Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 1.7e-48 195.7 99 100.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.6e-44 181.8 99 93.9
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 1.0e-40 169.9 92 93.5
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.1e-39 166.4 99 85.9
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 4.7e-38 161.0 97 83.5
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 4.7e-38 161.0 99 83.8
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.8e-37 159.1 99 81.8
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 4.0e-37 157.9 89 87.6
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 8.8e-37 156.8 99 82.8
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 8.8e-37 156.8 99 79.8
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 1.5e-36 156.0 95 81.1
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.5e-36 156.0 86 90.7
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.0e-36 155.6 97 79.4
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.6e-36 155.2 97 81.4
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 3.4e-36 154.8 85 90.6
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 3.4e-36 154.8 97 81.4
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 5.7e-36 154.1 97 79.4
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 5.7e-36 154.1 97 80.4
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 5.7e-36 154.1 94 81.9
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.7e-35 152.5 85 88.2
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 2.8e-35 151.8 101 78.2
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 3.7e-35 151.4 90 83.3
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 1.1e-34 149.8 80 97.5
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 1.1e-34 149.8 86 87.2
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.4e-34 149.4 85 87.1
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 1.8e-34 149.1 89 83.1
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 2.4e-34 148.7 97 78.4
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.1e-34 147.9 100 77.0
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 5.4e-34 147.5 86 84.9
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 7.0e-34 147.1 86 83.7
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 9.2e-34 146.7 91 82.4
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 9.2e-34 146.7 96 76.0
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 1.6e-33 146.0 92 81.5
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.6e-33 146.0 93 78.5
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 2.0e-33 145.6 85 83.5
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 2.0e-33 145.6 89 83.1
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 2.0e-33 145.6 89 83.1
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.0e-33 145.6 80 92.5
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.0e-33 145.6 80 92.5
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.0e-33 145.6 80 92.5
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 2.7e-33 145.2 100 73.0
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 2.7e-33 145.2 88 84.1
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 4.5e-33 144.4 99 77.8
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 4.5e-33 144.4 95 75.8
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 5.9e-33 144.1 102 73.5
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 5.9e-33 144.1 99 77.8
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 5.9e-33 144.1 98 76.5
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.0e-32 143.3 94 74.5
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 1.0e-32 143.3 82 85.4
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 1.3e-32 142.9 89 79.8
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 1.7e-32 142.5 89 78.7
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 3.8e-32 141.4 98 73.5
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 6.6e-32 140.6 99 78.8
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 6.6e-32 140.6 102 75.5
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 8.6e-32 140.2 93 76.3
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 8.6e-32 140.2 89 78.7
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 1.1e-31 139.8 89 80.9
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.1e-31 139.8 103 70.9
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 1.5e-31 139.4 84 81.0
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 1.9e-31 139.0 96 72.9
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 1.9e-31 139.0 84 86.9
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 3.3e-31 138.3 83 81.9
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 4.3e-31 137.9 99 74.7
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 4.3e-31 137.9 85 81.2
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 4.3e-31 137.9 86 79.1
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 4.3e-31 137.9 91 78.0
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 4.3e-31 137.9 91 78.0
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 5.6e-31 137.5 91 78.0
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 7.3e-31 137.1 91 78.0
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 7.3e-31 137.1 102 69.6
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 1.6e-30 136.0 97 70.1
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 1.6e-30 136.0 86 76.7
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.6e-30 136.0 100 68.0
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.6e-30 136.0 95 74.7
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.1e-30 135.6 87 80.5
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 2.1e-30 135.6 97 71.1
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 2.8e-30 135.2 80 85.0
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.8e-30 135.2 80 87.5
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 2.8e-30 135.2 105 70.5
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 3.6e-30 134.8 90 74.4
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 6.1e-30 134.0 80 81.2
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 8.0e-30 133.7 87 79.3
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.8e-29 132.5 82 79.3
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 1.8e-29 132.5 95 69.5
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 3.0e-29 131.7 95 68.4
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 6.8e-29 130.6 93 71.0
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 6.8e-29 130.6 82 82.9
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 8.9e-29 130.2 80 83.8
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 8.9e-29 130.2 79 82.3
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.2e-28 129.8 95 67.4
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 1.2e-28 129.8 80 80.0
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 1.2e-28 129.8 78 83.3
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.0e-28 129.0 95 67.4
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 2.6e-28 128.6 95 67.4
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.6e-28 128.6 95 67.4
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 2.6e-28 128.6 85 75.3
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 3.4e-28 128.3 95 68.4
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 3.4e-28 128.3 95 68.4
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 3.4e-28 128.3 85 76.5
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 5.7e-28 127.5 84 72.6
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 7.5e-28 127.1 95 67.4
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 9.8e-28 126.7 91 71.4
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 1.3e-27 126.3 89 77.5
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 2.2e-27 125.6 95 65.3
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 2.2e-27 125.6 95 65.3
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 2.2e-27 125.6 95 65.3
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.9e-27 125.2 73 89.0
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 3.7e-27 124.8 81 77.8
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 4.9e-27 124.4 78 82.1
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 6.4e-27 124.0 91 67.0
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 6.4e-27 124.0 91 67.0
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 6.4e-27 124.0 91 67.0
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 6.4e-27 124.0 91 67.0
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 8.3e-27 123.6 76 82.9
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 1.1e-26 123.2 92 66.3
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 1.1e-26 123.2 92 66.3
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 1.1e-26 123.2 92 66.3
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.4e-26 122.9 81 76.5
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 1.4e-26 122.9 80 81.2
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.4e-26 122.9 87 72.4
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 3.2e-26 121.7 78 83.3
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 5.4e-26 120.9 84 76.2
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.2e-25 119.8 74 82.4
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 1.7e-24 115.9 83 66.3
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.9e-24 114.8 80 76.2
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 5.0e-24 114.4 79 78.5
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 6.6e-24 114.0 79 69.6
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 6.6e-24 114.0 79 69.6
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 6.6e-24 114.0 79 69.6
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 1.9e-23 112.5 76 75.0
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 6.8e-21 104.0 73 75.3
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 1.5e-20 102.8 78 66.7
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 4.9e-19 97.8 54 87.0
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 4.9e-19 97.8 88 56.8
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 1.1e-18 96.7 78 64.1
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.9e-18 95.9 87 58.6
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.9e-18 95.9 57 78.9
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 6.0e-17 90.9 75 64.0
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 1.3e-16 89.7 95 54.7
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.6e-16 87.4 57 75.4
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.3e-15 85.1 71 63.4
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.3e-15 85.1 71 63.4
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 4.0e-13 78.2 90 45.6
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 3.4e-12 75.1 51 70.6
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 4.6e-09 64.7 40 80.0


User provided reference genes

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