Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 6.2e-290 1000.3 610 100.0
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 7.7e-248 860.5 614 90.4
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.2e-94 351.7 629 49.0
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.7e-93 347.8 625 42.6
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 9.5e-89 332.0 639 46.5
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.2e-83 315.1 648 46.3
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 2.3e-82 310.8 615 44.6
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 5.0e-82 309.7 618 43.9
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 8.6e-82 308.9 611 42.9
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 5.6e-81 306.2 624 40.5
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 2.1e-72 277.7 606 38.4
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 3.3e-65 253.8 598 41.5
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 2.6e-62 244.2 617 37.3
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 1.3e-61 241.9 351 46.7
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 4.9e-61 240.0 620 36.9
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 3.9e-58 230.3 604 41.7
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 4.3e-57 226.9 596 35.2
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 9.6e-57 225.7 649 39.1
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.6e-56 224.9 632 33.9
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.8e-55 221.5 538 35.3
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 2.9e-53 214.2 360 45.0
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 8.4e-53 212.6 614 37.9
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.1e-52 212.2 346 45.7
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.1e-52 209.5 616 33.6
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.2e-51 208.8 346 44.8
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 2.1e-51 208.0 376 42.8
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.6e-51 206.8 344 43.9
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 4.6e-51 206.8 355 43.9
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 5.6e-49 199.9 365 43.8
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 7.3e-49 199.5 366 43.4
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.1e-47 194.1 337 45.1
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 9.0e-47 192.6 338 45.0
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 5.8e-46 189.9 653 32.6
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 9.9e-46 189.1 360 41.4
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 2.2e-45 188.0 719 32.1
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 2.9e-45 187.6 682 30.4
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.9e-44 184.9 697 30.7
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.0e-43 179.9 377 40.1
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.5e-41 175.3 349 42.4
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 1.9e-41 174.9 379 38.0
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.5e-41 174.5 375 38.9
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 1.4e-39 168.7 735 34.1
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 4.0e-39 167.2 542 31.7
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 5.3e-39 166.8 295 43.4
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-38 165.2 647 30.6
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 2.0e-38 164.9 330 39.7
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 2.6e-38 164.5 394 36.3
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.5e-38 163.7 372 38.7
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 9.9e-38 162.5 461 34.7
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.3e-37 162.2 393 35.9
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 9.3e-36 156.0 613 31.5
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 9.3e-36 156.0 343 39.9
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.1e-35 154.8 667 30.6
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 6.0e-35 153.3 464 33.8
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 7.9e-35 152.9 501 34.9
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 1.0e-34 152.5 609 30.0
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 3.0e-34 151.0 257 40.1
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 6.7e-34 149.8 493 31.2
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 6.7e-34 149.8 286 37.4
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.3e-32 145.6 398 36.7
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.6e-32 145.2 446 32.1
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.8e-32 144.4 350 38.3
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.4e-31 141.4 354 38.7
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 3.1e-31 141.0 398 36.2
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 5.3e-31 140.2 587 29.3
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 5.3e-31 140.2 584 29.3
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 6.9e-31 139.8 537 31.5
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 9.0e-31 139.4 616 28.6
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 9.0e-31 139.4 299 42.5
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 1.2e-30 139.0 410 36.1
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.5e-30 138.7 339 36.9
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 2.0e-30 138.3 409 34.0
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 2.6e-30 137.9 618 29.4
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 3.4e-30 137.5 597 30.0
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 3.4e-30 137.5 330 40.6
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 4.5e-30 137.1 299 41.5
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.0e-29 136.0 356 34.8
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.0e-29 136.0 288 36.8
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.3e-29 135.6 613 29.4
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.3e-29 135.6 352 37.8
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 2.2e-29 134.8 413 32.7
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 4.9e-29 133.7 612 29.7
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-28 132.5 385 33.2
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-28 132.5 393 35.9
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-28 132.5 393 35.9
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-28 132.1 394 35.3
