Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.4e-278 962.6 606 100.0
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 9.0e-249 863.6 614 90.4
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 5.2e-87 326.2 633 41.1
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.8e-79 301.2 638 44.8
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 7.0e-76 289.3 640 43.1
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 3.2e-73 280.4 625 38.7
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 4.0e-71 273.5 617 42.1
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.2e-70 271.9 615 40.7
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 3.4e-70 270.4 620 41.9
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.7e-69 268.1 651 45.2
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 2.3e-63 247.7 611 36.3
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 4.6e-59 233.4 385 45.7
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.7e-58 231.5 383 45.7
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 6.8e-55 219.5 471 37.8
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 1.2e-54 218.8 521 38.2
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.4e-52 211.1 368 42.4
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 9.2e-52 209.1 369 44.4
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 4.6e-51 206.8 395 41.5
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 8.6e-50 202.6 359 43.2
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.1e-49 202.2 626 34.2
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 3.3e-49 200.7 368 42.9
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 5.6e-49 199.9 370 41.1
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 7.3e-49 199.5 541 35.9
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 7.3e-49 199.5 382 41.9
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 9.5e-49 199.1 368 42.1
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 8.1e-48 196.1 379 41.2
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 1.8e-47 194.9 645 38.4
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 8.9e-47 192.6 547 34.2
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 7.5e-46 189.5 640 31.7
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.4e-44 183.3 620 32.4
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 5.4e-44 183.3 463 38.0
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 3.5e-43 180.6 370 39.7
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.3e-42 177.9 337 43.3
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 6.6e-42 176.4 338 43.2
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.1e-40 171.4 355 42.0
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 2.8e-40 171.0 293 44.0
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 7.6e-38 162.9 689 28.7
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 1.7e-37 161.8 471 33.5
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.7e-37 161.8 341 39.6
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.8e-37 160.6 431 36.2
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 4.9e-37 160.2 320 41.9
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 6.4e-37 159.8 698 30.1
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 1.1e-36 159.1 367 37.3
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.4e-36 158.7 399 35.1
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.2e-36 157.5 380 36.8
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 7.1e-36 156.4 398 34.7
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.2e-36 156.0 411 35.8
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.1e-35 154.8 407 36.6
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 6.0e-35 153.3 500 31.8
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.3e-34 151.4 363 37.2
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 3.9e-34 150.6 712 30.8
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 2.5e-33 147.9 298 43.3
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 5.6e-33 146.7 305 42.3
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 1.6e-32 145.2 461 34.1
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.8e-32 144.4 342 38.9
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 3.6e-32 144.1 461 32.5
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 4.7e-32 143.7 351 36.8
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 4.7e-32 143.7 291 42.6
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 1.1e-31 142.5 523 31.5
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 5.2e-31 140.2 271 35.8
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 5.2e-31 140.2 258 39.5
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.9e-31 139.4 699 29.3
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 2.6e-30 137.9 397 33.8
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 4.4e-30 137.1 398 34.9
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 4.4e-30 137.1 391 35.5
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 7.6e-30 136.3 414 35.3
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.7e-29 135.2 374 36.6
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.8e-29 134.0 696 28.7
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 6.4e-29 133.3 402 32.8
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 8.4e-29 132.9 366 36.9
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 8.4e-29 132.9 204 48.0
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 1.9e-28 131.7 411 33.3
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.9e-28 131.7 254 38.2
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 4.2e-28 130.6 329 35.6
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 5.4e-28 130.2 386 33.7
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 5.4e-28 130.2 365 37.0
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.6e-27 128.6 626 29.6
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 2.1e-27 128.3 579 28.8
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 2.1e-27 128.3 616 28.7
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.7e-27 127.9 594 29.3
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 3.5e-27 127.5 374 33.4
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 6.0e-27 126.7 361 33.8
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 6.0e-27 126.7 627 29.0
