Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 1.1e-162 576.6 296 100.0
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 5.9e-121 438.0 283 79.2
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 3.3e-111 405.6 227 87.2
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 2.9e-107 392.5 289 68.9
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 2.3e-104 382.9 282 68.8
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 3.9e-104 382.1 292 67.1
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 6.6e-104 381.3 265 71.7
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 6.6e-104 381.3 298 65.1
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 1.5e-103 380.2 291 67.7
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 2.5e-103 379.4 292 67.1
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 3.3e-103 379.0 290 67.6
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 9.5e-103 377.5 285 67.0
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 1.6e-102 376.7 292 66.4
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 3.1e-101 372.5 290 65.9
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.1e-101 372.5 290 65.9
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.2e-101 371.7 290 65.9
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 5.2e-101 371.7 295 64.7
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.9e-101 370.9 290 65.9
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.2e-100 370.5 291 64.6
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 2.0e-100 369.8 278 67.6
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.4e-100 369.0 290 65.5
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 4.4e-100 368.6 287 66.2
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 7.6e-100 367.9 283 65.7
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 4.1e-98 362.1 281 65.1
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 7.1e-98 361.3 283 66.4
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 4.6e-97 358.6 283 65.0
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 7.8e-97 357.8 254 70.1
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.0e-96 357.5 282 65.2
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 1.0e-96 357.5 282 63.5
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 1.7e-96 356.7 278 64.4
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 3.9e-96 355.5 282 61.3
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 2.5e-95 352.8 281 64.8
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 7.3e-95 351.3 261 66.7
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 3.6e-94 349.0 281 64.4
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 6.2e-94 348.2 269 63.6
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.1e-93 347.4 276 65.2
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 1.8e-93 346.7 221 80.5
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 2.4e-93 346.3 291 60.8
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 3.1e-93 345.9 282 65.6
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.0e-93 345.5 292 59.6
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 8.9e-93 344.4 291 60.8
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 9.9e-92 340.9 287 59.2
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 2.2e-91 339.7 269 64.3
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 4.9e-91 338.6 338 53.0
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 6.4e-91 338.2 290 58.3
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 1.4e-90 337.0 280 59.3
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 1.9e-90 336.7 270 62.6
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 2.4e-90 336.3 279 59.5
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 3.2e-90 335.9 239 66.1
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 3.2e-90 335.9 276 58.3
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 4.2e-90 335.5 286 61.2
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 4.2e-90 335.5 280 59.3
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 5.4e-90 335.1 270 61.1
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 5.4e-90 335.1 271 59.8
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 7.1e-90 334.7 268 64.2
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 1.2e-89 334.0 271 59.4
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 2.1e-89 333.2 267 61.4
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 6.0e-89 331.6 280 59.3
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 1.3e-88 330.5 285 59.6
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 2.3e-88 329.7 300 57.3
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 3.0e-88 329.3 283 60.4
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 3.0e-88 329.3 295 57.3
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 5.6e-87 325.1 267 60.3
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 7.3e-87 324.7 286 58.7
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 9.6e-87 324.3 291 58.8
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 9.6e-87 324.3 283 58.7
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 2.1e-86 323.2 303 56.4
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 4.8e-86 322.0 292 60.3
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 1.1e-85 320.9 271 59.8
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 1.8e-85 320.1 282 58.9
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 1.8e-85 320.1 291 56.4
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 2.4e-85 319.7 271 60.1
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.4e-85 319.7 291 59.1
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 2.4e-85 319.7 291 59.1
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 4.0e-85 318.9 269 61.0
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 1.5e-84 317.0 290 57.6
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 4.5e-84 315.5 289 56.4
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 4.5e-84 315.5 289 56.4
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 4.5e-84 315.5 289 56.4
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 5.8e-84 315.1 290 56.6
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 7.6e-84 314.7 290 55.9
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 9.9e-84 314.3 290 55.9
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 2.2e-83 313.2 316 53.2
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 2.4e-82 309.7 281 56.9
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 5.4e-82 308.5 261 60.5
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 5.4e-82 308.5 294 56.8
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 8.1e-78 294.7 274 54.7
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 1.4e-77 293.9 301 52.2
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.2e-76 290.8 263 55.1
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 3.4e-76 289.3 273 54.2
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 2.7e-73 279.6 267 55.1
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 2.5e-71 273.1 227 61.7
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 4.3e-71 272.3 227 64.3
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 7.4e-71 271.6 272 52.2
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 5.3e-69 265.4 234 53.0
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 1.2e-68 264.2 292 50.3
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 4.5e-68 262.3 232 56.0
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.2e-65 254.2 227 54.6
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 1.0e-64 251.1 237 51.5
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 3.0e-64 249.6 261 51.3
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 1.4e-61 240.7 286 47.6
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 6.9e-61 238.4 280 49.3
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 3.4e-60 236.1 385 37.7
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 2.6e-47 193.4 188 51.1
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 9.7e-47 191.4 245 44.5
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 4.8e-46 189.1 241 43.6
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 1.1e-39 167.9 239 41.0
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 9.1e-37 158.3 131 62.6
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.0e-35 154.8 106 63.2
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.0e-35 154.8 106 63.2
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 3.8e-35 152.9 237 36.3
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.8e-35 152.9 169 50.3
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 6.5e-35 152.1 146 54.1
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.5e-34 151.0 166 50.0
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 4.0e-32 142.9 285 31.9
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.7e-30 137.5 136 58.1
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 3.5e-28 129.8 232 35.3
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 9.4e-26 121.7 95 69.5
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 2.2e-22 110.5 300 28.3
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 3.7e-22 109.8 233 33.5
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 4.5e-20 102.8 126 49.2
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 5.9e-20 102.4 247 30.4
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 3.8e-19 99.8 88 58.0
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 1.1e-18 98.2 75 66.7
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 1.9e-18 97.4 138 42.8
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.6e-17 94.4 68 63.2
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.3e-16 90.5 103 45.6
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 7.5e-15 85.5 62 66.1
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 1.0e-11 75.1 51 64.7
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 3.3e-10 70.1 37 83.8


User provided reference genes

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