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.4e-28 132.1 595 29.4
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.5e-28 131.3 575 28.5
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 4.2e-28 130.6 579 29.2
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 5.5e-28 130.2 355 34.1
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.5e-28 130.2 404 33.7
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 5.5e-28 130.2 404 33.7
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.2e-27 129.0 692 26.7
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.6e-27 128.6 609 29.2
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 2.7e-27 127.9 331 36.0
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 4.6e-27 127.1 367 32.7
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 6.0e-27 126.7 304 36.5
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 7.9e-27 126.3 282 41.1
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 7.9e-27 126.3 345 35.7
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.8e-26 125.2 371 35.6
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 3.0e-26 124.4 623 28.1
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.9e-26 124.0 604 27.2
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 5.1e-26 123.6 687 26.6
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.5e-25 122.1 633 28.4
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 5.7e-25 120.2 682 27.7
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 7.4e-25 119.8 487 28.7
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 3.7e-24 117.5 603 27.7
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.8e-24 117.1 413 31.5
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.4e-23 114.8 283 37.5
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 2.0e-22 111.7 619 27.3
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.0e-22 111.7 207 43.5
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.6e-22 111.3 253 39.1
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 3.8e-21 107.5 595 28.2
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 3.2e-20 104.4 213 43.2
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 4.2e-20 104.0 236 35.2
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 2.1e-19 101.7 600 26.3
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 2.1e-19 101.7 220 40.9
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 6.1e-19 100.1 342 29.5
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 1.0e-18 99.4 420 29.8
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.0e-18 99.4 265 34.7
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 2.3e-18 98.2 313 33.2
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 6.7e-18 96.7 288 33.3
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 1.5e-17 95.5 340 30.0
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 2.5e-17 94.7 220 41.4
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 5.7e-17 93.6 294 34.4
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 2.2e-16 91.7 271 33.2
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 3.7e-16 90.9 946 22.5
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 4.8e-16 90.5 295 33.9
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 4.8e-16 90.5 176 40.9
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 4.8e-16 90.5 176 40.9
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 6.3e-16 90.1 200 37.5
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 8.2e-16 89.7 302 33.4
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-15 89.0 298 32.9
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 1.4e-15 89.0 301 33.2
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.8e-15 88.6 631 26.6
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 1.8e-15 88.6 200 37.0
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 4.1e-15 87.4 287 31.7
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 9.0e-15 86.3 296 30.1
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 9.0e-15 86.3 181 39.8
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.2e-14 85.9 233 35.6
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.4e-12 79.0 550 26.9
Haze_13708 Corylus avellana HOM05D004189 ORTHO05D004092 1.4e-12 79.0 336 29.8
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 1.9e-12 78.6 356 27.5
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 3.2e-12 77.8 297 32.0
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.2e-12 77.4 180 36.7
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 4.2e-12 77.4 172 36.0
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 9.4e-12 76.3 218 34.4
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 1.6e-11 75.5 180 36.1
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 1.6e-11 75.5 363 29.8
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 7.9e-11 73.2 128 44.5
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.5e-09 68.9 184 32.6
Os10g0505900 Oryza sativa ssp. japonica HOM05D036983 ORTHO05D037006 1.7e-08 65.5 127 40.2
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 2.2e-08 65.1 188 34.0
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 4.8e-08 63.9 116 39.7
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 8.2e-08 63.2 248 28.2
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 1.4e-07 62.4 111 40.5
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 1.4e-07 62.4 144 38.9
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 1.8e-07 62.0 111 40.5
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 1.8e-07 62.0 111 40.5
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.8e-07 62.0 360 26.9
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 2.4e-07 61.6 127 34.6
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 3.1e-07 61.2 111 40.5
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.1e-07 60.8 81 48.1
Zm00001eb220700 Zea mays HOM05D036983 ORTHO05D037006 5.3e-07 60.5 107 42.1
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 6.9e-07 60.1 92 42.4
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 1.5e-06 58.9 102 40.2
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 1.5e-06 58.9 246 27.2
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.0e-06 58.5 130 36.9
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 2.0e-06 58.5 113 37.2
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.0e-06 58.5 226 31.9
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 2.6e-06 58.2 160 32.5


User provided reference genes

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