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 7.8e-27 126.3 303 35.0
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 1.0e-26 125.9 285 43.2
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 2.3e-26 124.8 409 34.0
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 6.6e-26 123.2 381 36.0
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 6.6e-26 123.2 381 36.0
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 6.6e-26 123.2 370 35.9
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-25 122.5 612 28.6
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-25 122.5 417 33.3
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.1e-25 122.5 209 44.5
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.1e-25 122.5 582 28.2
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.9e-25 121.7 407 33.4
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.3e-24 119.0 391 31.7
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.3e-24 119.0 383 33.7
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.1e-24 118.2 641 28.9
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.1e-24 118.2 590 28.0
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 2.8e-24 117.9 377 31.6
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-23 115.9 619 27.3
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.4e-23 115.5 643 28.6
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 3.1e-23 114.4 473 29.0
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.0e-23 114.0 394 31.7
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 4.0e-23 114.0 286 37.4
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 4.0e-23 114.0 346 35.8
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 5.3e-23 113.6 386 31.9
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.5e-22 112.1 291 34.4
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 3.4e-22 110.9 404 30.9
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-21 108.2 614 27.4
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 2.9e-21 107.8 357 31.7
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.9e-21 107.8 289 36.3
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 1.9e-20 105.1 295 35.6
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 7.1e-20 103.2 222 41.0
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 1.6e-19 102.1 618 26.5
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.7e-19 101.3 150 48.0
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 4.6e-19 100.5 201 42.8
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.3e-18 99.0 261 33.3
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.8e-18 98.6 267 33.3
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 1.8e-18 98.6 620 28.7
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 3.9e-18 97.4 324 31.5
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 8.7e-18 96.3 222 41.4
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 3.3e-17 94.4 400 29.8
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 5.6e-17 93.6 294 34.4
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 7.4e-17 93.2 191 40.8
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 7.4e-17 93.2 171 43.9
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 7.4e-17 93.2 168 44.0
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 1.3e-16 92.4 272 33.8
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 2.1e-16 91.7 191 40.3
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 2.1e-16 91.7 342 30.7
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 4.8e-16 90.5 392 28.6
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 6.2e-16 90.1 287 33.4
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 6.2e-16 90.1 309 32.0
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.4e-15 89.0 271 35.1
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.2e-14 85.9 293 31.1
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 1.5e-14 85.5 307 32.6
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.4e-14 84.3 324 31.5
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 4.5e-14 84.0 288 33.7
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 4.5e-14 84.0 291 34.0
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 4.5e-14 84.0 231 35.9
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 5.8e-14 83.6 182 38.5
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.9e-13 81.3 657 26.2
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 3.2e-12 77.8 318 30.8
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 9.3e-12 76.3 218 33.0
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 6.0e-11 73.6 139 36.7
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 6.0e-11 73.6 286 30.1
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.0e-10 72.8 459 26.1
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.9e-10 70.9 128 43.8
Haze_13708 Corylus avellana HOM05D004189 ORTHO05D004092 6.7e-10 70.1 332 29.8
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.5e-09 68.2 191 33.0
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 9.6e-09 66.2 191 32.5
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.1e-08 65.1 184 30.4
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.8e-08 63.9 256 29.3
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 1.4e-07 62.4 113 39.8
Os10g0505900 Oryza sativa ssp. japonica HOM05D036983 ORTHO05D037006 1.4e-07 62.4 148 35.1
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 4.0e-07 60.8 118 38.1
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 5.3e-07 60.5 124 40.3
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 1.2e-06 59.3 189 33.3
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 2.0e-06 58.5 134 35.8
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 2.0e-06 58.5 134 35.8
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.6e-06 58.2 141 34.8
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 2.6e-06 58.2 148 31.8
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 3.4e-06 57.8 134 35.8
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.5e-06 57.4 129 38.8
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 4.5e-06 57.4 113 36.3
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 7.6e-06 56.6 92 40.2


User provided reference genes

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