292 67.5
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.7e-94 350.9 249 73.9
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 2.4e-93 347.1 458 41.0
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 9.5e-90 335.1 468 39.7
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.6e-89 334.3 201 82.1
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.0e-83 313.5 448 38.8
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.2e-79 301.6 232 67.2
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.7e-67 261.2 400 43.0
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.2e-62 244.2 131 90.8
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 3.2e-61 240.4 150 79.3
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 4.7e-57 226.5 171 67.3
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 7.6e-55 219.2 166 70.5
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 2.1e-52 211.1 196 57.7
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 7.1e-45 186.0 130 66.2
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.7e-44 184.1 121 67.8
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 7.9e-44 182.6 98 89.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 1.3e-43 181.8 249 43.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.3e-42 177.2 378 29.9
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 2.0e-39 167.9 123 69.1
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 9.9e-39 165.6 91 90.1
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 3.1e-32 144.1 80 85.0
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 6.9e-32 142.9 124 54.8
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 2.0e-31 141.4 93 77.4
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 3.8e-30 137.1 290 32.1
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 1.6e-28 131.7 100 65.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 3.5e-28 130.6 100 65.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 8.7e-27 125.9 74 82.4
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 6.5e-14 83.2 56 66.1
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 3.6e-12 77.4 98 48.0
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 6.1e-12 76.6 67 56.7
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 2.3e-11 74.7 47 72.3
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 3.3e-10 70.9 41 78.0
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 2.0e-07 61.6 35 80.0
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 5.9e-07 60.1 38 76.3
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 1.7e-06 58.5 51 58.8


User provided reference genes

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